# Assembly name: aSpeBom1.2.pri # Organism name: Spea bombifrons (plains spadefoot toad) # Isolate: aSpeBom1 # Sex: female # Taxid: 233779 # BioSample: SAMN28408467 # BioProject: PRJNA838345 # Submitter: Vertebrate Genomes Project # Date: 2022-12-27 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAPZAL01 # Assembly method: HiFiasm v. 0.16.1 + galaxy1; purge_dups v. 1.2.5 + galaxy3; Bionano Solve v. 3.7.0 + galaxy0; Salsa v. 2.3 + galaxy2; gEVAL manual curation v. 2022-04-01; VGP pipeline v. 2.0 # Expected final version: no # Genome coverage: 35.45x # Sequencing technology: PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C # RefSeq category: Representative Genome # GenBank assembly accession: GCA_027358695.2 # RefSeq assembly accession: GCF_027358695.1 # RefSeq assembly and GenBank assemblies identical: yes # Linked assembly: GCA_027382365.2 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_027359025.2 GCF_027359025.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM049770.1 = NC_071087.1 Primary Assembly 165483513 na SUPER_2 assembled-molecule 2 Chromosome CM049771.1 = NC_071088.1 Primary Assembly 143220838 na SUPER_3 assembled-molecule 3 Chromosome CM049772.1 = NC_071089.1 Primary Assembly 123686920 na SUPER_4 assembled-molecule 4 Chromosome CM049773.1 = NC_071090.1 Primary Assembly 114150385 na SUPER_5 assembled-molecule 5 Chromosome CM049774.1 = NC_071091.1 Primary Assembly 109868144 na SUPER_6 assembled-molecule 6 Chromosome CM049775.1 = NC_071092.1 Primary Assembly 50326596 na SUPER_7 assembled-molecule 7 Chromosome CM049776.1 = NC_071093.1 Primary Assembly 47423817 na SUPER_8 assembled-molecule 8 Chromosome CM049777.1 = NC_071094.1 Primary Assembly 47031220 na SUPER_9 assembled-molecule 9 Chromosome CM049778.1 = NC_071095.1 Primary Assembly 42710922 na SUPER_10 assembled-molecule 10 Chromosome CM049779.1 = NC_071096.1 Primary Assembly 41775379 na SUPER_11 assembled-molecule 11 Chromosome CM049780.1 = NC_071097.1 Primary Assembly 38385806 na SUPER_12 assembled-molecule 12 Chromosome CM049781.1 = NC_071098.1 Primary Assembly 34179284 na SUPER_13 assembled-molecule 13 Chromosome CM049782.1 = NC_071099.1 Primary Assembly 29266171 na SUPER_9_unloc_1 unlocalized-scaffold 9 Chromosome JAPZAL010000010.1 = NW_026520964.1 Primary Assembly 65734 na scaffold_79 unplaced-scaffold na na JAPZAL010000059.1 = NW_026520965.1 Primary Assembly 29498 na scaffold_84 unplaced-scaffold na na JAPZAL010000063.1 = NW_026520966.1 Primary Assembly 26593 na scaffold_90 unplaced-scaffold na na JAPZAL010000068.1 = NW_026520967.1 Primary Assembly 24339 na