# Assembly name: RoL_Ddac_1.1 # Organism name: Dunckerocampus dactyliophorus (ringed pipefish) # Isolate: RoL2022-P2 # Sex: male # Taxid: 161453 # BioSample: SAMN31865020 # BioProject: PRJNA851781 # Submitter: University of Idaho at Moscow # Date: 2023-01-13 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAPTFN01 # Assembly method: Hifiasm v. 0.16.1 # Expected final version: no # Genome coverage: 55.0x # Sequencing technology: Pacbio HiFi; Phase Genomics Hi-C # RefSeq category: Representative Genome # GenBank assembly accession: GCA_027744805.2 # RefSeq assembly accession: GCF_027744805.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_027744985.2 GCF_027744985.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name HiC_scaffold_1 assembled-molecule 1 Chromosome CM050978.1 = NC_072819.1 Primary Assembly 51887073 na HiC_scaffold_2 assembled-molecule 2 Chromosome CM050979.1 = NC_072820.1 Primary Assembly 51836318 na HiC_scaffold_3 assembled-molecule 3 Chromosome CM050980.1 = NC_072821.1 Primary Assembly 39860951 na HiC_scaffold_4 assembled-molecule 4 Chromosome CM050981.1 = NC_072822.1 Primary Assembly 37920988 na HiC_scaffold_5 assembled-molecule 5 Chromosome CM050982.1 = NC_072823.1 Primary Assembly 34470409 na HiC_scaffold_6 assembled-molecule 6 Chromosome CM050983.1 = NC_072824.1 Primary Assembly 33844509 na HiC_scaffold_7 assembled-molecule 7 Chromosome CM050984.1 = NC_072825.1 Primary Assembly 32977772 na HiC_scaffold_8 assembled-molecule 8 Chromosome CM050985.1 = NC_072826.1 Primary Assembly 32761191 na HiC_scaffold_9 assembled-molecule 9 Chromosome CM050986.1 = NC_072827.1 Primary Assembly 32514960 na HiC_scaffold_10 assembled-molecule 10 Chromosome CM050987.1 = NC_072828.1 Primary Assembly 32008796 na HiC_scaffold_11 assembled-molecule 11 Chromosome CM050988.1 = NC_072829.1 Primary Assembly 31557025 na HiC_scaffold_12 assembled-molecule 12 Chromosome CM050989.1 = NC_072830.1 Primary Assembly 30796809 na HiC_scaffold_13 assembled-molecule 13 Chromosome CM050990.1 = NC_072831.1 Primary Assembly 30794313 na HiC_scaffold_14 assembled-molecule 14 Chromosome CM050991.1 = NC_072832.1 Primary Assembly 30196473 na HiC_scaffold_15 assembled-molecule 15 Chromosome CM050992.1 = NC_072833.1 Primary Assembly 28255146 na HiC_scaffold_16 assembled-molecule 16 Chromosome CM050993.1 = NC_072834.1 Primary Assembly 25333025 na HiC_scaffold_17 assembled-molecule 17 Chromosome CM050994.1 = NC_072835.1 Primary Assembly 24283049 na HiC_scaffold_18 assembled-molecule 18 Chromosome CM050995.1 = NC_072836.1 Primary Assembly 22121542 na HiC_scaffold_19 assembled-molecule 19 Chromosome CM050996.1 = NC_072837.1 Primary Assembly 20760892 na HiC_scaffold_20 assembled-molecule 20 Chromosome CM050997.1 = NC_072838.1 Primary Assembly 19397776 na HiC_scaffold_21 assembled-molecule 21 Chromosome CM050998.1 = NC_072839.1 Primary Assembly 17804902 na HiC_scaffold_100 unplaced-scaffold na na JAPTFN010000100.1 = NW_026559799.1 Primary Assembly 36936 na HiC_scaffold_101 unplaced-scaffold na na JAPTFN010000101.1 = NW_026559800.1 Primary Assembly 36781 na HiC_scaffold_102 unplaced-scaffold na na JAPTFN010000102.1 = NW_026559801.1 Primary Assembly 36185 na HiC_scaffold_103 unplaced-scaffold na na JAPTFN010000103.1 = NW_026559802.1 Primary Assembly 35787 na HiC_scaffold_104 unplaced-scaffold na na JAPTFN010000104.1 = NW_026559803.1 Primary Assembly 35777 na HiC_scaffold_105 unplaced-scaffold na na JAPTFN010000105.1 = NW_026559804.1 Primary Assembly 35699 na HiC_scaffold_106 unplaced-scaffold na na JAPTFN010000106.1 = NW_026559805.1 Primary Assembly 35688 na HiC_scaffold_107 unplaced-scaffold na na JAPTFN010000107.1 = NW_026559806.1 Primary Assembly 35334 na HiC_scaffold_108 unplaced-scaffold na na JAPTFN010000108.1 = NW_026559807.1 Primary Assembly 34737 na HiC_scaffold_109 unplaced-scaffold na na JAPTFN010000109.1 = NW_026559808.1 Primary Assembly 34729 na HiC_scaffold_110 unplaced-scaffold na na JAPTFN010000110.1 = NW_026559809.1 Primary Assembly 34674 na HiC_scaffold_111 unplaced-scaffold na na JAPTFN010000111.1 = NW_026559810.1 Primary Assembly 34597 na HiC_scaffold_112 unplaced-scaffold na na JAPTFN010000112.1 = NW_026559811.1 Primary Assembly 34129 na HiC_scaffold_113 unplaced-scaffold na na JAPTFN010000113.1 = NW_026559812.1 Primary Assembly 34019 na HiC_scaffold_114 unplaced-scaffold na na JAPTFN010000114.1 = NW_026559813.1 Primary Assembly 33777 na HiC_scaffold_116 unplaced-scaffold na na JAPTFN010000116.1 = NW_026559814.1 Primary Assembly 33459 na HiC_scaffold_117 unplaced-scaffold na na JAPTFN010000117.1 = NW_026559815.1 Primary Assembly 33359 na HiC_scaffold_118 unplaced-scaffold na na JAPTFN010000118.1 = NW_026559816.1 Primary Assembly 33334 na HiC_scaffold_119 unplaced-scaffold na na JAPTFN010000119.1 = NW_026559817.1 Primary Assembly 33317 na HiC_scaffold_120 unplaced-scaffold na na JAPTFN010000120.1 = NW_026559818.1 Primary Assembly 33095 na HiC_scaffold_121 unplaced-scaffold na na JAPTFN010000121.1 = NW_026559819.1 Primary Assembly 33039 na HiC_scaffold_122 unplaced-scaffold na na JAPTFN010000122.1 = NW_026559820.1 Primary Assembly 32764 na HiC_scaffold_123 unplaced-scaffold na na JAPTFN010000123.1 = NW_026559821.1 Primary Assembly 32481 na HiC_scaffold_124 unplaced-scaffold na na JAPTFN010000124.1 = NW_026559822.1 Primary Assembly 32384 na HiC_scaffold_125 unplaced-scaffold na na JAPTFN010000125.1 = NW_026559823.1 Primary Assembly 31753 na HiC_scaffold_126 unplaced-scaffold na na JAPTFN010000126.1 = NW_026559824.1 Primary Assembly 31748 na HiC_scaffold_127 unplaced-scaffold na na JAPTFN010000127.1 = NW_026559825.1 Primary Assembly 31451 na HiC_scaffold_128 unplaced-scaffold na na JAPTFN010000128.1 = NW_026559826.1 Primary Assembly 31273 na HiC_scaffold_129 unplaced-scaffold na na JAPTFN010000129.1 = NW_026559827.1 Primary Assembly 31160 na HiC_scaffold_130 unplaced-scaffold na na JAPTFN010000130.1 = NW_026559828.1 Primary Assembly 30986 na HiC_scaffold_131 unplaced-scaffold na na JAPTFN010000131.1 = NW_026559829.1 Primary Assembly 30950 na HiC_scaffold_133 unplaced-scaffold na na JAPTFN010000133.1 = NW_026559830.1 Primary Assembly 30231 na HiC_scaffold_134 unplaced-scaffold na na JAPTFN010000134.1 = NW_026559831.1 Primary Assembly 30127 na HiC_scaffold_136 unplaced-scaffold na na JAPTFN010000136.1 = NW_026559832.1 Primary Assembly 29880 na HiC_scaffold_138 unplaced-scaffold na na JAPTFN010000138.1 = NW_026559833.1 Primary Assembly 29330 na HiC_scaffold_139 unplaced-scaffold na na JAPTFN010000139.1 = NW_026559834.1 Primary Assembly 28745 na HiC_scaffold_140 unplaced-scaffold na na JAPTFN010000140.1 = NW_026559835.1 Primary Assembly 28622 na HiC_scaffold_141 unplaced-scaffold na na JAPTFN010000141.1 = NW_026559836.1 Primary Assembly 28452 na HiC_scaffold_142 unplaced-scaffold na na JAPTFN010000142.1 = NW_026559837.1 Primary Assembly 28391 na HiC_scaffold_143 unplaced-scaffold na na JAPTFN010000143.1 = NW_026559838.1 Primary Assembly 28283 na HiC_scaffold_144 unplaced-scaffold na na JAPTFN010000144.1 = NW_026559839.1 Primary Assembly 28081 na HiC_scaffold_145 unplaced-scaffold na na JAPTFN010000145.1 = NW_026559840.1 Primary Assembly 27849 na HiC_scaffold_146 unplaced-scaffold na na JAPTFN010000146.1 = NW_026559841.1 Primary Assembly 27641 na HiC_scaffold_147 unplaced-scaffold na na JAPTFN010000147.1 = NW_026559842.1 Primary Assembly 27309 na HiC_scaffold_148 unplaced-scaffold na na JAPTFN010000148.1 = NW_026559843.1 Primary Assembly 27294 na HiC_scaffold_149 unplaced-scaffold na na JAPTFN010000149.1 = NW_026559844.1 Primary Assembly 26862 na HiC_scaffold_150 unplaced-scaffold na na JAPTFN010000150.1 = NW_026559845.1 Primary Assembly 26184 na HiC_scaffold_151 unplaced-scaffold na na JAPTFN010000151.1 = NW_026559846.1 Primary Assembly 24876 na HiC_scaffold_152 unplaced-scaffold na na JAPTFN010000152.1 = NW_026559847.1 Primary Assembly 24770 na HiC_scaffold_153 unplaced-scaffold na na JAPTFN010000153.1 = NW_026559848.1 Primary Assembly 24257 na HiC_scaffold_154 unplaced-scaffold na na JAPTFN010000154.1 = NW_026559849.1 Primary Assembly 23840 na HiC_scaffold_155 unplaced-scaffold na na JAPTFN010000155.1 = NW_026559850.1 Primary Assembly 22717 na HiC_scaffold_156 unplaced-scaffold na na JAPTFN010000156.1 = NW_026559851.1 Primary Assembly 22382 na HiC_scaffold_157 unplaced-scaffold na na JAPTFN010000157.1 = NW_026559852.1 Primary Assembly 21701 na HiC_scaffold_158 unplaced-scaffold na na JAPTFN010000158.1 = NW_026559853.1 Primary Assembly 21216 na HiC_scaffold_159 unplaced-scaffold na na JAPTFN010000159.1 = NW_026559854.1 Primary Assembly 21100 na HiC_scaffold_160 unplaced-scaffold na na JAPTFN010000160.1 = NW_026559855.1 Primary Assembly 20247 na HiC_scaffold_161 unplaced-scaffold na na JAPTFN010000161.1 = NW_026559856.1 Primary Assembly 19379 na HiC_scaffold_162 unplaced-scaffold na na JAPTFN010000162.1 = NW_026559857.1 Primary Assembly 17238 na HiC_scaffold_22 unplaced-scaffold na na JAPTFN010000022.1 = NW_026559858.1 Primary Assembly 758754 na HiC_scaffold_23 unplaced-scaffold na na JAPTFN010000023.1 = NW_026559859.1 Primary Assembly 441630 na HiC_scaffold_24 unplaced-scaffold na na JAPTFN010000024.1 = NW_026559860.1 Primary Assembly 365950 na HiC_scaffold_25 unplaced-scaffold na na JAPTFN010000025.1 = NW_026559861.1 Primary Assembly 301469 na HiC_scaffold_26 unplaced-scaffold na na JAPTFN010000026.1 = NW_026559862.1 Primary Assembly 238187 na HiC_scaffold_27 unplaced-scaffold na na JAPTFN010000027.1 = NW_026559863.1 Primary Assembly 180221 na HiC_scaffold_28 unplaced-scaffold na na JAPTFN010000028.1 = NW_026559864.1 Primary Assembly 175093 na HiC_scaffold_29 unplaced-scaffold na na JAPTFN010000029.1 = NW_026559865.1 Primary Assembly 166465 na HiC_scaffold_30 unplaced-scaffold na na JAPTFN010000030.1 = NW_026559866.1 Primary Assembly 164176 na HiC_scaffold_31 unplaced-scaffold na na JAPTFN010000031.1 = NW_026559867.1 Primary Assembly 160045 na HiC_scaffold_32 unplaced-scaffold na na JAPTFN010000032.1 = NW_026559868.1 Primary Assembly 157922 na HiC_scaffold_33 unplaced-scaffold na na JAPTFN010000033.1 = NW_026559869.1 Primary Assembly 141565 na HiC_scaffold_34 unplaced-scaffold na na JAPTFN010000034.1 = NW_026559870.1 Primary Assembly 128623 na HiC_scaffold_35 unplaced-scaffold na na JAPTFN010000035.1 = NW_026559871.1 Primary Assembly 124042 na HiC_scaffold_36 unplaced-scaffold na na JAPTFN010000036.1 = NW_026559872.1 Primary Assembly 117750 na HiC_scaffold_37 unplaced-scaffold na na JAPTFN010000037.1 = NW_026559873.1 Primary Assembly 115252 na HiC_scaffold_38 unplaced-scaffold na na JAPTFN010000038.1 = NW_026559874.1 Primary Assembly 113332 na HiC_scaffold_39 unplaced-scaffold na na JAPTFN010000039.1 = NW_026559875.1 Primary Assembly 112872 na HiC_scaffold_40 unplaced-scaffold na na JAPTFN010000040.1 = NW_026559876.1 Primary Assembly 108207 na HiC_scaffold_41 unplaced-scaffold na na JAPTFN010000041.1 = NW_026559877.1 Primary Assembly 99663 na HiC_scaffold_42 unplaced-scaffold na na JAPTFN010000042.1 = NW_026559878.1 Primary Assembly 98362 na HiC_scaffold_43 unplaced-scaffold na na JAPTFN010000043.1 = NW_026559879.1 Primary Assembly 96442 na HiC_scaffold_44 unplaced-scaffold na na JAPTFN010000044.1 = NW_026559880.1 Primary Assembly 93293 na HiC_scaffold_45 unplaced-scaffold na na JAPTFN010000045.1 = NW_026559881.1 Primary Assembly 92828 na HiC_scaffold_46 unplaced-scaffold na na JAPTFN010000046.1 = NW_026559882.1 Primary Assembly 90971 na HiC_scaffold_47 unplaced-scaffold na na JAPTFN010000047.1 = NW_026559883.1 Primary Assembly 88875 na HiC_scaffold_48 unplaced-scaffold na na JAPTFN010000048.1 = NW_026559884.1 Primary Assembly 86475 na HiC_scaffold_49 unplaced-scaffold na na JAPTFN010000049.1 = NW_026559885.1 Primary Assembly 85329 na HiC_scaffold_50 unplaced-scaffold na na JAPTFN010000050.1 = NW_026559886.1 Primary Assembly 85057 na HiC_scaffold_51 unplaced-scaffold na na JAPTFN010000051.1 = NW_026559887.1 Primary Assembly 84849 na HiC_scaffold_52 unplaced-scaffold na na JAPTFN010000052.1 = NW_026559888.1 Primary Assembly 78594 na HiC_scaffold_53 unplaced-scaffold na na JAPTFN010000053.1 = NW_026559889.1 Primary Assembly 74981 na HiC_scaffold_54 unplaced-scaffold na na JAPTFN010000054.1 = NW_026559890.1 Primary Assembly 69457 na HiC_scaffold_55 unplaced-scaffold na na JAPTFN010000055.1 = NW_026559891.1 Primary Assembly 69099 na HiC_scaffold_56 unplaced-scaffold na na JAPTFN010000056.1 = NW_026559892.1 Primary Assembly 66382 na HiC_scaffold_57 unplaced-scaffold na na JAPTFN010000057.1 = NW_026559893.1 Primary Assembly 65812 na HiC_scaffold_58 unplaced-scaffold na na JAPTFN010000058.1 = NW_026559894.1 Primary Assembly 62641 na HiC_scaffold_59 unplaced-scaffold na na JAPTFN010000059.1 = NW_026559895.1 Primary Assembly 61818 na HiC_scaffold_60 unplaced-scaffold na na JAPTFN010000060.1 = NW_026559896.1 Primary Assembly 59043 na HiC_scaffold_61 unplaced-scaffold na na JAPTFN010000061.1 = NW_026559897.1 Primary Assembly 58206 na HiC_scaffold_62 unplaced-scaffold na na JAPTFN010000062.1 = NW_026559898.1 Primary Assembly 57616 na HiC_scaffold_63 unplaced-scaffold na na JAPTFN010000063.1 = NW_026559899.1 Primary Assembly 57567 na HiC_scaffold_64 unplaced-scaffold na na JAPTFN010000064.1 = NW_026559900.1 Primary Assembly 57350 na HiC_scaffold_65 unplaced-scaffold na na JAPTFN010000065.1 = NW_026559901.1 Primary Assembly 56893 na HiC_scaffold_66 unplaced-scaffold na na JAPTFN010000066.1 = NW_026559902.1 Primary Assembly 56156 na HiC_scaffold_67 unplaced-scaffold na na JAPTFN010000067.1 = NW_026559903.1 Primary Assembly 55684 na HiC_scaffold_68 unplaced-scaffold na na JAPTFN010000068.1 = NW_026559904.1 Primary Assembly 55491 na HiC_scaffold_69 unplaced-scaffold na na JAPTFN010000069.1 = NW_026559905.1 Primary Assembly 55056 na HiC_scaffold_70 unplaced-scaffold na na JAPTFN010000070.1 = NW_026559906.1 Primary Assembly 54790 na HiC_scaffold_71 unplaced-scaffold na na JAPTFN010000071.1 = NW_026559907.1 Primary Assembly 53947 na HiC_scaffold_72 unplaced-scaffold na na JAPTFN010000072.1 = NW_026559908.1 Primary Assembly 52215 na HiC_scaffold_73 unplaced-scaffold na na JAPTFN010000073.1 = NW_026559909.1 Primary Assembly 52144 na HiC_scaffold_74 unplaced-scaffold na na JAPTFN010000074.1 = NW_026559910.1 Primary Assembly 51903 na HiC_scaffold_75 unplaced-scaffold na na JAPTFN010000075.1 = NW_026559911.1 Primary Assembly 50722 na HiC_scaffold_76 unplaced-scaffold na na JAPTFN010000076.1 = NW_026559912.1 Primary Assembly 49839 na HiC_scaffold_77 unplaced-scaffold na na JAPTFN010000077.1 = NW_026559913.1 Primary Assembly 49216 na HiC_scaffold_78 unplaced-scaffold na na JAPTFN010000078.1 = NW_026559914.1 Primary Assembly 49210 na HiC_scaffold_79 unplaced-scaffold na na JAPTFN010000079.1 = NW_026559915.1 Primary Assembly 48934 na HiC_scaffold_80 unplaced-scaffold na na JAPTFN010000080.1 = NW_026559916.1 Primary Assembly 47772 na HiC_scaffold_81 unplaced-scaffold na na JAPTFN010000081.1 = NW_026559917.1 Primary Assembly 45511 na HiC_scaffold_82 unplaced-scaffold na na JAPTFN010000082.1 = NW_026559918.1 Primary Assembly 45011 na HiC_scaffold_83 unplaced-scaffold na na JAPTFN010000083.1 = NW_026559919.1 Primary Assembly 44552 na HiC_scaffold_84 unplaced-scaffold na na JAPTFN010000084.1 = NW_026559920.1 Primary Assembly 44397 na HiC_scaffold_85 unplaced-scaffold na na JAPTFN010000085.1 = NW_026559921.1 Primary Assembly 43661 na HiC_scaffold_86 unplaced-scaffold na na JAPTFN010000086.1 = NW_026559922.1 Primary Assembly 43419 na HiC_scaffold_87 unplaced-scaffold na na JAPTFN010000087.1 = NW_026559923.1 Primary Assembly 42661 na HiC_scaffold_88 unplaced-scaffold na na JAPTFN010000088.1 = NW_026559924.1 Primary Assembly 41669 na HiC_scaffold_89 unplaced-scaffold na na JAPTFN010000089.1 = NW_026559925.1 Primary Assembly 41054 na HiC_scaffold_90 unplaced-scaffold na na JAPTFN010000090.1 = NW_026559926.1 Primary Assembly 40984 na HiC_scaffold_91 unplaced-scaffold na na JAPTFN010000091.1 = NW_026559927.1 Primary Assembly 40952 na HiC_scaffold_92 unplaced-scaffold na na JAPTFN010000092.1 = NW_026559928.1 Primary Assembly 40905 na HiC_scaffold_93 unplaced-scaffold na na JAPTFN010000093.1 = NW_026559929.1 Primary Assembly 40880 na HiC_scaffold_94 unplaced-scaffold na na JAPTFN010000094.1 = NW_026559930.1 Primary Assembly 40515 na HiC_scaffold_95 unplaced-scaffold na na JAPTFN010000095.1 = NW_026559931.1 Primary Assembly 39584 na HiC_scaffold_96 unplaced-scaffold na na JAPTFN010000096.1 = NW_026559932.1 Primary Assembly 39041 na HiC_scaffold_97 unplaced-scaffold na na JAPTFN010000097.1 = NW_026559933.1 Primary Assembly 37950 na HiC_scaffold_98 unplaced-scaffold na na JAPTFN010000098.1 = NW_026559934.1 Primary Assembly 37575 na