# Assembly name: ASM2624203v1 # Organism name: Mycobacterium pinniadriaticum (high G+C Gram-positive bacteria) # Infraspecific name: strain=CVI_P3 # Taxid: 2994102 # BioSample: SAMN31656079 # BioProject: PRJNA899446 # Submitter: Wellcome Centre for Human Genetics - Oxford Genomics Centre # Date: 2022-11-20 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JAPJDN01 # Assembly method: SPAdes v. 3.13.1 # Expected final version: yes # Genome coverage: 190x # Sequencing technology: Illumina NextSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_026242035.1 # RefSeq assembly accession: GCF_026242035.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_026242065.1 GCF_026242065.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name contig00001 unplaced-scaffold na na JAPJDN010000001.1 = NZ_JAPJDN010000001.1 Primary Assembly 415489 na contig00002 unplaced-scaffold na na JAPJDN010000002.1 = NZ_JAPJDN010000002.1 Primary Assembly 409470 na contig00003 unplaced-scaffold na na JAPJDN010000003.1 = NZ_JAPJDN010000003.1 Primary Assembly 348169 na contig00004 unplaced-scaffold na na JAPJDN010000004.1 = NZ_JAPJDN010000004.1 Primary Assembly 324380 na contig00005 unplaced-scaffold na na JAPJDN010000005.1 = NZ_JAPJDN010000005.1 Primary Assembly 296783 na contig00006 unplaced-scaffold na na JAPJDN010000006.1 = NZ_JAPJDN010000006.1 Primary Assembly 262685 na contig00007 unplaced-scaffold na na JAPJDN010000007.1 = NZ_JAPJDN010000007.1 Primary Assembly 247146 na contig00008 unplaced-scaffold na na JAPJDN010000008.1 = NZ_JAPJDN010000008.1 Primary Assembly 228122 na contig00009 unplaced-scaffold na na JAPJDN010000009.1 = NZ_JAPJDN010000009.1 Primary Assembly 226653 na contig00010 unplaced-scaffold na na JAPJDN010000010.1 = NZ_JAPJDN010000010.1 Primary Assembly 225461 na contig00011 unplaced-scaffold na na JAPJDN010000011.1 = NZ_JAPJDN010000011.1 Primary Assembly 177716 na contig00012 unplaced-scaffold na na JAPJDN010000012.1 = NZ_JAPJDN010000012.1 Primary Assembly 167559 na contig00013 unplaced-scaffold na na JAPJDN010000013.1 = NZ_JAPJDN010000013.1 Primary Assembly 147621 na contig00014 unplaced-scaffold na na JAPJDN010000014.1 = NZ_JAPJDN010000014.1 Primary Assembly 140993 na contig00015 unplaced-scaffold na na JAPJDN010000015.1 = NZ_JAPJDN010000015.1 Primary Assembly 125396 na contig00016 unplaced-scaffold na na JAPJDN010000016.1 = NZ_JAPJDN010000016.1 Primary Assembly 124673 na contig00017 unplaced-scaffold na na JAPJDN010000017.1 = NZ_JAPJDN010000017.1 Primary Assembly 122861 na contig00018 unplaced-scaffold na na JAPJDN010000018.1 = NZ_JAPJDN010000018.1 Primary Assembly 114592 na contig00019 unplaced-scaffold na na JAPJDN010000019.1 = NZ_JAPJDN010000019.1 Primary Assembly 112194 na contig00020 unplaced-scaffold na na JAPJDN010000020.1 = NZ_JAPJDN010000020.1 Primary Assembly 112113 na contig00021 unplaced-scaffold na na JAPJDN010000021.1 = NZ_JAPJDN010000021.1 Primary Assembly 112087 na contig00022 unplaced-scaffold na na JAPJDN010000022.1 = NZ_JAPJDN010000022.1 Primary Assembly 98822 na contig00023 unplaced-scaffold na na JAPJDN010000023.1 = NZ_JAPJDN010000023.1 Primary Assembly 97370 na contig00024 unplaced-scaffold na na JAPJDN010000024.1 = NZ_JAPJDN010000024.1 Primary Assembly 94285 na contig00025 unplaced-scaffold na na JAPJDN010000025.1 = NZ_JAPJDN010000025.1 Primary Assembly 87961 na contig00026 unplaced-scaffold na na JAPJDN010000026.1 = NZ_JAPJDN010000026.1 Primary Assembly 87696 na contig00027 unplaced-scaffold na na JAPJDN010000027.1 = NZ_JAPJDN010000027.1 Primary Assembly 85681 na contig00028 unplaced-scaffold na na JAPJDN010000028.1 = NZ_JAPJDN010000028.1 Primary Assembly 81653 na contig00029 unplaced-scaffold na na JAPJDN010000029.1 = NZ_JAPJDN010000029.1 Primary Assembly 81187 na contig00030 unplaced-scaffold na na JAPJDN010000030.1 = NZ_JAPJDN010000030.1 Primary Assembly 70157 na contig00031 unplaced-scaffold na na JAPJDN010000031.1 = NZ_JAPJDN010000031.1 Primary Assembly 69717 na contig00032 unplaced-scaffold na na JAPJDN010000032.1 = NZ_JAPJDN010000032.1 Primary Assembly 69624 na contig00033 unplaced-scaffold na na JAPJDN010000033.1 = NZ_JAPJDN010000033.1 Primary Assembly 64824 na contig00034 unplaced-scaffold na na JAPJDN010000034.1 = NZ_JAPJDN010000034.1 Primary Assembly 57130 na contig00035 unplaced-scaffold na na JAPJDN010000035.1 = NZ_JAPJDN010000035.1 Primary Assembly 57086 na contig00036 unplaced-scaffold na na JAPJDN010000036.1 = NZ_JAPJDN010000036.1 Primary Assembly 55458 na contig00037 unplaced-scaffold na na JAPJDN010000037.1 = NZ_JAPJDN010000037.1 Primary Assembly 53847 na contig00038 unplaced-scaffold na na JAPJDN010000038.1 = NZ_JAPJDN010000038.1 Primary Assembly 52408 na contig00039 unplaced-scaffold na na JAPJDN010000039.1 = NZ_JAPJDN010000039.1 Primary Assembly 51369 na contig00040 unplaced-scaffold na na JAPJDN010000040.1 = NZ_JAPJDN010000040.1 Primary Assembly 50881 na contig00041 unplaced-scaffold na na JAPJDN010000041.1 = NZ_JAPJDN010000041.1 Primary Assembly 49429 na contig00042 unplaced-scaffold na na JAPJDN010000042.1 = NZ_JAPJDN010000042.1 Primary Assembly 48023 na contig00043 unplaced-scaffold na na JAPJDN010000043.1 = NZ_JAPJDN010000043.1 Primary Assembly 45742 na contig00044 unplaced-scaffold na na JAPJDN010000044.1 = NZ_JAPJDN010000044.1 Primary Assembly 44397 na contig00045 unplaced-scaffold na na JAPJDN010000045.1 = NZ_JAPJDN010000045.1 Primary Assembly 44167 na contig00046 unplaced-scaffold na na JAPJDN010000046.1 = NZ_JAPJDN010000046.1 Primary Assembly 41960 na contig00047 unplaced-scaffold na na JAPJDN010000047.1 = NZ_JAPJDN010000047.1 Primary Assembly 40782 na contig00048 unplaced-scaffold na na JAPJDN010000048.1 = NZ_JAPJDN010000048.1 Primary Assembly 40601 na contig00049 unplaced-scaffold na na JAPJDN010000049.1 = NZ_JAPJDN010000049.1 Primary Assembly 38323 na contig00050 unplaced-scaffold na na JAPJDN010000050.1 = NZ_JAPJDN010000050.1 Primary Assembly 38313 na contig00051 unplaced-scaffold na na JAPJDN010000051.1 = NZ_JAPJDN010000051.1 Primary Assembly 34439 na contig00052 unplaced-scaffold na na JAPJDN010000052.1 = NZ_JAPJDN010000052.1 Primary Assembly 30723 na contig00053 unplaced-scaffold na na JAPJDN010000053.1 = NZ_JAPJDN010000053.1 Primary Assembly 30358 na contig00054 unplaced-scaffold na na JAPJDN010000054.1 = NZ_JAPJDN010000054.1 Primary Assembly 30086 na contig00055 unplaced-scaffold na na JAPJDN010000055.1 = NZ_JAPJDN010000055.1 Primary Assembly 26985 na contig00056 unplaced-scaffold na na JAPJDN010000056.1 = NZ_JAPJDN010000056.1 Primary Assembly 26561 na contig00057 unplaced-scaffold na na JAPJDN010000057.1 = NZ_JAPJDN010000057.1 Primary Assembly 26551 na contig00058 unplaced-scaffold na na JAPJDN010000058.1 = NZ_JAPJDN010000058.1 Primary Assembly 24973 na contig00059 unplaced-scaffold na na JAPJDN010000059.1 = NZ_JAPJDN010000059.1 Primary Assembly 24327 na contig00060 unplaced-scaffold na na JAPJDN010000060.1 = NZ_JAPJDN010000060.1 Primary Assembly 21780 na contig00061 unplaced-scaffold na na JAPJDN010000061.1 = NZ_JAPJDN010000061.1 Primary Assembly 21294 na contig00062 unplaced-scaffold na na JAPJDN010000062.1 = NZ_JAPJDN010000062.1 Primary Assembly 20848 na contig00063 unplaced-scaffold na na JAPJDN010000063.1 = NZ_JAPJDN010000063.1 Primary Assembly 20489 na contig00064 unplaced-scaffold na na JAPJDN010000064.1 = NZ_JAPJDN010000064.1 Primary Assembly 20307 na contig00065 unplaced-scaffold na na JAPJDN010000065.1 = NZ_JAPJDN010000065.1 Primary Assembly 20068 na contig00066 unplaced-scaffold na na JAPJDN010000066.1 = NZ_JAPJDN010000066.1 Primary Assembly 19727 na contig00067 unplaced-scaffold na na JAPJDN010000067.1 = NZ_JAPJDN010000067.1 Primary Assembly 18595 na contig00068 unplaced-scaffold na na JAPJDN010000068.1 = NZ_JAPJDN010000068.1 Primary Assembly 18354 na contig00069 unplaced-scaffold na na JAPJDN010000069.1 = NZ_JAPJDN010000069.1 Primary Assembly 18118 na contig00070 unplaced-scaffold na na JAPJDN010000070.1 = NZ_JAPJDN010000070.1 Primary Assembly 14173 na contig00071 unplaced-scaffold na na JAPJDN010000071.1 = NZ_JAPJDN010000071.1 Primary Assembly 10327 na contig00072 unplaced-scaffold na na JAPJDN010000072.1 = NZ_JAPJDN010000072.1 Primary Assembly 10073 na contig00073 unplaced-scaffold na na JAPJDN010000073.1 = NZ_JAPJDN010000073.1 Primary Assembly 9728 na contig00074 unplaced-scaffold na na JAPJDN010000074.1 = NZ_JAPJDN010000074.1 Primary Assembly 9368 na contig00075 unplaced-scaffold na na JAPJDN010000075.1 = NZ_JAPJDN010000075.1 Primary Assembly 9193 na contig00076 unplaced-scaffold na na JAPJDN010000076.1 = NZ_JAPJDN010000076.1 Primary Assembly 8456 na contig00077 unplaced-scaffold na na JAPJDN010000077.1 = NZ_JAPJDN010000077.1 Primary Assembly 7947 na contig00078 unplaced-scaffold na na JAPJDN010000078.1 = NZ_JAPJDN010000078.1 Primary Assembly 7593 na contig00079 unplaced-scaffold na na JAPJDN010000079.1 = NZ_JAPJDN010000079.1 Primary Assembly 6493 na contig00080 unplaced-scaffold na na JAPJDN010000080.1 = NZ_JAPJDN010000080.1 Primary Assembly 6269 na contig00081 unplaced-scaffold na na JAPJDN010000081.1 = NZ_JAPJDN010000081.1 Primary Assembly 6037 na contig00082 unplaced-scaffold na na JAPJDN010000082.1 = NZ_JAPJDN010000082.1 Primary Assembly 5833 na contig00083 unplaced-scaffold na na JAPJDN010000083.1 = NZ_JAPJDN010000083.1 Primary Assembly 5447 na contig00084 unplaced-scaffold na na JAPJDN010000084.1 = NZ_JAPJDN010000084.1 Primary Assembly 4654 na contig00085 unplaced-scaffold na na JAPJDN010000085.1 = NZ_JAPJDN010000085.1 Primary Assembly 4090 na contig00086 unplaced-scaffold na na JAPJDN010000086.1 = NZ_JAPJDN010000086.1 Primary Assembly 3468 na contig00087 unplaced-scaffold na na JAPJDN010000087.1 = NZ_JAPJDN010000087.1 Primary Assembly 3407 na contig00088 unplaced-scaffold na na JAPJDN010000088.1 = NZ_JAPJDN010000088.1 Primary Assembly 3075 na contig00089 unplaced-scaffold na na JAPJDN010000089.1 = NZ_JAPJDN010000089.1 Primary Assembly 2867 na contig00090 unplaced-scaffold na na JAPJDN010000090.1 = NZ_JAPJDN010000090.1 Primary Assembly 2262 na contig00091 unplaced-scaffold na na JAPJDN010000091.1 = NZ_JAPJDN010000091.1 Primary Assembly 2205 na contig00092 unplaced-scaffold na na JAPJDN010000092.1 = NZ_JAPJDN010000092.1 Primary Assembly 1901 na contig00093 unplaced-scaffold na na JAPJDN010000093.1 = NZ_JAPJDN010000093.1 Primary Assembly 1840 na contig00094 unplaced-scaffold na na JAPJDN010000094.1 = NZ_JAPJDN010000094.1 Primary Assembly 1780 na contig00095 unplaced-scaffold na na JAPJDN010000095.1 = NZ_JAPJDN010000095.1 Primary Assembly 1717 na contig00096 unplaced-scaffold na na JAPJDN010000096.1 = NZ_JAPJDN010000096.1 Primary Assembly 1664 na contig00097 unplaced-scaffold na na JAPJDN010000097.1 = NZ_JAPJDN010000097.1 Primary Assembly 1650 na contig00098 unplaced-scaffold na na JAPJDN010000098.1 = NZ_JAPJDN010000098.1 Primary Assembly 1643 na contig00099 unplaced-scaffold na na JAPJDN010000099.1 = NZ_JAPJDN010000099.1 Primary Assembly 1522 na contig00100 unplaced-scaffold na na JAPJDN010000100.1 = NZ_JAPJDN010000100.1 Primary Assembly 1501 na contig00101 unplaced-scaffold na na JAPJDN010000101.1 = NZ_JAPJDN010000101.1 Primary Assembly 1429 na contig00102 unplaced-scaffold na na JAPJDN010000102.1 = NZ_JAPJDN010000102.1 Primary Assembly 1423 na contig00103 unplaced-scaffold na na JAPJDN010000103.1 = NZ_JAPJDN010000103.1 Primary Assembly 1298 na contig00104 unplaced-scaffold na na JAPJDN010000104.1 = NZ_JAPJDN010000104.1 Primary Assembly 1231 na contig00105 unplaced-scaffold na na JAPJDN010000105.1 = NZ_JAPJDN010000105.1 Primary Assembly 1220 na contig00106 unplaced-scaffold na na JAPJDN010000106.1 = NZ_JAPJDN010000106.1 Primary Assembly 1210 na contig00107 unplaced-scaffold na na JAPJDN010000107.1 = NZ_JAPJDN010000107.1 Primary Assembly 1205 na contig00108 unplaced-scaffold na na JAPJDN010000108.1 = NZ_JAPJDN010000108.1 Primary Assembly 1161 na contig00109 unplaced-scaffold na na JAPJDN010000109.1 = NZ_JAPJDN010000109.1 Primary Assembly 1094 na contig00110 unplaced-scaffold na na JAPJDN010000110.1 = NZ_JAPJDN010000110.1 Primary Assembly 1025 na contig00111 unplaced-scaffold na na JAPJDN010000111.1 = NZ_JAPJDN010000111.1 Primary Assembly 951 na contig00112 unplaced-scaffold na na JAPJDN010000112.1 = NZ_JAPJDN010000112.1 Primary Assembly 949 na contig00113 unplaced-scaffold na na JAPJDN010000113.1 = NZ_JAPJDN010000113.1 Primary Assembly 887 na contig00114 unplaced-scaffold na na JAPJDN010000114.1 = NZ_JAPJDN010000114.1 Primary Assembly 719 na contig00115 unplaced-scaffold na na JAPJDN010000115.1 = NZ_JAPJDN010000115.1 Primary Assembly 679 na contig00116 unplaced-scaffold na na JAPJDN010000116.1 = NZ_JAPJDN010000116.1 Primary Assembly 636 na contig00117 unplaced-scaffold na na JAPJDN010000117.1 = NZ_JAPJDN010000117.1 Primary Assembly 597 na contig00118 unplaced-scaffold na na JAPJDN010000118.1 = NZ_JAPJDN010000118.1 Primary Assembly 596 na contig00119 unplaced-scaffold na na JAPJDN010000119.1 = NZ_JAPJDN010000119.1 Primary Assembly 596 na contig00120 unplaced-scaffold na na JAPJDN010000120.1 = NZ_JAPJDN010000120.1 Primary Assembly 578 na contig00121 unplaced-scaffold na na JAPJDN010000121.1 = NZ_JAPJDN010000121.1 Primary Assembly 535 na contig00122 unplaced-scaffold na na JAPJDN010000122.1 = NZ_JAPJDN010000122.1 Primary Assembly 535 na contig00123 unplaced-scaffold na na JAPJDN010000123.1 = NZ_JAPJDN010000123.1 Primary Assembly 494 na contig00124 unplaced-scaffold na na JAPJDN010000124.1 = NZ_JAPJDN010000124.1 Primary Assembly 420 na contig00125 unplaced-scaffold na na JAPJDN010000125.1 = NZ_JAPJDN010000125.1 Primary Assembly 370 na contig00126 unplaced-scaffold na na JAPJDN010000126.1 = NZ_JAPJDN010000126.1 Primary Assembly 351 na contig00127 unplaced-scaffold na na JAPJDN010000127.1 = NZ_JAPJDN010000127.1 Primary Assembly 337 na contig00128 unplaced-scaffold na na JAPJDN010000128.1 = NZ_JAPJDN010000128.1 Primary Assembly 308 na contig00129 unplaced-scaffold na na JAPJDN010000129.1 = NZ_JAPJDN010000129.1 Primary Assembly 228 na contig00130 unplaced-scaffold na na JAPJDN010000130.1 = NZ_JAPJDN010000130.1 Primary Assembly 222 na contig00131 unplaced-scaffold na na JAPJDN010000131.1 = NZ_JAPJDN010000131.1 Primary Assembly 222 na contig00132 unplaced-scaffold na na JAPJDN010000132.1 = NZ_JAPJDN010000132.1 Primary Assembly 221 na contig00133 unplaced-scaffold na na JAPJDN010000133.1 = NZ_JAPJDN010000133.1 Primary Assembly 221 na contig00134 unplaced-scaffold na na JAPJDN010000134.1 = NZ_JAPJDN010000134.1 Primary Assembly 221 na contig00135 unplaced-scaffold na na JAPJDN010000135.1 = NZ_JAPJDN010000135.1 Primary Assembly 221 na contig00136 unplaced-scaffold na na JAPJDN010000136.1 = NZ_JAPJDN010000136.1 Primary Assembly 221 na contig00137 unplaced-scaffold na na JAPJDN010000137.1 = NZ_JAPJDN010000137.1 Primary Assembly 221 na contig00138 unplaced-scaffold na na JAPJDN010000138.1 = NZ_JAPJDN010000138.1 Primary Assembly 220 na contig00139 unplaced-scaffold na na JAPJDN010000139.1 = NZ_JAPJDN010000139.1 Primary Assembly 220 na contig00140 unplaced-scaffold na na JAPJDN010000140.1 = NZ_JAPJDN010000140.1 Primary Assembly 220 na contig00141 unplaced-scaffold na na JAPJDN010000141.1 = NZ_JAPJDN010000141.1 Primary Assembly 220 na contig00142 unplaced-scaffold na na JAPJDN010000142.1 = NZ_JAPJDN010000142.1 Primary Assembly 219 na contig00143 unplaced-scaffold na na JAPJDN010000143.1 = NZ_JAPJDN010000143.1 Primary Assembly 212 na