# Assembly name: idAnaLude1.1 # Organism name: Anastrepha ludens (Mexican fruit fly) # Isolate: Willacy # Sex: male # Taxid: 28586 # BioSample: SAMN25644084 # BioProject: PRJNA803324 # Submitter: United States Department of Agriculture # Date: 2023-02-06 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAKYJY01 # Assembly method: HiFiASM v. 0.16.1-r375 # Expected final version: yes # Genome coverage: 44x # Sequencing technology: PacBio Sequel # RefSeq category: Representative Genome # GenBank assembly accession: GCA_028408465.1 # RefSeq assembly accession: GCF_028408465.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_028414665.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_028408475.1 GCF_028408475.1 Primary Assembly ## GCA_028408485.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Chromosome2 assembled-molecule 2 Chromosome CM051846.1 = NC_071498.1 Primary Assembly 185090897 na Chromosome3 assembled-molecule 3 Chromosome CM051847.1 = NC_071499.1 Primary Assembly 133334115 na Chromosome4 assembled-molecule 4 Chromosome CM051848.1 = NC_071500.1 Primary Assembly 131385309 na Chromosome5 assembled-molecule 5 Chromosome CM051849.1 = NC_071501.1 Primary Assembly 128169930 na Chromosome6 assembled-molecule 6 Chromosome CM051850.1 = NC_071502.1 Primary Assembly 127816056 na X assembled-molecule X Chromosome CM051851.1 = NC_071503.1 Primary Assembly 99992179 na Y assembled-molecule Y Chromosome CM051852.1 = NC_071504.1 Primary Assembly 6146282 na ptg000018l unplaced-scaffold na na JAKYJY010000008.1 = NW_026530029.1 Primary Assembly 1013752 na ptg000024l unplaced-scaffold na na JAKYJY010000009.1 = NW_026530030.1 Primary Assembly 712846 na ptg000041l unplaced-scaffold na na JAKYJY010000010.1 = NW_026530031.1 Primary Assembly 605620 na ptg000046l unplaced-scaffold na na JAKYJY010000011.1 = NW_026530032.1 Primary Assembly 282862 na ptg000022l unplaced-scaffold na na JAKYJY010000012.1 = NW_026530033.1 Primary Assembly 275857 na ptg000053l unplaced-scaffold na na JAKYJY010000013.1 = NW_026530034.1 Primary Assembly 241854 na ptg000027l unplaced-scaffold na na JAKYJY010000014.1 = NW_026530035.1 Primary Assembly 226764 na ptg000052l unplaced-scaffold na na JAKYJY010000015.1 = NW_026530036.1 Primary Assembly 224207 na ptg000082l unplaced-scaffold na na JAKYJY010000016.1 = NW_026530037.1 Primary Assembly 205911 na ptg000038l unplaced-scaffold na na JAKYJY010000017.1 = NW_026530038.1 Primary Assembly 195396 na ptg000055l unplaced-scaffold na na JAKYJY010000018.1 = NW_026530039.1 Primary Assembly 190678 na ptg000045l unplaced-scaffold na na JAKYJY010000019.1 = NW_026530040.1 Primary Assembly 186804 na ptg000075l unplaced-scaffold na na JAKYJY010000020.1 = NW_026530041.1 Primary Assembly 161803 na ptg000031l unplaced-scaffold na na JAKYJY010000021.1 = NW_026530042.1 Primary Assembly 152638 na ptg000062l unplaced-scaffold na na JAKYJY010000022.1 = NW_026530043.1 Primary Assembly 150404 na ptg000057l unplaced-scaffold na na JAKYJY010000023.1 = NW_026530044.1 Primary Assembly 147810 na ptg000063l unplaced-scaffold na na JAKYJY010000024.1 = NW_026530045.1 Primary Assembly 130886 na Chromosome7 unplaced-scaffold na na JAKYJY010000025.1 = NW_026530046.1 Primary Assembly 125627 na ptg000044l unplaced-scaffold na na JAKYJY010000026.1 = NW_026530047.1 Primary Assembly 116884 na ptg000078l unplaced-scaffold na na JAKYJY010000027.1 = NW_026530048.1 Primary Assembly 114724 na ptg000039c unplaced-scaffold na na JAKYJY010000028.1 = NW_026530049.1 Primary Assembly 109807 na ptg000051l unplaced-scaffold na na JAKYJY010000029.1 = NW_026530050.1 Primary Assembly 101290 na ptg000061l unplaced-scaffold na na JAKYJY010000030.1 = NW_026530051.1 Primary Assembly 95466 na ptg000105l unplaced-scaffold na na JAKYJY010000031.1 = NW_026530052.1 Primary Assembly 95358 na ptg000058l unplaced-scaffold na na JAKYJY010000032.1 = NW_026530053.1 Primary Assembly 91805 na ptg000068l unplaced-scaffold na na JAKYJY010000033.1 = NW_026530054.1 Primary Assembly 86605 na ptg000089l unplaced-scaffold na na JAKYJY010000034.1 = NW_026530055.1 Primary Assembly 79909 na ptg000042l unplaced-scaffold na na JAKYJY010000035.1 = NW_026530056.1 Primary Assembly 78420 na ptg000073l unplaced-scaffold na na JAKYJY010000036.1 = NW_026530057.1 Primary Assembly 77341 na ptg000040l unplaced-scaffold na na JAKYJY010000037.1 = NW_026530058.1 Primary Assembly 76775 na ptg000033l unplaced-scaffold na na JAKYJY010000038.1 = NW_026530059.1 Primary Assembly 67541 na ptg000072l unplaced-scaffold na na JAKYJY010000039.1 = NW_026530060.1 Primary Assembly 66813 na ptg000081c unplaced-scaffold na na JAKYJY010000040.1 = NW_026530061.1 Primary Assembly 65694 na ptg000103l unplaced-scaffold na na JAKYJY010000041.1 = NW_026530062.1 Primary Assembly 62439 na ptg000059l unplaced-scaffold na na JAKYJY010000042.1 = NW_026530063.1 Primary Assembly 51059 na ptg000047l unplaced-scaffold na na JAKYJY010000043.1 = NW_026530064.1 Primary Assembly 49019 na ptg000030l unplaced-scaffold na na JAKYJY010000044.1 = NW_026530065.1 Primary Assembly 47811 na ptg000083l unplaced-scaffold na na JAKYJY010000045.1 = NW_026530066.1 Primary Assembly 45973 na ptg000090l unplaced-scaffold na na JAKYJY010000046.1 = NW_026530067.1 Primary Assembly 41677 na ptg000092l unplaced-scaffold na na JAKYJY010000047.1 = NW_026530068.1 Primary Assembly 40675 na ptg000066l unplaced-scaffold na na JAKYJY010000048.1 = NW_026530069.1 Primary Assembly 40412 na ptg000060l unplaced-scaffold na na JAKYJY010000049.1 = NW_026530070.1 Primary Assembly 40019 na ptg000101l unplaced-scaffold na na JAKYJY010000050.1 = NW_026530071.1 Primary Assembly 38336 na ptg000135l unplaced-scaffold na na JAKYJY010000051.1 = NW_026530072.1 Primary Assembly 35505 na ptg000056l unplaced-scaffold na na JAKYJY010000052.1 = NW_026530073.1 Primary Assembly 34874 na ptg000157l unplaced-scaffold na na JAKYJY010000053.1 = NW_026530074.1 Primary Assembly 34675 na ptg000091l unplaced-scaffold na na JAKYJY010000054.1 = NW_026530075.1 Primary Assembly 33040 na ptg000054l unplaced-scaffold na na JAKYJY010000055.1 = NW_026530076.1 Primary Assembly 32596 na ptg000145l unplaced-scaffold na na JAKYJY010000056.1 = NW_026530077.1 Primary Assembly 31886 na ptg000126l unplaced-scaffold na na JAKYJY010000057.1 = NW_026530078.1 Primary Assembly 31423 na ptg000074l unplaced-scaffold na na JAKYJY010000058.1 = NW_026530079.1 Primary Assembly 31160 na ptg000115l unplaced-scaffold na na JAKYJY010000059.1 = NW_026530080.1 Primary Assembly 28537 na ptg000120l unplaced-scaffold na na JAKYJY010000060.1 = NW_026530081.1 Primary Assembly 28111 na ptg000167l unplaced-scaffold na na JAKYJY010000061.1 = NW_026530082.1 Primary Assembly 27678 na ptg000049c unplaced-scaffold na na JAKYJY010000062.1 = NW_026530083.1 Primary Assembly 27130 na ptg000158l unplaced-scaffold na na JAKYJY010000063.1 = NW_026530084.1 Primary Assembly 26967 na ptg000079l unplaced-scaffold na na JAKYJY010000064.1 = NW_026530085.1 Primary Assembly 26962 na ptg000065l unplaced-scaffold na na JAKYJY010000065.1 = NW_026530086.1 Primary Assembly 26506 na ptg000147l unplaced-scaffold na na JAKYJY010000066.1 = NW_026530087.1 Primary Assembly 25233 na ptg000087l unplaced-scaffold na na JAKYJY010000067.1 = NW_026530088.1 Primary Assembly 25134 na ptg000064l unplaced-scaffold na na JAKYJY010000068.1 = NW_026530089.1 Primary Assembly 24814 na ptg000172l unplaced-scaffold na na JAKYJY010000069.1 = NW_026530090.1 Primary Assembly 24735 na ptg000109c unplaced-scaffold na na JAKYJY010000070.1 = NW_026530091.1 Primary Assembly 24568 na ptg000108l unplaced-scaffold na na JAKYJY010000071.1 = NW_026530092.1 Primary Assembly 24492 na ptg000130l unplaced-scaffold na na JAKYJY010000072.1 = NW_026530093.1 Primary Assembly 24227 na ptg000084l unplaced-scaffold na na JAKYJY010000073.1 = NW_026530094.1 Primary Assembly 24141 na ptg000117l unplaced-scaffold na na JAKYJY010000074.1 = NW_026530095.1 Primary Assembly 23903 na ptg000116l unplaced-scaffold na na JAKYJY010000075.1 = NW_026530096.1 Primary Assembly 23556 na ptg000152l unplaced-scaffold na na JAKYJY010000076.1 = NW_026530097.1 Primary Assembly 23359 na ptg000156l unplaced-scaffold na na JAKYJY010000077.1 = NW_026530098.1 Primary Assembly 23124 na ptg000114l unplaced-scaffold na na JAKYJY010000078.1 = NW_026530099.1 Primary Assembly 22792 na ptg000123l unplaced-scaffold na na JAKYJY010000079.1 = NW_026530100.1 Primary Assembly 22694 na ptg000144l unplaced-scaffold na na JAKYJY010000080.1 = NW_026530101.1 Primary Assembly 22599 na ptg000129l unplaced-scaffold na na JAKYJY010000081.1 = NW_026530102.1 Primary Assembly 22274 na ptg000069l unplaced-scaffold na na JAKYJY010000082.1 = NW_026530103.1 Primary Assembly 22205 na ptg000107l unplaced-scaffold na na JAKYJY010000083.1 = NW_026530104.1 Primary Assembly 22145 na ptg000104l unplaced-scaffold na na JAKYJY010000084.1 = NW_026530105.1 Primary Assembly 22112 na ptg000169l unplaced-scaffold na na JAKYJY010000085.1 = NW_026530106.1 Primary Assembly 22077 na ptg000113l unplaced-scaffold na na JAKYJY010000086.1 = NW_026530107.1 Primary Assembly 21716 na ptg000139l unplaced-scaffold na na JAKYJY010000087.1 = NW_026530108.1 Primary Assembly 21291 na ptg000124l unplaced-scaffold na na JAKYJY010000088.1 = NW_026530109.1 Primary Assembly 20625 na ptg000159l unplaced-scaffold na na JAKYJY010000089.1 = NW_026530110.1 Primary Assembly 19838 na ptg000160l unplaced-scaffold na na JAKYJY010000090.1 = NW_026530111.1 Primary Assembly 19251 na ptg000094l unplaced-scaffold na na JAKYJY010000091.1 = NW_026530112.1 Primary Assembly 19244 na ptg000173l unplaced-scaffold na na JAKYJY010000092.1 = NW_026530113.1 Primary Assembly 19092 na ptg000119l unplaced-scaffold na na JAKYJY010000093.1 = NW_026530114.1 Primary Assembly 18867 na ptg000122l unplaced-scaffold na na JAKYJY010000094.1 = NW_026530115.1 Primary Assembly 18843 na ptg000178l unplaced-scaffold na na JAKYJY010000095.1 = NW_026530116.1 Primary Assembly 18668 na ptg000085l unplaced-scaffold na na JAKYJY010000096.1 = NW_026530117.1 Primary Assembly 18534 na ptg000151l unplaced-scaffold na na JAKYJY010000097.1 = NW_026530118.1 Primary Assembly 18515 na ptg000179l unplaced-scaffold na na JAKYJY010000098.1 = NW_026530119.1 Primary Assembly 18339 na ptg000146l unplaced-scaffold na na JAKYJY010000099.1 = NW_026530120.1 Primary Assembly 18307 na ptg000141l unplaced-scaffold na na JAKYJY010000100.1 = NW_026530121.1 Primary Assembly 18170 na ptg000153l unplaced-scaffold na na JAKYJY010000101.1 = NW_026530122.1 Primary Assembly 18063 na ptg000175l unplaced-scaffold na na JAKYJY010000102.1 = NW_026530123.1 Primary Assembly 17967 na ptg000164l unplaced-scaffold na na JAKYJY010000103.1 = NW_026530124.1 Primary Assembly 17922 na ptg000110l unplaced-scaffold na na JAKYJY010000104.1 = NW_026530125.1 Primary Assembly 17739 na ptg000154l unplaced-scaffold na na JAKYJY010000105.1 = NW_026530126.1 Primary Assembly 17537 na ptg000106l unplaced-scaffold na na JAKYJY010000106.1 = NW_026530127.1 Primary Assembly 17415 na ptg000140l unplaced-scaffold na na JAKYJY010000107.1 = NW_026530128.1 Primary Assembly 17120 na ptg000096l unplaced-scaffold na na JAKYJY010000108.1 = NW_026530129.1 Primary Assembly 16884 na ptg000170l unplaced-scaffold na na JAKYJY010000109.1 = NW_026530130.1 Primary Assembly 16781 na ptg000176l unplaced-scaffold na na JAKYJY010000110.1 = NW_026530131.1 Primary Assembly 16697 na ptg000163l unplaced-scaffold na na JAKYJY010000111.1 = NW_026530132.1 Primary Assembly 16496 na ptg000111l unplaced-scaffold na na JAKYJY010000112.1 = NW_026530133.1 Primary Assembly 16476 na ptg000150l unplaced-scaffold na na JAKYJY010000113.1 = NW_026530134.1 Primary Assembly 16462 na ptg000070c unplaced-scaffold na na JAKYJY010000114.1 = NW_026530135.1 Primary Assembly 16439 na ptg000174l unplaced-scaffold na na JAKYJY010000115.1 = NW_026530136.1 Primary Assembly 16409 na ptg000127l unplaced-scaffold na na JAKYJY010000116.1 = NW_026530137.1 Primary Assembly 15801 na ptg000165l unplaced-scaffold na na JAKYJY010000117.1 = NW_026530138.1 Primary Assembly 15799 na ptg000182l unplaced-scaffold na na JAKYJY010000118.1 = NW_026530139.1 Primary Assembly 15629 na ptg000177l unplaced-scaffold na na JAKYJY010000119.1 = NW_026530140.1 Primary Assembly 15623 na ptg000134l unplaced-scaffold na na JAKYJY010000120.1 = NW_026530141.1 Primary Assembly 15488 na ptg000148l unplaced-scaffold na na JAKYJY010000121.1 = NW_026530142.1 Primary Assembly 15384 na ptg000132l unplaced-scaffold na na JAKYJY010000122.1 = NW_026530143.1 Primary Assembly 15083 na ptg000155l unplaced-scaffold na na JAKYJY010000123.1 = NW_026530144.1 Primary Assembly 14915 na ptg000181l unplaced-scaffold na na JAKYJY010000124.1 = NW_026530145.1 Primary Assembly 14912 na ptg000118l unplaced-scaffold na na JAKYJY010000125.1 = NW_026530146.1 Primary Assembly 14818 na ptg000076c unplaced-scaffold na na JAKYJY010000126.1 = NW_026530147.1 Primary Assembly 14740 na ptg000149l unplaced-scaffold na na JAKYJY010000127.1 = NW_026530148.1 Primary Assembly 14518 na ptg000121l unplaced-scaffold na na JAKYJY010000128.1 = NW_026530149.1 Primary Assembly 14460 na ptg000166l unplaced-scaffold na na JAKYJY010000129.1 = NW_026530150.1 Primary Assembly 14456 na ptg000162l unplaced-scaffold na na JAKYJY010000130.1 = NW_026530151.1 Primary Assembly 14289 na ptg000168l unplaced-scaffold na na JAKYJY010000131.1 = NW_026530152.1 Primary Assembly 14234 na ptg000171l unplaced-scaffold na na JAKYJY010000132.1 = NW_026530153.1 Primary Assembly 13177 na ptg000183l unplaced-scaffold na na JAKYJY010000133.1 = NW_026530154.1 Primary Assembly 13128 na ptg000097l unplaced-scaffold na na JAKYJY010000134.1 = NW_026530155.1 Primary Assembly 12289 na ptg000161l unplaced-scaffold na na JAKYJY010000135.1 = NW_026530156.1 Primary Assembly 12268 na ptg000086l unplaced-scaffold na na JAKYJY010000136.1 = NW_026530157.1 Primary Assembly 11721 na ptg000180l unplaced-scaffold na na JAKYJY010000137.1 = NW_026530158.1 Primary Assembly 11564 na ptg000032l unplaced-scaffold na na JAKYJY010000138.1 = NW_026530159.1 Primary Assembly 10954 na ptg000043l unplaced-scaffold na na JAKYJY010000139.1 = NW_026530160.1 Primary Assembly 10358 na ptg000050l unplaced-scaffold na na JAKYJY010000140.1 = NW_026530161.1 Primary Assembly 9299 na Mitochondrion assembled-molecule MT Mitochondrion CM051870.1 <> na non-nuclear 16954 na