# Assembly name: ASM2355843v2 # Organism name: Drosophila sulfurigaster albostrigata (flies) # Infraspecific name: strain=15112-1811.04 # Sex: female # Taxid: 89887 # BioSample: SAMN12703456 # BioProject: PRJNA736413 # Submitter: University of California Berkeley # Date: 2022-05-31 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAJOLL01 # Assembly method: wtdbg2 v. 2 # Expected final version: yes # Genome coverage: 43x # Sequencing technology: Oxford Nanopore MinION # RefSeq category: Representative Genome # GenBank assembly accession: GCA_023558435.2 # RefSeq assembly accession: GCF_023558435.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_023558495.2 GCF_023558495.1 Primary Assembly ## GCA_023558515.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name 2L assembled-molecule 2L Chromosome CM042362.1 = NC_084881.1 Primary Assembly 30983057 na 2R assembled-molecule 2R Chromosome CM042363.1 = NC_084882.1 Primary Assembly 37627869 na 3 assembled-molecule 3 Chromosome CM042364.1 = NC_084883.1 Primary Assembly 56209854 na 4 assembled-molecule 4 Chromosome CM042365.1 = NC_084884.1 Primary Assembly 2495194 na X assembled-molecule X Chromosome CM042366.1 = NC_084885.1 Primary Assembly 33386403 na contig_114_pilon unplaced-scaffold na na JAJOLL010000001.1 = NW_026909660.1 Primary Assembly 108529 na contig_147_pilon unplaced-scaffold na na JAJOLL010000002.1 = NW_026909661.1 Primary Assembly 69988 na contig_182_pilon unplaced-scaffold na na JAJOLL010000003.1 = NW_026909662.1 Primary Assembly 265349 na contig_191_pilon unplaced-scaffold na na JAJOLL010000004.1 = NW_026909663.1 Primary Assembly 37408 na contig_219_pilon unplaced-scaffold na na JAJOLL010000005.1 = NW_026909664.1 Primary Assembly 134272 na contig_222_pilon unplaced-scaffold na na JAJOLL010000006.1 = NW_026909665.1 Primary Assembly 194598 na contig_233_pilon unplaced-scaffold na na JAJOLL010000007.1 = NW_026909666.1 Primary Assembly 101002 na contig_289_pilon unplaced-scaffold na na JAJOLL010000008.1 = NW_026909668.1 Primary Assembly 1076875 na contig_454_pilon unplaced-scaffold na na JAJOLL010000010.1 = NW_026909669.1 Primary Assembly 56472 na contig_49_pilon unplaced-scaffold na na JAJOLL010000011.1 = NW_026909670.1 Primary Assembly 65213 na contig_56_pilon unplaced-scaffold na na JAJOLL010000012.1 = NW_026909671.1 Primary Assembly 92593 na contig_63_pilon unplaced-scaffold na na JAJOLL010000013.1 = NW_026909672.1 Primary Assembly 220807 na contig_88_pilon unplaced-scaffold na na JAJOLL010000014.1 = NW_026909673.1 Primary Assembly 221183 na ctg101_pilon unplaced-scaffold na na JAJOLL010000016.1 = NW_026909674.1 Primary Assembly 25995 na ctg104_pilon unplaced-scaffold na na JAJOLL010000017.1 = NW_026909675.1 Primary Assembly 25793 na ctg105_pilon unplaced-scaffold na na JAJOLL010000018.1 = NW_026909676.1 Primary Assembly 23869 na ctg106_pilon unplaced-scaffold na na JAJOLL010000019.1 = NW_026909677.1 Primary Assembly 24026 na ctg107_pilon unplaced-scaffold na na JAJOLL010000020.1 = NW_026909678.1 Primary Assembly 55707 na ctg109_pilon unplaced-scaffold na na JAJOLL010000021.1 = NW_026909679.1 Primary Assembly 22671 na ctg111_pilon unplaced-scaffold na na JAJOLL010000022.1 = NW_026909680.1 Primary Assembly 19760 na ctg113_pilon unplaced-scaffold na na JAJOLL010000023.1 = NW_026909682.1 Primary Assembly 20287 na ctg114_pilon unplaced-scaffold na na JAJOLL010000024.1 = NW_026909683.1 Primary Assembly 19257 na ctg115_pilon unplaced-scaffold na na JAJOLL010000025.1 = NW_026909684.1 Primary Assembly 18990 na ctg116_pilon unplaced-scaffold na na JAJOLL010000026.1 = NW_026909685.1 Primary Assembly 49256 na ctg118_pilon unplaced-scaffold na na JAJOLL010000027.1 = NW_026909686.1 Primary Assembly 18309 na ctg119_pilon unplaced-scaffold na na JAJOLL010000028.1 = NW_026909687.1 Primary Assembly 16210 na ctg125_pilon unplaced-scaffold na na JAJOLL010000030.1 = NW_026909688.1 Primary Assembly 12042 na ctg126_pilon unplaced-scaffold na na JAJOLL010000031.1 = NW_026909689.1 Primary Assembly 12852 na ctg127_pilon unplaced-scaffold na na JAJOLL010000032.1 = NW_026909690.1 Primary Assembly 11592 na ctg128_pilon unplaced-scaffold na na JAJOLL010000033.1 = NW_026909691.1 Primary Assembly 12559 na ctg131_pilon unplaced-scaffold na na JAJOLL010000034.1 = NW_026909692.1 Primary Assembly 12138 na ctg133_pilon unplaced-scaffold na na JAJOLL010000035.1 = NW_026909693.1 Primary Assembly 23940 na ctg134_pilon unplaced-scaffold na na JAJOLL010000036.1 = NW_026909694.1 Primary Assembly 45656 na ctg136_pilon unplaced-scaffold na na JAJOLL010000037.1 = NW_026909695.1 Primary Assembly 11304 na ctg142_pilon unplaced-scaffold na na JAJOLL010000038.1 = NW_026909697.1 Primary Assembly 12387 na ctg143_pilon unplaced-scaffold na na JAJOLL010000039.1 = NW_026909698.1 Primary Assembly 10304 na ctg146_pilon unplaced-scaffold na na JAJOLL010000040.1 = NW_026909699.1 Primary Assembly 8391 na ctg149_pilon unplaced-scaffold na na JAJOLL010000042.1 = NW_026909700.1 Primary Assembly 10840 na ctg150_pilon unplaced-scaffold na na JAJOLL010000043.1 = NW_026909701.1 Primary Assembly 8946 na ctg151_pilon unplaced-scaffold na na JAJOLL010000044.1 = NW_026909702.1 Primary Assembly 12702 na ctg152_pilon unplaced-scaffold na na JAJOLL010000045.1 = NW_026909703.1 Primary Assembly 10621 na ctg157_pilon unplaced-scaffold na na JAJOLL010000046.1 = NW_026909704.1 Primary Assembly 7434 na ctg158_pilon unplaced-scaffold na na JAJOLL010000047.1 = NW_026909705.1 Primary Assembly 7604 na ctg163_pilon unplaced-scaffold na na JAJOLL010000049.1 = NW_026909706.1 Primary Assembly 6333 na ctg170_pilon unplaced-scaffold na na JAJOLL010000050.1 = NW_026909707.1 Primary Assembly 5160 na ctg172_pilon unplaced-scaffold na na JAJOLL010000051.1 = NW_026909708.1 Primary Assembly 37947 na ctg174_pilon unplaced-scaffold na na JAJOLL010000052.1 = NW_026909709.1 Primary Assembly 9378 na ctg33_pilon unplaced-scaffold na na JAJOLL010000053.1 = NW_026909711.1 Primary Assembly 150748 na ctg38_pilon unplaced-scaffold na na JAJOLL010000054.1 = NW_026909712.1 Primary Assembly 108380 na ctg42_pilon unplaced-scaffold na na JAJOLL010000055.1 = NW_026909713.1 Primary Assembly 124144 na ctg47_pilon unplaced-scaffold na na JAJOLL010000056.1 = NW_026909714.1 Primary Assembly 77578 na ctg48_pilon unplaced-scaffold na na JAJOLL010000057.1 = NW_026909715.1 Primary Assembly 123846 na ctg51_pilon unplaced-scaffold na na JAJOLL010000058.1 = NW_026909716.1 Primary Assembly 80963 na ctg52_pilon unplaced-scaffold na na JAJOLL010000059.1 = NW_026909717.1 Primary Assembly 65642 na ctg53_pilon unplaced-scaffold na na JAJOLL010000060.1 = NW_026909718.1 Primary Assembly 64587 na ctg57_pilon unplaced-scaffold na na JAJOLL010000061.1 = NW_026909721.1 Primary Assembly 96554 na ctg58_pilon unplaced-scaffold na na JAJOLL010000062.1 = NW_026909722.1 Primary Assembly 60267 na ctg60_pilon unplaced-scaffold na na JAJOLL010000063.1 = NW_026909723.1 Primary Assembly 61295 na ctg63_pilon unplaced-scaffold na na JAJOLL010000064.1 = NW_026909724.1 Primary Assembly 94275 na ctg66_pilon unplaced-scaffold na na JAJOLL010000065.1 = NW_026909725.1 Primary Assembly 145037 na ctg68_pilon unplaced-scaffold na na JAJOLL010000066.1 = NW_026909726.1 Primary Assembly 47692 na ctg69_pilon unplaced-scaffold na na JAJOLL010000067.1 = NW_026909727.1 Primary Assembly 158991 na ctg71_pilon unplaced-scaffold na na JAJOLL010000068.1 = NW_026909728.1 Primary Assembly 46197 na ctg78_pilon unplaced-scaffold na na JAJOLL010000069.1 = NW_026909730.1 Primary Assembly 43630 na ctg79_pilon unplaced-scaffold na na JAJOLL010000070.1 = NW_026909731.1 Primary Assembly 46139 na ctg80_pilon unplaced-scaffold na na JAJOLL010000071.1 = NW_026909732.1 Primary Assembly 40334 na ctg81_pilon unplaced-scaffold na na JAJOLL010000072.1 = NW_026909733.1 Primary Assembly 63074 na ctg82_pilon unplaced-scaffold na na JAJOLL010000073.1 = NW_026909734.1 Primary Assembly 38634 na ctg83_pilon unplaced-scaffold na na JAJOLL010000074.1 = NW_026909735.1 Primary Assembly 42083 na ctg84_pilon unplaced-scaffold na na JAJOLL010000075.1 = NW_026909736.1 Primary Assembly 71848 na ctg86_pilon unplaced-scaffold na na JAJOLL010000076.1 = NW_026909737.1 Primary Assembly 35943 na ctg88_pilon unplaced-scaffold na na JAJOLL010000077.1 = NW_026909738.1 Primary Assembly 57855 na ctg90_pilon unplaced-scaffold na na JAJOLL010000078.1 = NW_026909739.1 Primary Assembly 21109 na ctg91_pilon unplaced-scaffold na na JAJOLL010000079.1 = NW_026909740.1 Primary Assembly 31785 na ctg93_pilon unplaced-scaffold na na JAJOLL010000080.1 = NW_026909741.1 Primary Assembly 30863 na ctg94_pilon unplaced-scaffold na na JAJOLL010000081.1 = NW_026909742.1 Primary Assembly 20326 na ctg95_pilon unplaced-scaffold na na JAJOLL010000082.1 = NW_026909743.1 Primary Assembly 67085 na ctg99_pilon unplaced-scaffold na na JAJOLL010000083.1 = NW_026909744.1 Primary Assembly 28838 na scaffold_47_pilon unplaced-scaffold na na JAJOLL010000084.1 = NW_026909745.1 Primary Assembly 308019 na contig_104_pilon unplaced-scaffold na na JAJOLL010000085.1 = NW_026909659.1 Primary Assembly 454485 na contig_277_pilon unplaced-scaffold na na JAJOLL010000086.1 = NW_026909667.1 Primary Assembly 100649 na ctg112_pilon unplaced-scaffold na na JAJOLL010000087.1 = NW_026909681.1 Primary Assembly 60288 na ctg140_pilon unplaced-scaffold na na JAJOLL010000089.1 = NW_026909696.1 Primary Assembly 42240 na ctg21_pilon unplaced-scaffold na na JAJOLL010000091.1 = NW_026909710.1 Primary Assembly 695959 na ctg54_pilon unplaced-scaffold na na JAJOLL010000092.1 = NW_026909719.1 Primary Assembly 307624 na ctg56_pilon unplaced-scaffold na na JAJOLL010000093.1 = NW_026909720.1 Primary Assembly 103983 na ctg73_pilon unplaced-scaffold na na JAJOLL010000095.1 = NW_026909729.1 Primary Assembly 55231 na mitochondria unlocalized-scaffold MT Mitochondrion JAJOLL010000029.1 <> na non-nuclear 15938 na