# Assembly name: PCC_UOA_SB_1v2 # Organism name: Bubalus kerabau (carabao) # Infraspecific name: breed=swamp buffalo # Isolate: K-KA32 # Sex: female # Taxid: 3119969 # BioSample: SAMN31703457 # BioProject: PRJNA901059 # Submitter: University of Adelaide # Date: 2023-03-31 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JARFXY01 # Assembly method: HiFiasm v. 0.16.1-r375 # Expected final version: yes # Genome coverage: 34.0x # Sequencing technology: PacBio Sequel II # RefSeq category: Representative Genome # GenBank assembly accession: GCA_029407905.2 # RefSeq assembly accession: GCF_029407905.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_029407915.2 GCF_029407915.1 Primary Assembly ## GCA_029407925.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name 1 assembled-molecule 1 Chromosome CM055790.1 = NC_073624.1 Primary Assembly 280268733 na 2 assembled-molecule 2 Chromosome CM055791.1 = NC_073625.1 Primary Assembly 203873284 na 3 assembled-molecule 3 Chromosome CM055792.1 = NC_073626.1 Primary Assembly 190050606 na 4 assembled-molecule 4 Chromosome CM055793.1 = NC_073627.1 Primary Assembly 182813652 na 5 assembled-molecule 5 Chromosome CM055794.1 = NC_073628.1 Primary Assembly 135990451 na 6 assembled-molecule 6 Chromosome CM055795.1 = NC_073629.1 Primary Assembly 121846921 na 7 assembled-molecule 7 Chromosome CM055796.1 = NC_073630.1 Primary Assembly 121889674 na 8 assembled-molecule 8 Chromosome CM055797.1 = NC_073631.1 Primary Assembly 123314732 na 9 assembled-molecule 9 Chromosome CM055798.1 = NC_073632.1 Primary Assembly 112355845 na 10 assembled-molecule 10 Chromosome CM055799.1 = NC_073633.1 Primary Assembly 108390249 na 11 assembled-molecule 11 Chromosome CM055800.1 = NC_073634.1 Primary Assembly 109796162 na 12 assembled-molecule 12 Chromosome CM055801.1 = NC_073635.1 Primary Assembly 91172394 na 13 assembled-molecule 13 Chromosome CM055802.1 = NC_073636.1 Primary Assembly 84270603 na 14 assembled-molecule 14 Chromosome CM055803.1 = NC_073637.1 Primary Assembly 84646488 na 15 assembled-molecule 15 Chromosome CM055804.1 = NC_073638.1 Primary Assembly 85467828 na 16 assembled-molecule 16 Chromosome CM055805.1 = NC_073639.1 Primary Assembly 77343108 na 17 assembled-molecule 17 Chromosome CM055806.1 = NC_073640.1 Primary Assembly 70902912 na 18 assembled-molecule 18 Chromosome CM055807.1 = NC_073641.1 Primary Assembly 73943557 na 19 assembled-molecule 19 Chromosome CM055808.1 = NC_073642.1 Primary Assembly 70962441 na 20 assembled-molecule 20 Chromosome CM055809.1 = NC_073643.1 Primary Assembly 62850967 na 21 assembled-molecule 21 Chromosome CM055810.1 = NC_073644.1 Primary Assembly 65354041 na 22 assembled-molecule 22 Chromosome CM055811.1 = NC_073645.1 Primary Assembly 54521221 na 23 assembled-molecule 23 Chromosome CM055812.1 = NC_073646.1 Primary Assembly 43817392 na X assembled-molecule X Chromosome CM055813.1 = NC_073647.1 Primary Assembly 165470528 na scaffold_25 unplaced-scaffold na na JARFXY010000025.1 = NW_026577879.1 Primary Assembly 13206004 na scaffold_26 unplaced-scaffold na na JARFXY010000026.1 = NW_026577880.1 Primary Assembly 10860900 na scaffold_27 unplaced-scaffold na na JARFXY010000027.1 = NW_026577881.1 Primary Assembly 5929071 na scaffold_28 unplaced-scaffold na na JARFXY010000028.1 = NW_026577882.1 Primary Assembly 5800736 na scaffold_29 unplaced-scaffold na na JARFXY010000029.1 = NW_026577883.1 Primary Assembly 5623350 na scaffold_30 unplaced-scaffold na na JARFXY010000030.1 = NW_026577884.1 Primary Assembly 5535554 na scaffold_31 unplaced-scaffold na na JARFXY010000031.1 = NW_026577885.1 Primary Assembly 5339817 na scaffold_32 unplaced-scaffold na na JARFXY010000032.1 = NW_026577886.1 Primary Assembly 4587803 na scaffold_33 unplaced-scaffold na na JARFXY010000033.1 = NW_026577887.1 Primary Assembly 4429613 na scaffold_34 unplaced-scaffold na na JARFXY010000034.1 = NW_026577888.1 Primary Assembly 4326575 na scaffold_35 unplaced-scaffold na na JARFXY010000035.1 = NW_026577889.1 Primary Assembly 4123838 na scaffold_36 unplaced-scaffold na na JARFXY010000036.1 = NW_026577890.1 Primary Assembly 4018048 na scaffold_37 unplaced-scaffold na na JARFXY010000037.1 = NW_026577891.1 Primary Assembly 3684140 na scaffold_38 unplaced-scaffold na na JARFXY010000038.1 = NW_026577892.1 Primary Assembly 3295837 na scaffold_39 unplaced-scaffold na na JARFXY010000039.1 = NW_026577893.1 Primary Assembly 3284967 na scaffold_40 unplaced-scaffold na na JARFXY010000040.1 = NW_026577894.1 Primary Assembly 3267297 na scaffold_41 unplaced-scaffold na na JARFXY010000041.1 = NW_026577895.1 Primary Assembly 3235878 na scaffold_42 unplaced-scaffold na na JARFXY010000042.1 = NW_026577896.1 Primary Assembly 3124150 na scaffold_43 unplaced-scaffold na na JARFXY010000043.1 = NW_026577897.1 Primary Assembly 3100373 na scaffold_44 unplaced-scaffold na na JARFXY010000044.1 = NW_026577898.1 Primary Assembly 3078109 na scaffold_45 unplaced-scaffold na na JARFXY010000045.1 = NW_026577899.1 Primary Assembly 2893035 na scaffold_46 unplaced-scaffold na na JARFXY010000046.1 = NW_026577900.1 Primary Assembly 2660129 na scaffold_47 unplaced-scaffold na na JARFXY010000047.1 = NW_026577901.1 Primary Assembly 2546932 na scaffold_48 unplaced-scaffold na na JARFXY010000048.1 = NW_026577902.1 Primary Assembly 2512572 na scaffold_49 unplaced-scaffold na na JARFXY010000049.1 = NW_026577903.1 Primary Assembly 2511811 na scaffold_50 unplaced-scaffold na na JARFXY010000050.1 = NW_026577904.1 Primary Assembly 2501842 na scaffold_51 unplaced-scaffold na na JARFXY010000051.1 = NW_026577905.1 Primary Assembly 2284341 na scaffold_52 unplaced-scaffold na na JARFXY010000052.1 = NW_026577906.1 Primary Assembly 2227618 na scaffold_53 unplaced-scaffold na na JARFXY010000053.1 = NW_026577907.1 Primary Assembly 2162549 na scaffold_54 unplaced-scaffold na na JARFXY010000054.1 = NW_026577908.1 Primary Assembly 2067716 na scaffold_55 unplaced-scaffold na na JARFXY010000055.1 = NW_026577909.1 Primary Assembly 2060136 na scaffold_56 unplaced-scaffold na na JARFXY010000056.1 = NW_026577910.1 Primary Assembly 1992991 na scaffold_57 unplaced-scaffold na na JARFXY010000057.1 = NW_026577911.1 Primary Assembly 1958848 na scaffold_58 unplaced-scaffold na na JARFXY010000058.1 = NW_026577912.1 Primary Assembly 1876495 na scaffold_59 unplaced-scaffold na na JARFXY010000059.1 = NW_026577913.1 Primary Assembly 1844882 na scaffold_60 unplaced-scaffold na na JARFXY010000060.1 = NW_026577914.1 Primary Assembly 1780054 na scaffold_61 unplaced-scaffold na na JARFXY010000061.1 = NW_026577915.1 Primary Assembly 1755379 na scaffold_62 unplaced-scaffold na na JARFXY010000062.1 = NW_026577916.1 Primary Assembly 1714225 na scaffold_63 unplaced-scaffold na na JARFXY010000063.1 = NW_026577917.1 Primary Assembly 1642617 na scaffold_64 unplaced-scaffold na na JARFXY010000064.1 = NW_026577918.1 Primary Assembly 1592732 na scaffold_65 unplaced-scaffold na na JARFXY010000065.1 = NW_026577919.1 Primary Assembly 1577668 na scaffold_66 unplaced-scaffold na na JARFXY010000066.1 = NW_026577920.1 Primary Assembly 1565827 na scaffold_67 unplaced-scaffold na na JARFXY010000067.1 = NW_026577921.1 Primary Assembly 1485986 na scaffold_68 unplaced-scaffold na na JARFXY010000068.1 = NW_026577922.1 Primary Assembly 1462456 na scaffold_69 unplaced-scaffold na na JARFXY010000069.1 = NW_026577923.1 Primary Assembly 1446833 na scaffold_70 unplaced-scaffold na na JARFXY010000070.1 = NW_026577924.1 Primary Assembly 1443972 na scaffold_71 unplaced-scaffold na na JARFXY010000071.1 = NW_026577925.1 Primary Assembly 1388746 na scaffold_72 unplaced-scaffold na na JARFXY010000072.1 = NW_026577926.1 Primary Assembly 1320602 na scaffold_73 unplaced-scaffold na na JARFXY010000073.1 = NW_026577927.1 Primary Assembly 1290831 na scaffold_74 unplaced-scaffold na na JARFXY010000074.1 = NW_026577928.1 Primary Assembly 1271966 na scaffold_75 unplaced-scaffold na na JARFXY010000075.1 = NW_026577929.1 Primary Assembly 1256800 na scaffold_76 unplaced-scaffold na na JARFXY010000076.1 = NW_026577930.1 Primary Assembly 1196228 na scaffold_77 unplaced-scaffold na na JARFXY010000077.1 = NW_026577931.1 Primary Assembly 1184369 na scaffold_78 unplaced-scaffold na na JARFXY010000078.1 = NW_026577932.1 Primary Assembly 1159855 na scaffold_79 unplaced-scaffold na na JARFXY010000079.1 = NW_026577933.1 Primary Assembly 1108249 na scaffold_80 unplaced-scaffold na na JARFXY010000080.1 = NW_026577934.1 Primary Assembly 1103336 na scaffold_81 unplaced-scaffold na na JARFXY010000081.1 = NW_026577935.1 Primary Assembly 1087503 na scaffold_82 unplaced-scaffold na na JARFXY010000082.1 = NW_026577936.1 Primary Assembly 1051058 na scaffold_83 unplaced-scaffold na na JARFXY010000083.1 = NW_026577937.1 Primary Assembly 1044520 na scaffold_84 unplaced-scaffold na na JARFXY010000084.1 = NW_026577938.1 Primary Assembly 1039227 na scaffold_85 unplaced-scaffold na na JARFXY010000085.1 = NW_026577939.1 Primary Assembly 967803 na scaffold_86 unplaced-scaffold na na JARFXY010000086.1 = NW_026577940.1 Primary Assembly 817528 na scaffold_87 unplaced-scaffold na na JARFXY010000087.1 = NW_026577941.1 Primary Assembly 656573 na scaffold_88 unplaced-scaffold na na JARFXY010000088.1 = NW_026577942.1 Primary Assembly 616736 na scaffold_89 unplaced-scaffold na na JARFXY010000089.1 = NW_026577943.1 Primary Assembly 570656 na scaffold_90 unplaced-scaffold na na JARFXY010000090.1 = NW_026577944.1 Primary Assembly 499376 na scaffold_91 unplaced-scaffold na na JARFXY010000091.1 = NW_026577945.1 Primary Assembly 476369 na scaffold_92 unplaced-scaffold na na JARFXY010000092.1 = NW_026577946.1 Primary Assembly 475504 na scaffold_93 unplaced-scaffold na na JARFXY010000093.1 = NW_026577947.1 Primary Assembly 434073 na scaffold_94 unplaced-scaffold na na JARFXY010000094.1 = NW_026577948.1 Primary Assembly 414830 na scaffold_95 unplaced-scaffold na na JARFXY010000095.1 = NW_026577949.1 Primary Assembly 407433 na scaffold_96 unplaced-scaffold na na JARFXY010000096.1 = NW_026577950.1 Primary Assembly 386612 na scaffold_97 unplaced-scaffold na na JARFXY010000097.1 = NW_026577951.1 Primary Assembly 377528 na scaffold_98 unplaced-scaffold na na JARFXY010000098.1 = NW_026577952.1 Primary Assembly 306050 na scaffold_99 unplaced-scaffold na na JARFXY010000099.1 = NW_026577953.1 Primary Assembly 270252 na scaffold_100 unplaced-scaffold na na JARFXY010000100.1 = NW_026577954.1 Primary Assembly 259324 na scaffold_101 unplaced-scaffold na na JARFXY010000101.1 = NW_026577955.1 Primary Assembly 207256 na scaffold_102 unplaced-scaffold na na JARFXY010000102.1 = NW_026577956.1 Primary Assembly 202890 na scaffold_103 unplaced-scaffold na na JARFXY010000103.1 = NW_026577957.1 Primary Assembly 193463 na scaffold_104 unplaced-scaffold na na JARFXY010000104.1 = NW_026577958.1 Primary Assembly 99692 na scaffold_105 unplaced-scaffold na na JARFXY010000105.1 = NW_026577959.1 Primary Assembly 91002 na scaffold_106 unplaced-scaffold na na JARFXY010000106.1 = NW_026577960.1 Primary Assembly 86412 na scaffold_108 unplaced-scaffold na na JARFXY010000107.1 = NW_026577961.1 Primary Assembly 68227 na scaffold_109 unplaced-scaffold na na JARFXY010000108.1 = NW_026577962.1 Primary Assembly 55964 na scaffold_110 unplaced-scaffold na na JARFXY010000109.1 = NW_026577963.1 Primary Assembly 54178 na scaffold_112 unplaced-scaffold na na JARFXY010000111.1 = NW_026577964.1 Primary Assembly 52698 na scaffold_113 unplaced-scaffold na na JARFXY010000112.1 = NW_026577965.1 Primary Assembly 52097 na scaffold_114 unplaced-scaffold na na JARFXY010000113.1 = NW_026577966.1 Primary Assembly 49557 na scaffold_121 unplaced-scaffold na na JARFXY010000120.1 = NW_026577967.1 Primary Assembly 39007 na scaffold_127 unplaced-scaffold na na JARFXY010000126.1 = NW_026577968.1 Primary Assembly 33262 na scaffold_129 unplaced-scaffold na na JARFXY010000128.1 = NW_026577969.1 Primary Assembly 31381 na mtDNA assembled-molecule MT Mitochondrion CM055814.1 <> na non-nuclear 16358 na