# Assembly name: mSorAra2.pri # Organism name: Sorex araneus (European shrew) # Isolate: mSorAra2 # Sex: male # Taxid: 42254 # BioSample: SAMN32477717 # BioProject: PRJNA916523 # Submitter: Vertebrate Genomes Project # Date: 2023-01-09 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAQBIA01 # Assembly method: HiFiasm v. 0.15.4 + galaxy0; purge_dups v. 1.2.5 + galaxy3; Bionano Solve v. 3.6.1 + galaxy2; gEVAL manual curtion v. 2022-07-07 # Expected final version: no # Genome coverage: 35.71x # Sequencing technology: PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_027595985.1 # RefSeq assembly accession: GCF_027595985.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_027595995.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_027596015.1 GCF_027596015.1 Primary Assembly ## GCA_027596025.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM050716.1 = NC_073302.1 Primary Assembly 452700413 na SUPER_2 assembled-molecule 2 Chromosome CM050717.1 = NC_073303.1 Primary Assembly 381072001 na SUPER_3 assembled-molecule 3 Chromosome CM050718.1 = NC_073304.1 Primary Assembly 239582062 na SUPER_4 assembled-molecule 4 Chromosome CM050719.1 = NC_073305.1 Primary Assembly 222963043 na SUPER_5 assembled-molecule 5 Chromosome CM050720.1 = NC_073306.1 Primary Assembly 216565905 na SUPER_6 assembled-molecule 6 Chromosome CM050721.1 = NC_073307.1 Primary Assembly 169026226 na SUPER_7 assembled-molecule 7 Chromosome CM050722.1 = NC_073308.1 Primary Assembly 77757119 na SUPER_8 assembled-molecule 8 Chromosome CM050723.1 = NC_073309.1 Primary Assembly 71220267 na SUPER_9 assembled-molecule 9 Chromosome CM050724.1 = NC_073310.1 Primary Assembly 69197946 na SUPER_10 assembled-molecule 10 Chromosome CM050725.1 = NC_073311.1 Primary Assembly 67946173 na SUPER_11 assembled-molecule 11 Chromosome CM050726.1 = NC_073312.1 Primary Assembly 59732558 na SUPER_X assembled-molecule X Chromosome CM050727.1 = NC_073313.1 Primary Assembly 374364821 na SUPER_X_unloc_1 unlocalized-scaffold X Chromosome JAQBIA010000002.1 = NW_026570955.1 Primary Assembly 324167 na SUPER_X_unloc_2 unlocalized-scaffold X Chromosome JAQBIA010000003.1 = NW_026570962.1 Primary Assembly 307600 na SUPER_X_unloc_3 unlocalized-scaffold X Chromosome JAQBIA010000004.1 = NW_026570963.1 Primary Assembly 246035 na SUPER_X_unloc_4 unlocalized-scaffold X Chromosome JAQBIA010000005.1 = NW_026570964.1 Primary Assembly 203781 na SUPER_X_unloc_5 unlocalized-scaffold X Chromosome JAQBIA010000006.1 = NW_026570965.1 Primary Assembly 143379 na SUPER_X_unloc_6 unlocalized-scaffold X Chromosome JAQBIA010000007.1 = NW_026570966.1 Primary Assembly 134457 na SUPER_X_unloc_7 unlocalized-scaffold X Chromosome JAQBIA010000008.1 = NW_026570967.1 Primary Assembly 134180 na SUPER_X_unloc_8 unlocalized-scaffold X Chromosome JAQBIA010000009.1 = NW_026570968.1 Primary Assembly 126305 na SUPER_X_unloc_9 unlocalized-scaffold X Chromosome JAQBIA010000010.1 = NW_026570969.1 Primary Assembly 122314 na SUPER_X_unloc_10 unlocalized-scaffold X Chromosome JAQBIA010000011.1 = NW_026570956.1 Primary Assembly 120480 na SUPER_X_unloc_11 unlocalized-scaffold X Chromosome JAQBIA010000012.1 = NW_026570957.1 Primary Assembly 113931 na SUPER_X_unloc_12 unlocalized-scaffold X Chromosome JAQBIA010000013.1 = NW_026570958.1 Primary Assembly 98247 na SUPER_X_unloc_13 unlocalized-scaffold X Chromosome JAQBIA010000014.1 = NW_026570959.1 Primary Assembly 83324 na SUPER_X_unloc_14 unlocalized-scaffold X Chromosome JAQBIA010000015.1 = NW_026570960.1 Primary Assembly 49169 na SUPER_X_unloc_15 unlocalized-scaffold X Chromosome JAQBIA010000016.1 = NW_026570961.1 Primary Assembly 530683 na scaffold_143 unplaced-scaffold na na JAQBIA010000029.1 = NW_026570917.1 Primary Assembly 64543 na scaffold_160 unplaced-scaffold na na JAQBIA010000030.1 = NW_026570918.1 Primary Assembly 53343 na scaffold_163 unplaced-scaffold na na JAQBIA010000031.1 = NW_026570919.1 Primary Assembly 51189 na scaffold_167 unplaced-scaffold na na JAQBIA010000032.1 = NW_026570920.1 Primary Assembly 48302 na scaffold_168 unplaced-scaffold na na JAQBIA010000033.1 = NW_026570921.1 Primary Assembly 46869 na scaffold_170 unplaced-scaffold na na JAQBIA010000034.1 = NW_026570922.1 Primary Assembly 45009 na scaffold_174 unplaced-scaffold na na JAQBIA010000035.1 = NW_026570923.1 Primary Assembly 43882 na scaffold_183 unplaced-scaffold na na JAQBIA010000036.1 = NW_026570924.1 Primary Assembly 41911 na scaffold_185 unplaced-scaffold na na JAQBIA010000037.1 = NW_026570925.1 Primary Assembly 41325 na scaffold_190 unplaced-scaffold na na JAQBIA010000038.1 = NW_026570926.1 Primary Assembly 39038 na scaffold_196 unplaced-scaffold na na JAQBIA010000039.1 = NW_026570927.1 Primary Assembly 35348 na scaffold_198 unplaced-scaffold na na JAQBIA010000040.1 = NW_026570928.1 Primary Assembly 34434 na scaffold_202 unplaced-scaffold na na JAQBIA010000041.1 = NW_026570929.1 Primary Assembly 31416 na scaffold_204 unplaced-scaffold na na JAQBIA010000042.1 = NW_026570930.1 Primary Assembly 30648 na scaffold_207 unplaced-scaffold na na JAQBIA010000043.1 = NW_026570931.1 Primary Assembly 29308 na scaffold_208 unplaced-scaffold na na JAQBIA010000044.1 = NW_026570932.1 Primary Assembly 27427 na scaffold_209 unplaced-scaffold na na JAQBIA010000045.1 = NW_026570933.1 Primary Assembly 27175 na scaffold_211 unplaced-scaffold na na JAQBIA010000046.1 = NW_026570934.1 Primary Assembly 26026 na scaffold_212 unplaced-scaffold na na JAQBIA010000047.1 = NW_026570935.1 Primary Assembly 25899 na scaffold_213 unplaced-scaffold na na JAQBIA010000048.1 = NW_026570936.1 Primary Assembly 25388 na scaffold_214 unplaced-scaffold na na JAQBIA010000049.1 = NW_026570937.1 Primary Assembly 24966 na scaffold_215 unplaced-scaffold na na JAQBIA010000050.1 = NW_026570938.1 Primary Assembly 24899 na scaffold_216 unplaced-scaffold na na JAQBIA010000051.1 = NW_026570939.1 Primary Assembly 24234 na scaffold_217 unplaced-scaffold na na JAQBIA010000052.1 = NW_026570940.1 Primary Assembly 23819 na scaffold_218 unplaced-scaffold na na JAQBIA010000053.1 = NW_026570941.1 Primary Assembly 23768 na scaffold_219 unplaced-scaffold na na JAQBIA010000054.1 = NW_026570942.1 Primary Assembly 23379 na scaffold_220 unplaced-scaffold na na JAQBIA010000055.1 = NW_026570943.1 Primary Assembly 23231 na scaffold_221 unplaced-scaffold na na JAQBIA010000056.1 = NW_026570944.1 Primary Assembly 20295 na scaffold_222 unplaced-scaffold na na JAQBIA010000057.1 = NW_026570945.1 Primary Assembly 20205 na scaffold_223 unplaced-scaffold na na JAQBIA010000058.1 = NW_026570946.1 Primary Assembly 20027 na scaffold_224 unplaced-scaffold na na JAQBIA010000059.1 = NW_026570947.1 Primary Assembly 19209 na scaffold_226 unplaced-scaffold na na JAQBIA010000060.1 = NW_026570948.1 Primary Assembly 18369 na scaffold_227 unplaced-scaffold na na JAQBIA010000061.1 = NW_026570949.1 Primary Assembly 18294 na scaffold_229 unplaced-scaffold na na JAQBIA010000062.1 = NW_026570950.1 Primary Assembly 17076 na scaffold_230 unplaced-scaffold na na JAQBIA010000063.1 = NW_026570951.1 Primary Assembly 16797 na scaffold_231 unplaced-scaffold na na JAQBIA010000064.1 = NW_026570952.1 Primary Assembly 16668 na scaffold_232 unplaced-scaffold na na JAQBIA010000065.1 = NW_026570953.1 Primary Assembly 13328 na scaffold_233 unplaced-scaffold na na JAQBIA010000066.1 = NW_026570954.1 Primary Assembly 9918 na ptg000002l_rotated assembled-molecule MT Mitochondrion CM050753.1 <> na non-nuclear 17325 na