# Assembly name: NIAB-ARS_B.indTharparkar_mat_pri_1.0 # Organism name: Bos indicus (zebu cattle) # Infraspecific name: breed=Sahiwal x Tharparkar # Isolate: NIAB-ARS_2022 # Sex: female # Taxid: 9915 # BioSample: SAMN31208777 # BioProject: PRJNA897888 # Submitter: USDA ARS, NIAB # Date: 2023-03-24 # Assembly type: haploid (maternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAPFIJ01 # Assembly method: trioCanu v. 2.0 # Expected final version: yes # Genome coverage: 50.0x # Sequencing technology: PacBio Sequel # RefSeq category: Reference Genome # GenBank assembly accession: GCA_029378745.1 # RefSeq assembly accession: GCF_029378745.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_029378735.1 (paternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_029378855.1 GCF_029378855.1 Primary Assembly ## GCA_029378865.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold_chr1 assembled-molecule 1 Chromosome CM055574.1 = NC_091760.1 Primary Assembly 157911184 na scaffold_chr2 assembled-molecule 2 Chromosome CM055575.1 = NC_091761.1 Primary Assembly 135917887 na scaffold_chr3 assembled-molecule 3 Chromosome CM055576.1 = NC_091762.1 Primary Assembly 121181203 na scaffold_chr4 assembled-molecule 4 Chromosome CM055577.1 = NC_091763.1 Primary Assembly 120197852 na scaffold_chr5 assembled-molecule 5 Chromosome CM055578.1 = NC_091764.1 Primary Assembly 120591562 na scaffold_chr6 assembled-molecule 6 Chromosome CM055579.1 = NC_091765.1 Primary Assembly 118289152 na scaffold_chr7 assembled-molecule 7 Chromosome CM055580.1 = NC_091766.1 Primary Assembly 110482607 na scaffold_chr8 assembled-molecule 8 Chromosome CM055581.1 = NC_091767.1 Primary Assembly 112884483 na scaffold_chr9 assembled-molecule 9 Chromosome CM055582.1 = NC_091768.1 Primary Assembly 104596815 na scaffold_chr10 assembled-molecule 10 Chromosome CM055583.1 = NC_091769.1 Primary Assembly 103012185 na scaffold_chr11 assembled-molecule 11 Chromosome CM055584.1 = NC_091770.1 Primary Assembly 106890446 na scaffold_chr12 assembled-molecule 12 Chromosome CM055585.1 = NC_091771.1 Primary Assembly 89987802 na scaffold_chr13 assembled-molecule 13 Chromosome CM055586.1 = NC_091772.1 Primary Assembly 83482329 na scaffold_chr14 assembled-molecule 14 Chromosome CM055587.1 = NC_091773.1 Primary Assembly 82598283 na scaffold_chr15 assembled-molecule 15 Chromosome CM055588.1 = NC_091774.1 Primary Assembly 84500677 na scaffold_chr16 assembled-molecule 16 Chromosome CM055589.1 = NC_091775.1 Primary Assembly 81789864 na scaffold_chr17 assembled-molecule 17 Chromosome CM055590.1 = NC_091776.1 Primary Assembly 73057202 na scaffold_chr18 assembled-molecule 18 Chromosome CM055591.1 = NC_091777.1 Primary Assembly 66849670 na scaffold_chr19 assembled-molecule 19 Chromosome CM055592.1 = NC_091778.1 Primary Assembly 64652141 na scaffold_chr20 assembled-molecule 20 Chromosome CM055593.1 = NC_091779.1 Primary Assembly 71638450 na scaffold_chr21 assembled-molecule 21 Chromosome CM055594.1 = NC_091780.1 Primary Assembly 70292343 na scaffold_chr22 assembled-molecule 22 Chromosome CM055595.1 = NC_091781.1 Primary Assembly 60812048 na scaffold_chr23 assembled-molecule 23 Chromosome CM055596.1 = NC_091782.1 Primary Assembly 54576825 na scaffold_chr24 assembled-molecule 24 Chromosome CM055597.1 = NC_091783.1 Primary Assembly 62650116 na scaffold_chr25 assembled-molecule 25 Chromosome CM055598.1 = NC_091784.1 Primary Assembly 43362038 na scaffold_chr26 assembled-molecule 26 Chromosome CM055599.1 = NC_091785.1 Primary Assembly 51625147 na scaffold_chr27 assembled-molecule 27 Chromosome CM055600.1 = NC_091786.1 Primary Assembly 45649774 na scaffold_chr28 assembled-molecule 28 Chromosome CM055601.1 = NC_091787.1 Primary Assembly 45979751 na scaffold_chr29 assembled-molecule 29 Chromosome CM055602.1 = NC_091788.1 Primary Assembly 51672951 na scaffold_chrX assembled-molecule X Chromosome CM055603.1 = NC_091789.1 Primary Assembly 151859664 na scaffold_46 unplaced-scaffold na na JAPFIJ010000023.1 = NW_027223715.1 Primary Assembly 406905 na scaffold_47 unplaced-scaffold na na JAPFIJ010000024.1 = NW_027223716.1 Primary Assembly 1146087 na scaffold_51 unplaced-scaffold na na JAPFIJ010000025.1 = NW_027223717.1 Primary Assembly 535568 na scaffold_52 unplaced-scaffold na na JAPFIJ010000026.1 = NW_027223718.1 Primary Assembly 465919 na scaffold_53 unplaced-scaffold na na JAPFIJ010000027.1 = NW_027223719.1 Primary Assembly 773880 na scaffold_55 unplaced-scaffold na na JAPFIJ010000028.1 = NW_027223720.1 Primary Assembly 453872 na scaffold_56 unplaced-scaffold na na JAPFIJ010000029.1 = NW_027223721.1 Primary Assembly 750426 na scaffold_57 unplaced-scaffold na na JAPFIJ010000030.1 = NW_027223722.1 Primary Assembly 595625 na scaffold_59 unplaced-scaffold na na JAPFIJ010000031.1 = NW_027223723.1 Primary Assembly 625565 na scaffold_61 unplaced-scaffold na na JAPFIJ010000033.1 = NW_027223724.1 Primary Assembly 473292 na scaffold_62 unplaced-scaffold na na JAPFIJ010000034.1 = NW_027223725.1 Primary Assembly 491293 na scaffold_63 unplaced-scaffold na na JAPFIJ010000035.1 = NW_027223726.1 Primary Assembly 564927 na scaffold_64 unplaced-scaffold na na JAPFIJ010000036.1 = NW_027223727.1 Primary Assembly 534031 na scaffold_66 unplaced-scaffold na na JAPFIJ010000037.1 = NW_027223728.1 Primary Assembly 554902 na scaffold_68 unplaced-scaffold na na JAPFIJ010000038.1 = NW_027223729.1 Primary Assembly 291474 na scaffold_70 unplaced-scaffold na na JAPFIJ010000039.1 = NW_027223730.1 Primary Assembly 426115 na scaffold_71 unplaced-scaffold na na JAPFIJ010000040.1 = NW_027223731.1 Primary Assembly 401574 na scaffold_72 unplaced-scaffold na na JAPFIJ010000041.1 = NW_027223732.1 Primary Assembly 208408 na scaffold_73 unplaced-scaffold na na JAPFIJ010000042.1 = NW_027223733.1 Primary Assembly 366617 na scaffold_74 unplaced-scaffold na na JAPFIJ010000044.1 = NW_027223734.1 Primary Assembly 366037 na scaffold_76 unplaced-scaffold na na JAPFIJ010000045.1 = NW_027223735.1 Primary Assembly 303437 na scaffold_77 unplaced-scaffold na na JAPFIJ010000046.1 = NW_027223736.1 Primary Assembly 243912 na scaffold_78 unplaced-scaffold na na JAPFIJ010000047.1 = NW_027223737.1 Primary Assembly 230837 na scaffold_79 unplaced-scaffold na na JAPFIJ010000048.1 = NW_027223738.1 Primary Assembly 339630 na scaffold_80 unplaced-scaffold na na JAPFIJ010000049.1 = NW_027223739.1 Primary Assembly 251669 na scaffold_82 unplaced-scaffold na na JAPFIJ010000050.1 = NW_027223740.1 Primary Assembly 303341 na scaffold_84 unplaced-scaffold na na JAPFIJ010000051.1 = NW_027223741.1 Primary Assembly 229709 na scaffold_87 unplaced-scaffold na na JAPFIJ010000052.1 = NW_027223742.1 Primary Assembly 227370 na scaffold_88 unplaced-scaffold na na JAPFIJ010000053.1 = NW_027223743.1 Primary Assembly 217072 na scaffold_89 unplaced-scaffold na na JAPFIJ010000055.1 = NW_027223744.1 Primary Assembly 208394 na scaffold_99 unplaced-scaffold na na JAPFIJ010000056.1 = NW_027223745.1 Primary Assembly 79694 na scaffold_90 unplaced-scaffold na na JAPFIJ010000057.1 = NW_027223746.1 Primary Assembly 200589 na scaffold_95 unplaced-scaffold na na JAPFIJ010000058.1 = NW_027223747.1 Primary Assembly 128170 na scaffold_91 unplaced-scaffold na na JAPFIJ010000059.1 = NW_027223748.1 Primary Assembly 179149 na scaffold_94 unplaced-scaffold na na JAPFIJ010000060.1 = NW_027223749.1 Primary Assembly 132770 na scaffold_92 unplaced-scaffold na na JAPFIJ010000061.1 = NW_027223750.1 Primary Assembly 157591 na scaffold_93 unplaced-scaffold na na JAPFIJ010000062.1 = NW_027223751.1 Primary Assembly 147461 na MT assembled-molecule MT Mitochondrion CM055604.1 <> na non-nuclear 16337 na