track assembly
longLabel Assembly
shortLabel Assembly
visibility pack
colorByStrand 150,100,30 230,170,40
color 150,100,30
altColor 230,170,40
bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.assembly.bb
type bigBed 6
html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.assembly
searchIndex name
searchTrix ixIxx/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.assembly.ix
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
group map

track gap
longLabel AGP gap
shortLabel Gap (AGP defined)
visibility dense
color 0,0,0
bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.gap.bb
type bigBed 4
group map
html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.gap

track cytoBandIdeo
shortLabel Chromosome Band (Ideogram)
longLabel Ideogram for Orientation
group map
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.cytoBand.bb

track gc5Base
shortLabel GC Percent
longLabel GC Percent in 5-Base Windows
group map
visibility full
autoScale Off
maxHeightPixels 128:36:16
graphTypeDefault Bar
gridDefault OFF
windowingFunction Mean
color 0,0,0
altColor 128,128,128
viewLimits 30:70
type bigWig 0 100
bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.gc5Base.bw
html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.gc5Base

track tanDups
shortLabel Tandem Dups
longLabel Paired identical sequences
compositeTrack on
visibility hide
type bigBed 12
group map
html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.tanDups

    track tandemDups
    parent tanDups on
    shortLabel Tandem Dups
    longLabel Paired exactly identical sequence survey over entire genome assembly
    bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.tandemDups.bb
    type bigBed 12

track repeatMasker
shortLabel RepeatMasker
longLabel RepeatMasker Repetitive Elements
type bigRmsk 9 +
visibility pack
group varRep
bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.rmsk.bb
maxWindowToDraw 5000000
html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.repeatMasker

track simpleRepeat
shortLabel Simple Repeats
longLabel Simple Tandem Repeats by TRF
group varRep
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.simpleRepeat.bb
html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.simpleRepeat

track refSeqComposite
compositeTrack on
shortLabel NCBI RefSeq
longLabel RefSeq gene predictions from NCBI
group genes
visibility pack
type bigBed
dragAndDrop subTracks
allButtonPair on
dataVersion NCBI RefSeq GCF_028885655.1-RS_2023_04 (2023-04-11)
html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.refSeqComposite
priority 2

        track ncbiRefSeq
        parent refSeqComposite on
        color 12,12,120
        altColor 120,12,12
        shortLabel RefSeq All
        type bigGenePred
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.ncbiRefSeq.ix
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.ncbiRefSeq.bb
        longLabel NCBI RefSeq genes, curated and predicted sets (NM_*, XM_*, NR_*, XR_*, NP_* or YP_*)
        idXref ncbiRefSeqLink mrnaAcc name
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 1

        track ncbiRefSeqCurated
        color 12,12,120
        parent refSeqComposite on
        shortLabel RefSeq Curated
        longLabel NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)
        type bigGenePred
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.ncbiRefSeqCurated.ix
        idXref ncbiRefSeqLink mrnaAcc name
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.ncbiRefSeqCurated.bb
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 2

        track ncbiRefSeqPredicted
        color 12,12,120
        parent refSeqComposite on
        shortLabel RefSeq Predicted
        longLabel NCBI RefSeq genes, predicted subset (XM_* or XR_*)
        type bigGenePred
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.ncbiRefSeqPredicted.ix
        idXref ncbiRefSeqLink mrnaAcc name
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.ncbiRefSeqPredicted.bb
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 3

        track ncbiRefSeqOther
        color 32,32,32
        parent refSeqComposite on
        shortLabel RefSeq Other
        longLabel NCBI RefSeq other annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)
        priority 4
        searchIndex name
        searchTrix ixIxx/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.ncbiRefSeqOther.ix
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.ncbiRefSeqOther.bb
        type bigBed 12 +
        labelFields name
        skipEmptyFields on
        urls GeneID="https://www.ncbi.nlm.nih.gov/gene/$$" MIM="https://www.ncbi.nlm.nih.gov/omim/$$" HGNC="http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" FlyBase="http://flybase.org/reports/$$" WormBase="http://www.wormbase.org/db/gene/gene?name=$$" RGD="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" SGD="https://www.yeastgenome.org/locus/$$" miRBase="http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$$" ZFIN="https://zfin.org/$$" MGI="http://www.informatics.jax.org/marker/$$"

        track ncbiRefSeqPsl
        priority 5
        parent refSeqComposite off
        shortLabel RefSeq Alignments
        longLabel RefSeq Alignments of RNAs
        type bigPsl
        searchIndex name
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.bigPsl.bb
        indelDoubleInsert on
        indelQueryInsert on
        showDiffBasesAllScales .
        showDiffBasesMaxZoom 10000.0
        showCdsMaxZoom 10000.0
        showCdsAllScales .
        baseColorDefault diffCodons
        pslSequence no
        baseColorUseSequence lfExtra
        baseColorUseCds table given
        color 0,0,0

track cpgIslands
compositeTrack on
shortLabel CpG Islands
longLabel CpG Islands (Islands < 300 Bases are Light Green)
group regulation
visibility pack
type bigBed 4 +
html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.cpgIslands

    track cpgIslandExt
    parent cpgIslands off
    shortLabel CpG Islands
    longLabel CpG Islands (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 1
    bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.cpgIslandExt.bb

    track cpgIslandExtUnmasked
    parent cpgIslands on
    shortLabel Unmasked CpG
    longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 2
    bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.cpgIslandExtUnmasked.bb

track windowMasker
shortLabel WM + SDust
longLabel Genomic Intervals Masked by WindowMasker + SDust
group varRep
visibility dense
type bigBed 3
bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.windowMasker.bb
html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.windowMasker

track allGaps
shortLabel All Gaps
longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps
group map
visibility dense
type bigBed 3
bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.allGaps.bb
html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.allGaps

track augustus
shortLabel Augustus
longLabel Augustus Gene Predictions
group genes
visibility dense
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.augustus.bb
html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.augustus

track xenoRefGene
shortLabel RefSeq mRNAs
longLabel RefSeq mRNAs mapped to this assembly
group rna
visibility pack
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.xenoRefGene.bb
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
labelFields name,geneName,geneName2
defaultLabelFields geneName
searchIndex name
searchTrix ixIxx/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.xenoRefGene.ix
html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.xenoRefGene

track GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNet
compositeTrack on
shortLabel Chain/Net
longLabel Chain and Net alignments to target sequence: GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri
subGroup1 view Views chain=Chains net=Nets
subGroup2 species Species s000=hg38 s001=hs1 s002=mm10 s003=mm39
subGroup3 clade Clade c00=human
dragAndDrop subTracks
visibility hide
group compGeno
color 0,0,0
altColor 255,255,0
type bed 3
chainLinearGap loose
chainMinScore 5000
dimensions dimensionX=clade dimensionY=species
sortOrder species=+ view=+ clade=+
configurable on
html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet

    track GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNetViewchain
    shortLabel  Chains
    view chain
    visibility pack
    subTrack GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNet
    spectrum on

        track chainHg38
        subTrack GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNetViewchain off
        subGroups view=chain species=s000 clade=c00
        shortLabel hg38 Chain
        longLabel hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainHg38.bb
        linkDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainHg38Link.bb
        otherDb hg38
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 1

        track chainSynHg38
        subTrack GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNetViewchain off
        subGroups view=chain species=s000 clade=c00
        shortLabel hg38 synChain
        longLabel hg38 (Dec. 2013) Syntenic Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainSynHg38.bb
        linkDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainSynHg38Link.bb
        otherDb hg38
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 2

        track chainRBestHg38
        subTrack GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNetViewchain off
        subGroups view=chain species=s000 clade=c00
        shortLabel hg38 rbChain
        longLabel hg38 (Dec. 2013) Reciprocal Best Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainRBestHg38.bb
        linkDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainRBestHg38Link.bb
        otherDb hg38
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 3

        track chainHs1
        subTrack GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNetViewchain off
        subGroups view=chain species=s001 clade=c00
        shortLabel hs1 Chain
        longLabel hs1 (Jan. 2022) Chained Alignments
        type bigChain hs1
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainHs1.bb
        linkDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainHs1Link.bb
        otherDb hs1
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 4

        track chainSynHs1
        subTrack GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNetViewchain off
        subGroups view=chain species=s001 clade=c00
        shortLabel hs1 synChain
        longLabel hs1 (Jan. 2022) Syntenic Chained Alignments
        type bigChain hs1
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainSynHs1.bb
        linkDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainSynHs1Link.bb
        otherDb hs1
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 5

        track chainRBestHs1
        subTrack GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNetViewchain off
        subGroups view=chain species=s001 clade=c00
        shortLabel hs1 rbChain
        longLabel hs1 (Jan. 2022) Reciprocal Best Chained Alignments
        type bigChain hs1
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainRBestHs1.bb
        linkDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainRBestHs1Link.bb
        otherDb hs1
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 6

        track chainMm10
        subTrack GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNetViewchain off
        subGroups view=chain species=s002 clade=c00
        shortLabel mm10 Chain
        longLabel mm10 (Dec. 2011) Chained Alignments
        type bigChain mm10
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainMm10.bb
        linkDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainMm10Link.bb
        otherDb mm10
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 7

        track chainSynMm10
        subTrack GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNetViewchain off
        subGroups view=chain species=s002 clade=c00
        shortLabel mm10 synChain
        longLabel mm10 (Dec. 2011) Syntenic Chained Alignments
        type bigChain mm10
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainSynMm10.bb
        linkDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainSynMm10Link.bb
        otherDb mm10
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 8

        track chainRBestMm10
        subTrack GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNetViewchain off
        subGroups view=chain species=s002 clade=c00
        shortLabel mm10 rbChain
        longLabel mm10 (Dec. 2011) Reciprocal Best Chained Alignments
        type bigChain mm10
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainRBestMm10.bb
        linkDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainRBestMm10Link.bb
        otherDb mm10
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 9

        track chainMm39
        subTrack GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNetViewchain off
        subGroups view=chain species=s003 clade=c00
        shortLabel mm39 Chain
        longLabel mm39 (Jun. 2020) Chained Alignments
        type bigChain mm39
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainMm39.bb
        linkDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainMm39Link.bb
        otherDb mm39
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 10

        track chainSynMm39
        subTrack GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNetViewchain off
        subGroups view=chain species=s003 clade=c00
        shortLabel mm39 synChain
        longLabel mm39 (Jun. 2020) Syntenic Chained Alignments
        type bigChain mm39
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainSynMm39.bb
        linkDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainSynMm39Link.bb
        otherDb mm39
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 11

        track chainRBestMm39
        subTrack GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNetViewchain off
        subGroups view=chain species=s003 clade=c00
        shortLabel mm39 rbChain
        longLabel mm39 (Jun. 2020) Reciprocal Best Chained Alignments
        type bigChain mm39
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainRBestMm39.bb
        linkDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainRBestMm39Link.bb
        otherDb mm39
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 12

    track GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priMafNetViewnet
    shortLabel Nets
    view net
    visibility dense
    subTrack GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priChainNet

        track synNetHg38
        parent GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priMafNetViewnet
        subGroups view=net species=s000 clade=c00
        shortLabel hg38 synNet
        longLabel hg38 (some date) Syntenic Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.hg38.synNet.bb
        summary bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.hg38.synNet.summary.bb
        speciesOrder hg38
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 1

        track rbestNetHg38
        parent GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priMafNetViewnet
        subGroups view=net species=s000 clade=c00
        shortLabel hg38 rbestNet
        longLabel hg38 (some date) Reciprocal Best Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.hg38.rbestNet.bb
        summary bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.hg38.rbestNet.summary.bb
        speciesOrder hg38
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 2

        track synNetHs1
        parent GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priMafNetViewnet
        subGroups view=net species=s001 clade=c00
        shortLabel hs1 synNet
        longLabel hs1 (some date) Syntenic Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.hs1.synNet.bb
        summary bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.hs1.synNet.summary.bb
        speciesOrder hs1
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 3

        track rbestNetHs1
        parent GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priMafNetViewnet
        subGroups view=net species=s001 clade=c00
        shortLabel hs1 rbestNet
        longLabel hs1 (some date) Reciprocal Best Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.hs1.rbestNet.bb
        summary bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.hs1.rbestNet.summary.bb
        speciesOrder hs1
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 4

        track synNetMm10
        parent GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priMafNetViewnet
        subGroups view=net species=s002 clade=c00
        shortLabel mm10 synNet
        longLabel mm10 (some date) Syntenic Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.mm10.synNet.bb
        summary bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.mm10.synNet.summary.bb
        speciesOrder mm10
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 5

        track rbestNetMm10
        parent GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priMafNetViewnet
        subGroups view=net species=s002 clade=c00
        shortLabel mm10 rbestNet
        longLabel mm10 (some date) Reciprocal Best Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.mm10.rbestNet.bb
        summary bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.mm10.rbestNet.summary.bb
        speciesOrder mm10
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 6

        track synNetMm39
        parent GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priMafNetViewnet
        subGroups view=net species=s003 clade=c00
        shortLabel mm39 synNet
        longLabel mm39 (some date) Syntenic Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.mm39.synNet.bb
        summary bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.mm39.synNet.summary.bb
        speciesOrder mm39
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 7

        track rbestNetMm39
        parent GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_priMafNetViewnet
        subGroups view=net species=s003 clade=c00
        shortLabel mm39 rbestNet
        longLabel mm39 (some date) Reciprocal Best Net Alignment
        type bigMaf
        bigDataUrl bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.mm39.rbestNet.bb
        summary bbi/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.mm39.rbestNet.summary.bb
        speciesOrder mm39
        html html/GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri.chainNet
        priority 8