track assembly
longLabel Assembly
shortLabel Assembly
visibility pack
colorByStrand 150,100,30 230,170,40
color 150,100,30
altColor 230,170,40
bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.assembly.bb
type bigBed 6
html html/GCF_027406575.1_mNycCou1.pri.assembly
searchIndex name
searchTrix ixIxx/GCF_027406575.1_mNycCou1.pri.assembly.ix
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
group map

track cytoBandIdeo
shortLabel Chromosome Band (Ideogram)
longLabel Ideogram for Orientation
group map
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.cytoBand.bb

track gc5Base
shortLabel GC Percent
longLabel GC Percent in 5-Base Windows
group map
visibility full
autoScale Off
maxHeightPixels 128:36:16
graphTypeDefault Bar
gridDefault OFF
windowingFunction Mean
color 0,0,0
altColor 128,128,128
viewLimits 30:70
type bigWig 0 100
bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.gc5Base.bw
html html/GCF_027406575.1_mNycCou1.pri.gc5Base

track tanDups
shortLabel Tandem Dups
longLabel Paired identical sequences
compositeTrack on
visibility hide
type bigBed 12
group map
html html/GCF_027406575.1_mNycCou1.pri.tanDups

    track gapOverlap
    parent tanDups on
    shortLabel Gap Overlaps
    longLabel Paired exactly identical sequence on each side of a gap
    bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.gapOverlap.bb
    type bigBed 12

    track tandemDups
    parent tanDups on
    shortLabel Tandem Dups
    longLabel Paired exactly identical sequence survey over entire genome assembly
    bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.tandemDups.bb
    type bigBed 12

track repeatMasker
shortLabel RepeatMasker
longLabel RepeatMasker Repetitive Elements
type bigRmsk 9 +
visibility pack
group varRep
bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.rmsk.bb
xrefDataUrl bbi/GCF_027406575.1_mNycCou1.pri.rmsk.align.bb
maxWindowToDraw 5000000
html html/GCF_027406575.1_mNycCou1.pri.repeatMasker

track repeatModeler
shortLabel RepeatModeler
longLabel RepeatModeler Repetitive Elements
type bigRmsk 9 +
visibility pack
group varRep
bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.rModel.bb
xrefDataUrl bbi/GCF_027406575.1_mNycCou1.pri.rModel.align.bb
maxWindowToDraw 5000000
html html/GCF_027406575.1_mNycCou1.pri.repeatModeler

track simpleRepeat
shortLabel Simple Repeats
longLabel Simple Tandem Repeats by TRF
group varRep
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.simpleRepeat.bb
html html/GCF_027406575.1_mNycCou1.pri.simpleRepeat

track refSeqComposite
compositeTrack on
shortLabel NCBI RefSeq
longLabel RefSeq gene predictions from NCBI
group genes
visibility pack
type bigBed
dragAndDrop subTracks
allButtonPair on
dataVersion NCBI RefSeq GCF_027406575.1-RS_2023_01 (2023-02-10)
html html/GCF_027406575.1_mNycCou1.pri.refSeqComposite
priority 2

        track ncbiRefSeq
        parent refSeqComposite on
        color 12,12,120
        altColor 120,12,12
        shortLabel RefSeq All
        type bigGenePred
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_027406575.1_mNycCou1.pri.ncbiRefSeq.ix
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.ncbiRefSeq.bb
        longLabel NCBI RefSeq genes, curated and predicted sets (NM_*, XM_*, NR_*, XR_*, NP_* or YP_*)
        idXref ncbiRefSeqLink mrnaAcc name
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 1

        track ncbiRefSeqPredicted
        color 12,12,120
        parent refSeqComposite on
        shortLabel RefSeq Predicted
        longLabel NCBI RefSeq genes, predicted subset (XM_* or XR_*)
        type bigGenePred
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_027406575.1_mNycCou1.pri.ncbiRefSeqPredicted.ix
        idXref ncbiRefSeqLink mrnaAcc name
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.ncbiRefSeqPredicted.bb
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 3

        track ncbiRefSeqOther
        color 32,32,32
        parent refSeqComposite on
        shortLabel RefSeq Other
        longLabel NCBI RefSeq other annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)
        priority 4
        searchIndex name
        searchTrix ixIxx/GCF_027406575.1_mNycCou1.pri.ncbiRefSeqOther.ix
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.ncbiRefSeqOther.bb
        type bigBed 12 +
        labelFields name
        skipEmptyFields on
        urls GeneID="https://www.ncbi.nlm.nih.gov/gene/$$" MIM="https://www.ncbi.nlm.nih.gov/omim/$$" HGNC="http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" FlyBase="http://flybase.org/reports/$$" WormBase="http://www.wormbase.org/db/gene/gene?name=$$" RGD="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" SGD="https://www.yeastgenome.org/locus/$$" miRBase="http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$$" ZFIN="https://zfin.org/$$" MGI="http://www.informatics.jax.org/marker/$$"

        track ncbiRefSeqPsl
        priority 5
        parent refSeqComposite off
        shortLabel RefSeq Alignments
        longLabel RefSeq Alignments of RNAs
        type bigPsl
        searchIndex name
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.bigPsl.bb
        indelDoubleInsert on
        indelQueryInsert on
        showDiffBasesAllScales .
        showDiffBasesMaxZoom 10000.0
        showCdsMaxZoom 10000.0
        showCdsAllScales .
        baseColorDefault diffCodons
        pslSequence no
        baseColorUseSequence lfExtra
        baseColorUseCds table given
        color 0,0,0

track cpgIslands
compositeTrack on
shortLabel CpG Islands
longLabel CpG Islands (Islands < 300 Bases are Light Green)
group regulation
visibility pack
type bigBed 4 +
html html/GCF_027406575.1_mNycCou1.pri.cpgIslands

    track cpgIslandExt
    parent cpgIslands off
    shortLabel CpG Islands
    longLabel CpG Islands (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 1
    bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.cpgIslandExt.bb

    track cpgIslandExtUnmasked
    parent cpgIslands on
    shortLabel Unmasked CpG
    longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 2
    bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.cpgIslandExtUnmasked.bb

track windowMasker
shortLabel WM + SDust
longLabel Genomic Intervals Masked by WindowMasker + SDust
group varRep
visibility dense
type bigBed 3
bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.windowMasker.bb
html html/GCF_027406575.1_mNycCou1.pri.windowMasker

track allGaps
shortLabel All Gaps
longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps
group map
visibility dense
type bigBed 3
bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.allGaps.bb
html html/GCF_027406575.1_mNycCou1.pri.allGaps

track augustus
shortLabel Augustus
longLabel Augustus Gene Predictions
group genes
visibility dense
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.augustus.bb
html html/GCF_027406575.1_mNycCou1.pri.augustus

track xenoRefGene
shortLabel RefSeq mRNAs
longLabel RefSeq mRNAs mapped to this assembly
group rna
visibility pack
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.xenoRefGene.bb
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
labelFields name,geneName,geneName2
defaultLabelFields geneName
searchIndex name
searchTrix ixIxx/GCF_027406575.1_mNycCou1.pri.xenoRefGene.ix
html html/GCF_027406575.1_mNycCou1.pri.xenoRefGene

track GCF_027406575.1_mNycCou1.priChainNet
compositeTrack on
shortLabel Chain/Net
longLabel Chain and Net alignments to target sequence: GCF_027406575.1_mNycCou1.pri
subGroup1 view Views chain=Chains net=Nets
subGroup2 species Species s000=GCA_028858775.2 s001=GCA_028878055.2 s002=GCA_028885625.2 s003=GCA_028885655.2 s004=GCA_029281585.2 s005=GCA_029289425.2 s006=GCF_011100555.1 s007=GCF_020740605.2 s008=hg38 s009=hs1
subGroup3 clade Clade c00=human
dragAndDrop subTracks
visibility hide
group compGeno
color 0,0,0
altColor 255,255,0
type bed 3
chainLinearGap loose
chainMinScore 5000
dimensions dimensionX=clade dimensionY=species
sortOrder species=+ view=+ clade=+
configurable on
html html/GCF_027406575.1_mNycCou1.pri.chainNet

    track GCF_027406575.1_mNycCou1.priChainNetViewchain
    shortLabel  Chains
    view chain
    visibility pack
    subTrack GCF_027406575.1_mNycCou1.priChainNet
    spectrum on

        track chainGCA_028858775.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s000 clade=c00
        shortLabel GCA_028858775.2 Chain
        longLabel GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_028858775.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainGCA_028858775.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainGCA_028858775.2Link.bb
        otherDb GCA_028858775.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 1

        track chainSynGCA_028858775.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s000 clade=c00
        shortLabel GCA_028858775.2 synChain
        longLabel GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri (2024-01-08) Syntenic Chained Alignments
        type bigChain GCA_028858775.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainSynGCA_028858775.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainSynGCA_028858775.2Link.bb
        otherDb GCA_028858775.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 2

        track chainRBestGCA_028858775.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s000 clade=c00
        shortLabel GCA_028858775.2 rbChain
        longLabel GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri (2024-01-08) Reciprocal Best Chained Alignments
        type bigChain GCA_028858775.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainRBestGCA_028858775.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainRBestGCA_028858775.2Link.bb
        otherDb GCA_028858775.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 3

        track chainGCA_028878055.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s001 clade=c00
        shortLabel GCA_028878055.2 Chain
        longLabel GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028878055.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainGCA_028878055.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainGCA_028878055.2Link.bb
        otherDb GCA_028878055.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 4

        track chainSynGCA_028878055.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s001 clade=c00
        shortLabel GCA_028878055.2 synChain
        longLabel GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Syntenic Chained Alignments
        type bigChain GCA_028878055.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainSynGCA_028878055.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainSynGCA_028878055.2Link.bb
        otherDb GCA_028878055.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 5

        track chainRBestGCA_028878055.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s001 clade=c00
        shortLabel GCA_028878055.2 rbChain
        longLabel GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Reciprocal Best Chained Alignments
        type bigChain GCA_028878055.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainRBestGCA_028878055.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainRBestGCA_028878055.2Link.bb
        otherDb GCA_028878055.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 6

        track chainGCA_028885625.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s002 clade=c00
        shortLabel GCA_028885625.2 Chain
        longLabel GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_028885625.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainGCA_028885625.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainGCA_028885625.2Link.bb
        otherDb GCA_028885625.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 7

        track chainSynGCA_028885625.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s002 clade=c00
        shortLabel GCA_028885625.2 synChain
        longLabel GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Syntenic Chained Alignments
        type bigChain GCA_028885625.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainSynGCA_028885625.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainSynGCA_028885625.2Link.bb
        otherDb GCA_028885625.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 8

        track chainRBestGCA_028885625.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s002 clade=c00
        shortLabel GCA_028885625.2 rbChain
        longLabel GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Reciprocal Best Chained Alignments
        type bigChain GCA_028885625.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainRBestGCA_028885625.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainRBestGCA_028885625.2Link.bb
        otherDb GCA_028885625.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 9

        track chainGCA_028885655.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s003 clade=c00
        shortLabel GCA_028885655.2 Chain
        longLabel GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028885655.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainGCA_028885655.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainGCA_028885655.2Link.bb
        otherDb GCA_028885655.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 10

        track chainSynGCA_028885655.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s003 clade=c00
        shortLabel GCA_028885655.2 synChain
        longLabel GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Syntenic Chained Alignments
        type bigChain GCA_028885655.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainSynGCA_028885655.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainSynGCA_028885655.2Link.bb
        otherDb GCA_028885655.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 11

        track chainRBestGCA_028885655.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s003 clade=c00
        shortLabel GCA_028885655.2 rbChain
        longLabel GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Reciprocal Best Chained Alignments
        type bigChain GCA_028885655.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainRBestGCA_028885655.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainRBestGCA_028885655.2Link.bb
        otherDb GCA_028885655.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 12

        track chainGCA_029281585.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s004 clade=c00
        shortLabel GCA_029281585.2 Chain
        longLabel GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_029281585.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainGCA_029281585.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainGCA_029281585.2Link.bb
        otherDb GCA_029281585.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 13

        track chainSynGCA_029281585.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s004 clade=c00
        shortLabel GCA_029281585.2 synChain
        longLabel GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri (2024-01-08) Syntenic Chained Alignments
        type bigChain GCA_029281585.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainSynGCA_029281585.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainSynGCA_029281585.2Link.bb
        otherDb GCA_029281585.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 14

        track chainRBestGCA_029281585.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s004 clade=c00
        shortLabel GCA_029281585.2 rbChain
        longLabel GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri (2024-01-08) Reciprocal Best Chained Alignments
        type bigChain GCA_029281585.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainRBestGCA_029281585.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainRBestGCA_029281585.2Link.bb
        otherDb GCA_029281585.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 15

        track chainGCA_029289425.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s005 clade=c00
        shortLabel GCA_029289425.2 Chain
        longLabel GCA_029289425.2_NHGRI_mPanPan1-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_029289425.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainGCA_029289425.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainGCA_029289425.2Link.bb
        otherDb GCA_029289425.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 16

        track chainSynGCA_029289425.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s005 clade=c00
        shortLabel GCA_029289425.2 synChain
        longLabel GCA_029289425.2_NHGRI_mPanPan1-v2.0_pri (2024-01-08) Syntenic Chained Alignments
        type bigChain GCA_029289425.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainSynGCA_029289425.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainSynGCA_029289425.2Link.bb
        otherDb GCA_029289425.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 17

        track chainRBestGCA_029289425.2
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s005 clade=c00
        shortLabel GCA_029289425.2 rbChain
        longLabel GCA_029289425.2_NHGRI_mPanPan1-v2.0_pri (2024-01-08) Reciprocal Best Chained Alignments
        type bigChain GCA_029289425.2
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainRBestGCA_029289425.2.bb
        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainRBestGCA_029289425.2Link.bb
        otherDb GCA_029289425.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 18

        track chainGCF_011100555.1
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
        subGroups view=chain species=s006 clade=c00
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        longLabel GCF_011100555.1_mCalJa1.2.pat.X (2021-04-28) Chained Alignments
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        priority 25

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        priority 26

        track chainRBestHg38
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        otherDb hg38
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 27

        track chainHs1
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
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        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainHs1Link.bb
        otherDb hs1
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 28

        track chainSynHs1
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
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        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainSynHs1Link.bb
        otherDb hs1
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 29

        track chainRBestHs1
        subTrack GCF_027406575.1_mNycCou1.priChainNetViewchain off
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        shortLabel hs1 rbChain
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        linkDataUrl bbi/GCF_027406575.1_mNycCou1.pri.chainRBestHs1Link.bb
        otherDb hs1
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 30

    track GCF_027406575.1_mNycCou1.priMafNetViewnet
    shortLabel Nets
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    subTrack GCF_027406575.1_mNycCou1.priChainNet

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        subGroups view=net species=s000 clade=c00
        shortLabel GCA_028858775.2 synNet
        longLabel GCA_028858775.2 (some date) Syntenic Net Alignment
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        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 1

        track rbestNetGCA_028858775.2
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        speciesOrder GCA_028858775.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 2

        track synNetGCA_028878055.2
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
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        shortLabel GCA_028878055.2 synNet
        longLabel GCA_028878055.2 (some date) Syntenic Net Alignment
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        speciesOrder GCA_028878055.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 3

        track rbestNetGCA_028878055.2
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
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        shortLabel GCA_028878055.2 rbestNet
        longLabel GCA_028878055.2 (some date) Reciprocal Best Net Alignment
        type bigMaf
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        summary bbi/GCF_027406575.1_mNycCou1.pri.GCA_028878055.2.rbestNet.summary.bb
        speciesOrder GCA_028878055.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 4

        track synNetGCA_028885625.2
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
        subGroups view=net species=s002 clade=c00
        shortLabel GCA_028885625.2 synNet
        longLabel GCA_028885625.2 (some date) Syntenic Net Alignment
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        summary bbi/GCF_027406575.1_mNycCou1.pri.GCA_028885625.2.synNet.summary.bb
        speciesOrder GCA_028885625.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 5

        track rbestNetGCA_028885625.2
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
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        shortLabel GCA_028885625.2 rbestNet
        longLabel GCA_028885625.2 (some date) Reciprocal Best Net Alignment
        type bigMaf
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        summary bbi/GCF_027406575.1_mNycCou1.pri.GCA_028885625.2.rbestNet.summary.bb
        speciesOrder GCA_028885625.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 6

        track synNetGCA_028885655.2
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
        subGroups view=net species=s003 clade=c00
        shortLabel GCA_028885655.2 synNet
        longLabel GCA_028885655.2 (some date) Syntenic Net Alignment
        type bigMaf
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        summary bbi/GCF_027406575.1_mNycCou1.pri.GCA_028885655.2.synNet.summary.bb
        speciesOrder GCA_028885655.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 7

        track rbestNetGCA_028885655.2
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
        subGroups view=net species=s003 clade=c00
        shortLabel GCA_028885655.2 rbestNet
        longLabel GCA_028885655.2 (some date) Reciprocal Best Net Alignment
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        speciesOrder GCA_028885655.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 8

        track synNetGCA_029281585.2
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
        subGroups view=net species=s004 clade=c00
        shortLabel GCA_029281585.2 synNet
        longLabel GCA_029281585.2 (some date) Syntenic Net Alignment
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        speciesOrder GCA_029281585.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 9

        track rbestNetGCA_029281585.2
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
        subGroups view=net species=s004 clade=c00
        shortLabel GCA_029281585.2 rbestNet
        longLabel GCA_029281585.2 (some date) Reciprocal Best Net Alignment
        type bigMaf
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        summary bbi/GCF_027406575.1_mNycCou1.pri.GCA_029281585.2.rbestNet.summary.bb
        speciesOrder GCA_029281585.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 10

        track synNetGCA_029289425.2
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
        subGroups view=net species=s005 clade=c00
        shortLabel GCA_029289425.2 synNet
        longLabel GCA_029289425.2 (some date) Syntenic Net Alignment
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        summary bbi/GCF_027406575.1_mNycCou1.pri.GCA_029289425.2.synNet.summary.bb
        speciesOrder GCA_029289425.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 11

        track rbestNetGCA_029289425.2
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
        subGroups view=net species=s005 clade=c00
        shortLabel GCA_029289425.2 rbestNet
        longLabel GCA_029289425.2 (some date) Reciprocal Best Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.GCA_029289425.2.rbestNet.bb
        summary bbi/GCF_027406575.1_mNycCou1.pri.GCA_029289425.2.rbestNet.summary.bb
        speciesOrder GCA_029289425.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 12

        track synNetGCF_011100555.1
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
        subGroups view=net species=s006 clade=c00
        shortLabel GCF_011100555.1 synNet
        longLabel GCF_011100555.1 (some date) Syntenic Net Alignment
        type bigMaf
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        summary bbi/GCF_027406575.1_mNycCou1.pri.GCF_011100555.1.synNet.summary.bb
        speciesOrder GCF_011100555.1
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 13

        track rbestNetGCF_011100555.1
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
        subGroups view=net species=s006 clade=c00
        shortLabel GCF_011100555.1 rbestNet
        longLabel GCF_011100555.1 (some date) Reciprocal Best Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.GCF_011100555.1.rbestNet.bb
        summary bbi/GCF_027406575.1_mNycCou1.pri.GCF_011100555.1.rbestNet.summary.bb
        speciesOrder GCF_011100555.1
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 14

        track synNetGCF_020740605.2
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
        subGroups view=net species=s007 clade=c00
        shortLabel GCF_020740605.2 synNet
        longLabel GCF_020740605.2 (some date) Syntenic Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.GCF_020740605.2.synNet.bb
        summary bbi/GCF_027406575.1_mNycCou1.pri.GCF_020740605.2.synNet.summary.bb
        speciesOrder GCF_020740605.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 15

        track rbestNetGCF_020740605.2
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
        subGroups view=net species=s007 clade=c00
        shortLabel GCF_020740605.2 rbestNet
        longLabel GCF_020740605.2 (some date) Reciprocal Best Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.GCF_020740605.2.rbestNet.bb
        summary bbi/GCF_027406575.1_mNycCou1.pri.GCF_020740605.2.rbestNet.summary.bb
        speciesOrder GCF_020740605.2
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 16

        track synNetHg38
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
        subGroups view=net species=s008 clade=c00
        shortLabel hg38 synNet
        longLabel hg38 (some date) Syntenic Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_027406575.1_mNycCou1.pri.hg38.synNet.bb
        summary bbi/GCF_027406575.1_mNycCou1.pri.hg38.synNet.summary.bb
        speciesOrder hg38
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 17

        track rbestNetHg38
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
        subGroups view=net species=s008 clade=c00
        shortLabel hg38 rbestNet
        longLabel hg38 (some date) Reciprocal Best Net Alignment
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        speciesOrder hg38
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 18

        track synNetHs1
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
        subGroups view=net species=s009 clade=c00
        shortLabel hs1 synNet
        longLabel hs1 (some date) Syntenic Net Alignment
        type bigMaf
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        summary bbi/GCF_027406575.1_mNycCou1.pri.hs1.synNet.summary.bb
        speciesOrder hs1
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 19

        track rbestNetHs1
        parent GCF_027406575.1_mNycCou1.priMafNetViewnet
        subGroups view=net species=s009 clade=c00
        shortLabel hs1 rbestNet
        longLabel hs1 (some date) Reciprocal Best Net Alignment
        type bigMaf
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        speciesOrder hs1
        html html/GCF_027406575.1_mNycCou1.pri.chainNet
        priority 20