# Assembly name: rMalTer1.hap1 # Organism name: Malaclemys terrapin pileata (diamondback terrapin) # Isolate: rMalTer1 # Sex: male # Taxid: 2991368 # BioSample: SAMN31394215 # BioProject: PRJNA895896 # Submitter: Vertebrate Genomes Project # Date: 2023-01-18 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAQIHI01 # Assembly method: Hifiasm + Hi-C phasing v. 0.16.1 + galaxy2; Bionano Solve v. 3.7; salsa v. 2.3 + galaxy2; gEVAL manual curtion v. 2022-07-08 # Expected final version: no # Genome coverage: 30.26x # Sequencing technology: PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_027887155.1 # RefSeq assembly accession: GCF_027887155.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_027887195.1 GCF_027887195.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM051158.1 = NC_071505.1 Primary Assembly 356035893 na SUPER_2 assembled-molecule 2 Chromosome CM051159.1 = NC_071506.1 Primary Assembly 287939129 na SUPER_3 assembled-molecule 3 Chromosome CM051160.1 = NC_071507.1 Primary Assembly 209484700 na SUPER_4 assembled-molecule 4 Chromosome CM051161.1 = NC_071508.1 Primary Assembly 154637676 na SUPER_5 assembled-molecule 5 Chromosome CM051162.1 = NC_071509.1 Primary Assembly 144565223 na SUPER_6 assembled-molecule 6 Chromosome CM051163.1 = NC_071510.1 Primary Assembly 134400859 na SUPER_7 assembled-molecule 7 Chromosome CM051164.1 = NC_071511.1 Primary Assembly 128564339 na SUPER_8 assembled-molecule 8 Chromosome CM051165.1 = NC_071512.1 Primary Assembly 110734712 na SUPER_9 assembled-molecule 9 Chromosome CM051166.1 = NC_071513.1 Primary Assembly 106342416 na SUPER_10 assembled-molecule 10 Chromosome CM051167.1 = NC_071514.1 Primary Assembly 87964153 na SUPER_11 assembled-molecule 11 Chromosome CM051168.1 = NC_071515.1 Primary Assembly 80279977 na SUPER_12 assembled-molecule 12 Chromosome CM051169.1 = NC_071516.1 Primary Assembly 50359489 na SUPER_13 assembled-molecule 13 Chromosome CM051170.1 = NC_071517.1 Primary Assembly 46690620 na SUPER_14 assembled-molecule 14 Chromosome CM051171.1 = NC_071518.1 Primary Assembly 44538819 na SUPER_15 assembled-molecule 15 Chromosome CM051172.1 = NC_071519.1 Primary Assembly 35236932 na SUPER_16 assembled-molecule 16 Chromosome CM051173.1 = NC_071520.1 Primary Assembly 33587576 na SUPER_17 assembled-molecule 17 Chromosome CM051174.1 = NC_071521.1 Primary Assembly 27359296 na SUPER_18 assembled-molecule 18 Chromosome CM051175.1 = NC_071522.1 Primary Assembly 26203773 na SUPER_19 assembled-molecule 19 Chromosome CM051176.1 = NC_071523.1 Primary Assembly 23482147 na SUPER_20 assembled-molecule 20 Chromosome CM051177.1 = NC_071524.1 Primary Assembly 19375135 na SUPER_21 assembled-molecule 21 Chromosome CM051178.1 = NC_071525.1 Primary Assembly 21628354 na SUPER_22 assembled-molecule 22 Chromosome CM051179.1 = NC_071526.1 Primary Assembly 20494329 na SUPER_23 assembled-molecule 23 Chromosome CM051180.1 = NC_071527.1 Primary Assembly 20003749 na SUPER_24 assembled-molecule 24 Chromosome CM051181.1 = NC_071528.1 Primary Assembly 17851537 na SUPER_25 assembled-molecule 25 Chromosome CM051182.1 = NC_071529.1 Primary Assembly 17025087 na SUPER_7_unloc_1 unlocalized-scaffold 7 Chromosome JAQIHI010000008.1 = NW_026530187.1 Primary Assembly 86057 na SUPER_20_unloc_1 unlocalized-scaffold 20 Chromosome JAQIHI010000022.1 = NW_026530188.1 Primary Assembly 1797182 na SUPER_20_unloc_2 unlocalized-scaffold 20 Chromosome JAQIHI010000023.1 = NW_026530189.1 Primary Assembly 630839 na SUPER_20_unloc_3 unlocalized-scaffold 20 Chromosome JAQIHI010000024.1 = NW_026530190.1 Primary Assembly 208376 na SUPER_20_unloc_4 unlocalized-scaffold 20 Chromosome JAQIHI010000025.1 = NW_026530191.1 Primary Assembly 158874 na SUPER_20_unloc_5 unlocalized-scaffold 20 Chromosome JAQIHI010000026.1 = NW_026530192.1 Primary Assembly 148331 na SUPER_20_unloc_6 unlocalized-scaffold 20 Chromosome JAQIHI010000027.1 = NW_026530193.1 Primary Assembly 89051 na SUPER_20_unloc_7 unlocalized-scaffold 20 Chromosome JAQIHI010000028.1 = NW_026530194.1 Primary Assembly 20642 na H_1 unplaced-scaffold na na JAQIHI010000076.1 = NW_026530195.1 Primary Assembly 1056919 na scaffold_101 unplaced-scaffold na na JAQIHI010000051.1 = NW_026530196.1 Primary Assembly 36882 na scaffold_103 unplaced-scaffold na na JAQIHI010000052.1 = NW_026530197.1 Primary Assembly 35276 na scaffold_105 unplaced-scaffold na na JAQIHI010000053.1 = NW_026530198.1 Primary Assembly 34289 na scaffold_107 unplaced-scaffold na na JAQIHI010000054.1 = NW_026530199.1 Primary Assembly 33890 na scaffold_109 unplaced-scaffold na na JAQIHI010000055.1 = NW_026530200.1 Primary Assembly 32765 na scaffold_111 unplaced-scaffold na na JAQIHI010000056.1 = NW_026530201.1 Primary Assembly 32484 na scaffold_113 unplaced-scaffold na na JAQIHI010000057.1 = NW_026530202.1 Primary Assembly 30762 na scaffold_115 unplaced-scaffold na na JAQIHI010000058.1 = NW_026530203.1 Primary Assembly 29971 na scaffold_116 unplaced-scaffold na na JAQIHI010000034.1 = NW_026530204.1 Primary Assembly 29029 na scaffold_117 unplaced-scaffold na na JAQIHI010000059.1 = NW_026530205.1 Primary Assembly 27571 na scaffold_118 unplaced-scaffold na na JAQIHI010000060.1 = NW_026530206.1 Primary Assembly 27032 na scaffold_119 unplaced-scaffold na na JAQIHI010000049.1 = NW_026530207.1 Primary Assembly 26289 na scaffold_120 unplaced-scaffold na na JAQIHI010000061.1 = NW_026530208.1 Primary Assembly 25255 na scaffold_122 unplaced-scaffold na na JAQIHI010000062.1 = NW_026530209.1 Primary Assembly 24218 na scaffold_123 unplaced-scaffold na na JAQIHI010000063.1 = NW_026530210.1 Primary Assembly 23794 na scaffold_125 unplaced-scaffold na na JAQIHI010000064.1 = NW_026530211.1 Primary Assembly 23288 na scaffold_126 unplaced-scaffold na na JAQIHI010000065.1 = NW_026530212.1 Primary Assembly 22174 na scaffold_128 unplaced-scaffold na na JAQIHI010000066.1 = NW_026530213.1 Primary Assembly 21603 na scaffold_129 unplaced-scaffold na na JAQIHI010000067.1 = NW_026530214.1 Primary Assembly 21023 na scaffold_131 unplaced-scaffold na na JAQIHI010000068.1 = NW_026530215.1 Primary Assembly 19674 na scaffold_132 unplaced-scaffold na na JAQIHI010000069.1 = NW_026530216.1 Primary Assembly 17330 na scaffold_133 unplaced-scaffold na na JAQIHI010000070.1 = NW_026530217.1 Primary Assembly 15237 na scaffold_134 unplaced-scaffold na na JAQIHI010000050.1 = NW_026530218.1 Primary Assembly 10936 na scaffold_58 unplaced-scaffold na na JAQIHI010000035.1 = NW_026530219.1 Primary Assembly 241397 na scaffold_62 unplaced-scaffold na na JAQIHI010000036.1 = NW_026530220.1 Primary Assembly 163259 na scaffold_66 unplaced-scaffold na na JAQIHI010000037.1 = NW_026530221.1 Primary Assembly 120671 na scaffold_68 unplaced-scaffold na na JAQIHI010000043.1 = NW_026530222.1 Primary Assembly 111644 na scaffold_71 unplaced-scaffold na na JAQIHI010000038.1 = NW_026530223.1 Primary Assembly 106326 na scaffold_73 unplaced-scaffold na na JAQIHI010000039.1 = NW_026530224.1 Primary Assembly 93510 na scaffold_74 unplaced-scaffold na na JAQIHI010000040.1 = NW_026530225.1 Primary Assembly 92201 na scaffold_75 unplaced-scaffold na na JAQIHI010000041.1 = NW_026530226.1 Primary Assembly 91254 na scaffold_78 unplaced-scaffold na na JAQIHI010000044.1 = NW_026530227.1 Primary Assembly 83519 na scaffold_82 unplaced-scaffold na na JAQIHI010000045.1 = NW_026530228.1 Primary Assembly 67012 na scaffold_83 unplaced-scaffold na na JAQIHI010000042.1 = NW_026530229.1 Primary Assembly 66521 na scaffold_84 unplaced-scaffold na na JAQIHI010000046.1 = NW_026530230.1 Primary Assembly 64014 na scaffold_86 unplaced-scaffold na na JAQIHI010000071.1 = NW_026530231.1 Primary Assembly 59397 na scaffold_87 unplaced-scaffold na na JAQIHI010000047.1 = NW_026530232.1 Primary Assembly 52625 na scaffold_88 unplaced-scaffold na na JAQIHI010000048.1 = NW_026530233.1 Primary Assembly 49548 na scaffold_90 unplaced-scaffold na na JAQIHI010000072.1 = NW_026530234.1 Primary Assembly 49224 na scaffold_94 unplaced-scaffold na na JAQIHI010000073.1 = NW_026530235.1 Primary Assembly 47258 na scaffold_96 unplaced-scaffold na na JAQIHI010000074.1 = NW_026530236.1 Primary Assembly 41057 na scaffold_99 unplaced-scaffold na na JAQIHI010000075.1 = NW_026530237.1 Primary Assembly 37980 na