# Assembly name: mEleMax1 primary haplotype # Organism name: Elephas maximus indicus (Asiatic elephant) # Isolate: mEleMax1 # Sex: male # Taxid: 99487 # BioSample: SAMN29174328 # BioProject: PRJNA850184 # Submitter: Vertebrate Genomes Project # Date: 2022-07-06 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAMZQU01 # Assembly method: Hifiasm v. 0.16.1; purge_dups v. 07.12.21; Bionano solve v. 3.3; Salsa v. 2.3 # Expected final version: no # Genome coverage: 43.0x # Sequencing technology: PacBio Sequel II HiFi; Bionano optical mapping; Arima HiC # RefSeq category: Representative Genome # GenBank assembly accession: GCA_024166365.1 # RefSeq assembly accession: GCF_024166365.1 # RefSeq assembly and GenBank assemblies identical: yes # Linked assembly: GCA_024166345.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_024166375.1 GCF_024166375.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM044020.1 = NC_064819.1 Primary Assembly 243826021 na SUPER_2 assembled-molecule 2 Chromosome CM044021.1 = NC_064820.1 Primary Assembly 236636829 na SUPER_3 assembled-molecule 3 Chromosome CM044022.1 = NC_064821.1 Primary Assembly 221642160 na SUPER_4 assembled-molecule 4 Chromosome CM044023.1 = NC_064822.1 Primary Assembly 197257046 na SUPER_5 assembled-molecule 5 Chromosome CM044024.1 = NC_064823.1 Primary Assembly 166437468 na SUPER_6 assembled-molecule 6 Chromosome CM044025.1 = NC_064824.1 Primary Assembly 144996526 na SUPER_7 assembled-molecule 7 Chromosome CM044026.1 = NC_064825.1 Primary Assembly 138054969 na SUPER_8 assembled-molecule 8 Chromosome CM044027.1 = NC_064826.1 Primary Assembly 134521654 na SUPER_9 assembled-molecule 9 Chromosome CM044028.1 = NC_064827.1 Primary Assembly 127432672 na SUPER_10 assembled-molecule 10 Chromosome CM044029.1 = NC_064828.1 Primary Assembly 120120716 na SUPER_11 assembled-molecule 11 Chromosome CM044030.1 = NC_064829.1 Primary Assembly 117052157 na SUPER_12 assembled-molecule 12 Chromosome CM044031.1 = NC_064830.1 Primary Assembly 110876029 na SUPER_13 assembled-molecule 13 Chromosome CM044032.1 = NC_064831.1 Primary Assembly 106010586 na SUPER_14 assembled-molecule 14 Chromosome CM044033.1 = NC_064832.1 Primary Assembly 100093644 na SUPER_15 assembled-molecule 15 Chromosome CM044034.1 = NC_064833.1 Primary Assembly 96493520 na SUPER_16 assembled-molecule 16 Chromosome CM044035.1 = NC_064834.1 Primary Assembly 95037378 na SUPER_17 assembled-molecule 17 Chromosome CM044036.1 = NC_064835.1 Primary Assembly 91502332 na SUPER_18 assembled-molecule 18 Chromosome CM044037.1 = NC_064836.1 Primary Assembly 84764919 na SUPER_19 assembled-molecule 19 Chromosome CM044038.1 = NC_064837.1 Primary Assembly 85783627 na SUPER_20 assembled-molecule 20 Chromosome CM044039.1 = NC_064838.1 Primary Assembly 84109276 na SUPER_21 assembled-molecule 21 Chromosome CM044040.1 = NC_064839.1 Primary Assembly 83887677 na SUPER_22 assembled-molecule 22 Chromosome CM044041.1 = NC_064840.1 Primary Assembly 81976604 na SUPER_23 assembled-molecule 23 Chromosome CM044042.1 = NC_064841.1 Primary Assembly 79875053 na SUPER_24 assembled-molecule 24 Chromosome CM044043.1 = NC_064842.1 Primary Assembly 67738374 na SUPER_25 assembled-molecule 25 Chromosome CM044044.1 = NC_064843.1 Primary Assembly 68857337 na SUPER_26 assembled-molecule 26 Chromosome CM044045.1 = NC_064844.1 Primary Assembly 48605916 na SUPER_27 assembled-molecule 27 Chromosome CM044046.1 = NC_064845.1 Primary Assembly 38378272 na SUPER_X assembled-molecule X Chromosome CM044047.1 = NC_064846.1 Primary Assembly 181417050 na SUPER_Y assembled-molecule Y Chromosome CM044048.1 = NC_064847.1 Primary Assembly 15906474 na SUPER_3_unloc_1 unlocalized-scaffold 3 Chromosome JAMZQU010000004.1 = NW_026060228.1 Primary Assembly 2575300 na SUPER_3_unloc_2 unlocalized-scaffold 3 Chromosome JAMZQU010000005.1 = NW_026060229.1 Primary Assembly 1702368 na SUPER_7_unloc_1 unlocalized-scaffold 7 Chromosome JAMZQU010000011.1 = NW_026060230.1 Primary Assembly 2733587 na SUPER_7_unloc_2 unlocalized-scaffold 7 Chromosome JAMZQU010000012.1 = NW_026060231.1 Primary Assembly 981676 na SUPER_14_unloc_1 unlocalized-scaffold 14 Chromosome JAMZQU010000020.1 = NW_026060232.1 Primary Assembly 561868 na SUPER_18_unloc_1 unlocalized-scaffold 18 Chromosome JAMZQU010000025.1 = NW_026060233.1 Primary Assembly 2688458 na SUPER_18_unloc_2 unlocalized-scaffold 18 Chromosome JAMZQU010000026.1 = NW_026060234.1 Primary Assembly 1891111 na SUPER_19_unloc_1 unlocalized-scaffold 19 Chromosome JAMZQU010000028.1 = NW_026060235.1 Primary Assembly 2524588 na SUPER_24_unloc_1 unlocalized-scaffold 24 Chromosome JAMZQU010000034.1 = NW_026060236.1 Primary Assembly 2414265 na SUPER_Y_unloc_1 unlocalized-scaffold Y Chromosome JAMZQU010000039.1 = NW_026060237.1 Primary Assembly 4629437 na SUPER_Y_unloc_2 unlocalized-scaffold Y Chromosome JAMZQU010000040.1 = NW_026060238.1 Primary Assembly 1277313 na SUPER_Y_unloc_3 unlocalized-scaffold Y Chromosome JAMZQU010000041.1 = NW_026060239.1 Primary Assembly 1007399 na SUPER_Y_unloc_4 unlocalized-scaffold Y Chromosome JAMZQU010000042.1 = NW_026060240.1 Primary Assembly 764348 na SUPER_Y_unloc_5 unlocalized-scaffold Y Chromosome JAMZQU010000043.1 = NW_026060241.1 Primary Assembly 400907 na SUPER_Y_unloc_6 unlocalized-scaffold Y Chromosome JAMZQU010000044.1 = NW_026060242.1 Primary Assembly 270290 na scaffold_112 unplaced-scaffold na na JAMZQU010000052.1 = NW_026060243.1 Primary Assembly 161557 na scaffold_114 unplaced-scaffold na na JAMZQU010000049.1 = NW_026060244.1 Primary Assembly 153354 na scaffold_116 unplaced-scaffold na na JAMZQU010000059.1 = NW_026060245.1 Primary Assembly 138197 na scaffold_117 unplaced-scaffold na na JAMZQU010000061.1 = NW_026060246.1 Primary Assembly 123511 na scaffold_118 unplaced-scaffold na na JAMZQU010000064.1 = NW_026060247.1 Primary Assembly 83699 na scaffold_119 unplaced-scaffold na na JAMZQU010000058.1 = NW_026060248.1 Primary Assembly 80703 na scaffold_120 unplaced-scaffold na na JAMZQU010000045.1 = NW_026060249.1 Primary Assembly 67116 na scaffold_121 unplaced-scaffold na na JAMZQU010000057.1 = NW_026060250.1 Primary Assembly 66421 na scaffold_122 unplaced-scaffold na na JAMZQU010000051.1 = NW_026060251.1 Primary Assembly 62503 na scaffold_123 unplaced-scaffold na na JAMZQU010000056.1 = NW_026060252.1 Primary Assembly 54726 na scaffold_124 unplaced-scaffold na na JAMZQU010000053.1 = NW_026060253.1 Primary Assembly 45227 na scaffold_125 unplaced-scaffold na na JAMZQU010000063.1 = NW_026060254.1 Primary Assembly 44090 na scaffold_126 unplaced-scaffold na na JAMZQU010000054.1 = NW_026060255.1 Primary Assembly 18130 na scaffold_127 unplaced-scaffold na na JAMZQU010000048.1 = NW_026060256.1 Primary Assembly 5505 na scaffold_128 unplaced-scaffold na na JAMZQU010000062.1 = NW_026060257.1 Primary Assembly 5310 na scaffold_129 unplaced-scaffold na na JAMZQU010000047.1 = NW_026060258.1 Primary Assembly 3174 na scaffold_130 unplaced-scaffold na na JAMZQU010000046.1 = NW_026060259.1 Primary Assembly 1881 na scaffold_61 unplaced-scaffold na na JAMZQU010000055.1 = NW_026060260.1 Primary Assembly 2301476 na scaffold_76 unplaced-scaffold na na JAMZQU010000060.1 = NW_026060261.1 Primary Assembly 1325547 na scaffold_88 unplaced-scaffold na na JAMZQU010000050.1 = NW_026060262.1 Primary Assembly 789820 na