# Assembly name: DtakHiC1v2 # Organism name: Drosophila takahashii (flies) # Infraspecific name: strain=IR98-3 E-12201 # Sex: female # Taxid: 29030 # BioSample: SAMN33872897 # BioProject: PRJNA948012 # Submitter: Washington University in St. Louis # Date: 2023-06-12 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JARPSC01 # Assembly method: Canu v. 2.1; Flye v. 2.8.1; quickmerge v. 0.3; 3D-DNA v. 180419 # Expected final version: no # Genome coverage: 66x # Sequencing technology: PacBio Sequel; Oxford Nanopore; Illumina # GenBank assembly accession: GCA_030179915.2 # RefSeq assembly accession: GCF_030179915.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_030179925.2 GCF_030179925.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Muller_B assembled-molecule 2L Chromosome CM058217.1 = NC_091678.1 Primary Assembly 39663708 na Muller_C assembled-molecule 2R Chromosome CM058218.1 = NC_091679.1 Primary Assembly 44772912 na Muller_D assembled-molecule 3L Chromosome CM058219.1 = NC_091680.1 Primary Assembly 34829487 na Muller_E assembled-molecule 3R Chromosome CM058220.1 = NC_091681.1 Primary Assembly 40588000 na Muller_F assembled-molecule 4 Chromosome CM058221.1 = NC_091682.1 Primary Assembly 3219735 na Muller_A assembled-molecule X Chromosome CM058222.1 = NC_091683.1 Primary Assembly 26793049 na scaffold_56 unplaced-scaffold na na JARPSC010000009.1 = NW_027221735.1 Primary Assembly 188000 na scaffold_126 unplaced-scaffold na na JARPSC010000010.1 = NW_027221643.1 Primary Assembly 158000 na scaffold_28 unplaced-scaffold na na JARPSC010000012.1 = NW_027221707.1 Primary Assembly 121693 na scaffold_39 unplaced-scaffold na na JARPSC010000013.1 = NW_027221717.1 Primary Assembly 115079 na scaffold_133 unplaced-scaffold na na JARPSC010000015.1 = NW_027221651.1 Primary Assembly 111995 na scaffold_195 unplaced-scaffold na na JARPSC010000016.1 = NW_027221694.1 Primary Assembly 105275 na scaffold_42 unplaced-scaffold na na JARPSC010000017.1 = NW_027221720.1 Primary Assembly 98728 na scaffold_10 unplaced-scaffold na na JARPSC010000019.1 = NW_027221615.1 Primary Assembly 96000 na scaffold_134 unplaced-scaffold na na JARPSC010000020.1 = NW_027221652.1 Primary Assembly 93711 na scaffold_53 unplaced-scaffold na na JARPSC010000022.1 = NW_027221732.1 Primary Assembly 86563 na scaffold_69 unplaced-scaffold na na JARPSC010000023.1 = NW_027221748.1 Primary Assembly 84324 na scaffold_25 unplaced-scaffold na na JARPSC010000024.1 = NW_027221705.1 Primary Assembly 83119 na scaffold_95 unplaced-scaffold na na JARPSC010000025.1 = NW_027221771.1 Primary Assembly 81801 na scaffold_83 unplaced-scaffold na na JARPSC010000026.1 = NW_027221763.1 Primary Assembly 79032 na scaffold_38 unplaced-scaffold na na JARPSC010000027.1 = NW_027221716.1 Primary Assembly 76505 na scaffold_86 unplaced-scaffold na na JARPSC010000028.1 = NW_027221766.1 Primary Assembly 76234 na scaffold_183 unplaced-scaffold na na JARPSC010000029.1 = NW_027221681.1 Primary Assembly 75611 na scaffold_35 unplaced-scaffold na na JARPSC010000031.1 = NW_027221713.1 Primary Assembly 73000 na scaffold_100 unplaced-scaffold na na JARPSC010000032.1 = NW_027221616.1 Primary Assembly 71848 na scaffold_185 unplaced-scaffold na na JARPSC010000033.1 = NW_027221683.1 Primary Assembly 70814 na scaffold_60 unplaced-scaffold na na JARPSC010000034.1 = NW_027221739.1 Primary Assembly 69304 na scaffold_85 unplaced-scaffold na na JARPSC010000035.1 = NW_027221765.1 Primary Assembly 66331 na scaffold_181 unplaced-scaffold na na JARPSC010000036.1 = NW_027221679.1 Primary Assembly 65939 na scaffold_55 unplaced-scaffold na na JARPSC010000037.1 = NW_027221734.1 Primary Assembly 65241 na scaffold_141 unplaced-scaffold na na JARPSC010000038.1 = NW_027221660.1 Primary Assembly 64089 na scaffold_15 unplaced-scaffold na na JARPSC010000039.1 = NW_027221668.1 Primary Assembly 62902 na scaffold_12 unplaced-scaffold na na JARPSC010000040.1 = NW_027221636.1 Primary Assembly 61508 na scaffold_87 unplaced-scaffold na na JARPSC010000041.1 = NW_027221767.1 Primary Assembly 61096 na scaffold_76 unplaced-scaffold na na JARPSC010000042.1 = NW_027221755.1 Primary Assembly 60722 na scaffold_70 unplaced-scaffold na na JARPSC010000043.1 = NW_027221749.1 Primary Assembly 60671 na scaffold_173 unplaced-scaffold na na JARPSC010000044.1 = NW_027221671.1 Primary Assembly 60347 na scaffold_58 unplaced-scaffold na na JARPSC010000045.1 = NW_027221737.1 Primary Assembly 59069 na scaffold_36 unplaced-scaffold na na JARPSC010000046.1 = NW_027221714.1 Primary Assembly 59000 na scaffold_26 unplaced-scaffold na na JARPSC010000048.1 = NW_027221706.1 Primary Assembly 57627 na scaffold_137 unplaced-scaffold na na JARPSC010000050.1 = NW_027221655.1 Primary Assembly 56086 na scaffold_178 unplaced-scaffold na na JARPSC010000051.1 = NW_027221675.1 Primary Assembly 54644 na scaffold_40 unplaced-scaffold na na JARPSC010000052.1 = NW_027221718.1 Primary Assembly 54320 na scaffold_57 unplaced-scaffold na na JARPSC010000055.1 = NW_027221736.1 Primary Assembly 53431 na scaffold_62 unplaced-scaffold na na JARPSC010000056.1 = NW_027221741.1 Primary Assembly 53356 na scaffold_144 unplaced-scaffold na na JARPSC010000058.1 = NW_027221663.1 Primary Assembly 53289 na scaffold_19 unplaced-scaffold na na JARPSC010000059.1 = NW_027221688.1 Primary Assembly 51948 na scaffold_109 unplaced-scaffold na na JARPSC010000060.1 = NW_027221624.1 Primary Assembly 51188 na scaffold_61 unplaced-scaffold na na JARPSC010000061.1 = NW_027221740.1 Primary Assembly 49770 na scaffold_196 unplaced-scaffold na na JARPSC010000062.1 = NW_027221695.1 Primary Assembly 49087 na scaffold_176 unplaced-scaffold na na JARPSC010000063.1 = NW_027221674.1 Primary Assembly 47792 na scaffold_17 unplaced-scaffold na na JARPSC010000064.1 = NW_027221670.1 Primary Assembly 47746 na scaffold_184 unplaced-scaffold na na JARPSC010000065.1 = NW_027221682.1 Primary Assembly 47264 na scaffold_37 unplaced-scaffold na na JARPSC010000067.1 = NW_027221715.1 Primary Assembly 46523 na scaffold_54 unplaced-scaffold na na JARPSC010000068.1 = NW_027221733.1 Primary Assembly 46361 na scaffold_194 unplaced-scaffold na na JARPSC010000069.1 = NW_027221693.1 Primary Assembly 45064 na scaffold_121 unplaced-scaffold na na JARPSC010000070.1 = NW_027221638.1 Primary Assembly 43696 na scaffold_80 unplaced-scaffold na na JARPSC010000071.1 = NW_027221760.1 Primary Assembly 43456 na scaffold_108 unplaced-scaffold na na JARPSC010000072.1 = NW_027221623.1 Primary Assembly 43217 na scaffold_90 unplaced-scaffold na na JARPSC010000073.1 = NW_027221770.1 Primary Assembly 43056 na scaffold_20 unplaced-scaffold na na JARPSC010000074.1 = NW_027221699.1 Primary Assembly 42444 na scaffold_193 unplaced-scaffold na na JARPSC010000075.1 = NW_027221692.1 Primary Assembly 42319 na scaffold_102 unplaced-scaffold na na JARPSC010000076.1 = NW_027221618.1 Primary Assembly 41771 na scaffold_190 unplaced-scaffold na na JARPSC010000077.1 = NW_027221689.1 Primary Assembly 41536 na scaffold_79 unplaced-scaffold na na JARPSC010000078.1 = NW_027221758.1 Primary Assembly 40989 na scaffold_182 unplaced-scaffold na na JARPSC010000079.1 = NW_027221680.1 Primary Assembly 40680 na scaffold_107 unplaced-scaffold na na JARPSC010000080.1 = NW_027221622.1 Primary Assembly 40077 na scaffold_179 unplaced-scaffold na na JARPSC010000081.1 = NW_027221676.1 Primary Assembly 37670 na scaffold_11 unplaced-scaffold na na JARPSC010000082.1 = NW_027221625.1 Primary Assembly 37622 na scaffold_21 unplaced-scaffold na na JARPSC010000084.1 = NW_027221701.1 Primary Assembly 37579 na scaffold_98 unplaced-scaffold na na JARPSC010000085.1 = NW_027221772.1 Primary Assembly 37360 na scaffold_73 unplaced-scaffold na na JARPSC010000086.1 = NW_027221752.1 Primary Assembly 37089 na scaffold_43 unplaced-scaffold na na JARPSC010000087.1 = NW_027221721.1 Primary Assembly 37007 na scaffold_16 unplaced-scaffold na na JARPSC010000088.1 = NW_027221669.1 Primary Assembly 36801 na scaffold_71 unplaced-scaffold na na JARPSC010000089.1 = NW_027221750.1 Primary Assembly 36466 na scaffold_197 unplaced-scaffold na na JARPSC010000090.1 = NW_027221696.1 Primary Assembly 35930 na scaffold_106 unplaced-scaffold na na JARPSC010000091.1 = NW_027221621.1 Primary Assembly 35816 na scaffold_174 unplaced-scaffold na na JARPSC010000092.1 = NW_027221672.1 Primary Assembly 35345 na scaffold_14 unplaced-scaffold na na JARPSC010000093.1 = NW_027221658.1 Primary Assembly 34756 na scaffold_66 unplaced-scaffold na na JARPSC010000094.1 = NW_027221745.1 Primary Assembly 34638 na scaffold_117 unplaced-scaffold na na JARPSC010000097.1 = NW_027221633.1 Primary Assembly 34178 na scaffold_103 unplaced-scaffold na na JARPSC010000098.1 = NW_027221619.1 Primary Assembly 34147 na scaffold_65 unplaced-scaffold na na JARPSC010000101.1 = NW_027221744.1 Primary Assembly 32570 na scaffold_99 unplaced-scaffold na na JARPSC010000102.1 = NW_027221773.1 Primary Assembly 32486 na scaffold_24 unplaced-scaffold na na JARPSC010000103.1 = NW_027221704.1 Primary Assembly 32363 na scaffold_175 unplaced-scaffold na na JARPSC010000104.1 = NW_027221673.1 Primary Assembly 32275 na scaffold_77 unplaced-scaffold na na JARPSC010000105.1 = NW_027221756.1 Primary Assembly 31789 na scaffold_67 unplaced-scaffold na na JARPSC010000106.1 = NW_027221746.1 Primary Assembly 31684 na scaffold_186 unplaced-scaffold na na JARPSC010000107.1 = NW_027221684.1 Primary Assembly 31132 na scaffold_145 unplaced-scaffold na na JARPSC010000109.1 = NW_027221664.1 Primary Assembly 30422 na scaffold_18 unplaced-scaffold na na JARPSC010000111.1 = NW_027221677.1 Primary Assembly 30351 na scaffold_68 unplaced-scaffold na na JARPSC010000112.1 = NW_027221747.1 Primary Assembly 30287 na scaffold_189 unplaced-scaffold na na JARPSC010000113.1 = NW_027221687.1 Primary Assembly 30144 na scaffold_31 unplaced-scaffold na na JARPSC010000114.1 = NW_027221709.1 Primary Assembly 30065 na scaffold_52 unplaced-scaffold na na JARPSC010000116.1 = NW_027221731.1 Primary Assembly 29953 na scaffold_81 unplaced-scaffold na na JARPSC010000117.1 = NW_027221761.1 Primary Assembly 29624 na scaffold_191 unplaced-scaffold na na JARPSC010000118.1 = NW_027221690.1 Primary Assembly 29478 na scaffold_8 unplaced-scaffold na na JARPSC010000119.1 = NW_027221759.1 Primary Assembly 29000 na scaffold_75 unplaced-scaffold na na JARPSC010000120.1 = NW_027221754.1 Primary Assembly 28993 na scaffold_101 unplaced-scaffold na na JARPSC010000121.1 = NW_027221617.1 Primary Assembly 28987 na scaffold_192 unplaced-scaffold na na JARPSC010000122.1 = NW_027221691.1 Primary Assembly 28839 na scaffold_51 unplaced-scaffold na na JARPSC010000123.1 = NW_027221730.1 Primary Assembly 28783 na scaffold_84 unplaced-scaffold na na JARPSC010000124.1 = NW_027221764.1 Primary Assembly 28764 na scaffold_44 unplaced-scaffold na na JARPSC010000125.1 = NW_027221722.1 Primary Assembly 28741 na scaffold_23 unplaced-scaffold na na JARPSC010000126.1 = NW_027221703.1 Primary Assembly 28178 na scaffold_13 unplaced-scaffold na na JARPSC010000127.1 = NW_027221647.1 Primary Assembly 28141 na scaffold_29 unplaced-scaffold na na JARPSC010000129.1 = NW_027221708.1 Primary Assembly 27908 na scaffold_147 unplaced-scaffold na na JARPSC010000131.1 = NW_027221666.1 Primary Assembly 27548 na scaffold_148 unplaced-scaffold na na JARPSC010000133.1 = NW_027221667.1 Primary Assembly 26196 na scaffold_88 unplaced-scaffold na na JARPSC010000134.1 = NW_027221768.1 Primary Assembly 25430 na scaffold_188 unplaced-scaffold na na JARPSC010000135.1 = NW_027221686.1 Primary Assembly 25270 na scaffold_78 unplaced-scaffold na na JARPSC010000136.1 = NW_027221757.1 Primary Assembly 25054 na scaffold_41 unplaced-scaffold na na JARPSC010000137.1 = NW_027221719.1 Primary Assembly 24619 na scaffold_22 unplaced-scaffold na na JARPSC010000139.1 = NW_027221702.1 Primary Assembly 24555 na scaffold_180 unplaced-scaffold na na JARPSC010000140.1 = NW_027221678.1 Primary Assembly 23915 na scaffold_105 unplaced-scaffold na na JARPSC010000141.1 = NW_027221620.1 Primary Assembly 23437 na scaffold_74 unplaced-scaffold na na JARPSC010000142.1 = NW_027221753.1 Primary Assembly 23214 na scaffold_187 unplaced-scaffold na na JARPSC010000143.1 = NW_027221685.1 Primary Assembly 22913 na scaffold_128 unplaced-scaffold na na JARPSC010000144.1 = NW_027221645.1 Primary Assembly 22578 na scaffold_46 unplaced-scaffold na na JARPSC010000145.1 = NW_027221724.1 Primary Assembly 20000 na scaffold_49 unplaced-scaffold na na JARPSC010000146.1 = NW_027221727.1 Primary Assembly 20000 na scaffold_45 unplaced-scaffold na na JARPSC010000147.1 = NW_027221723.1 Primary Assembly 19478 na scaffold_9 unplaced-scaffold na na JARPSC010000149.1 = NW_027221769.1 Primary Assembly 18000 na scaffold_34 unplaced-scaffold na na JARPSC010000150.1 = NW_027221712.1 Primary Assembly 18000 na scaffold_72 unplaced-scaffold na na JARPSC010000151.1 = NW_027221751.1 Primary Assembly 17911 na scaffold_33 unplaced-scaffold na na JARPSC010000153.1 = NW_027221711.1 Primary Assembly 17891 na scaffold_32 unplaced-scaffold na na JARPSC010000154.1 = NW_027221710.1 Primary Assembly 16109 na scaffold_47 unplaced-scaffold na na JARPSC010000155.1 = NW_027221725.1 Primary Assembly 16000 na scaffold_198 unplaced-scaffold na na JARPSC010000156.1 = NW_027221697.1 Primary Assembly 15887 na scaffold_111 unplaced-scaffold na na JARPSC010000157.1 = NW_027221627.1 Primary Assembly 14011 na scaffold_114 unplaced-scaffold na na JARPSC010000158.1 = NW_027221630.1 Primary Assembly 14000 na scaffold_130 unplaced-scaffold na na JARPSC010000159.1 = NW_027221648.1 Primary Assembly 13000 na scaffold_122 unplaced-scaffold na na JARPSC010000160.1 = NW_027221639.1 Primary Assembly 12911 na scaffold_5 unplaced-scaffold na na JARPSC010000161.1 = NW_027221728.1 Primary Assembly 12901 na scaffold_50 unplaced-scaffold na na JARPSC010000162.1 = NW_027221729.1 Primary Assembly 12099 na scaffold_125 unplaced-scaffold na na JARPSC010000163.1 = NW_027221642.1 Primary Assembly 11497 na scaffold_139 unplaced-scaffold na na JARPSC010000164.1 = NW_027221657.1 Primary Assembly 10989 na scaffold_48 unplaced-scaffold na na JARPSC010000165.1 = NW_027221726.1 Primary Assembly 9000 na scaffold_110 unplaced-scaffold na na JARPSC010000167.1 = NW_027221626.1 Primary Assembly 8000 na scaffold_124 unplaced-scaffold na na JARPSC010000168.1 = NW_027221641.1 Primary Assembly 7723 na scaffold_63 unplaced-scaffold na na JARPSC010000169.1 = NW_027221742.1 Primary Assembly 7711 na scaffold_82 unplaced-scaffold na na JARPSC010000170.1 = NW_027221762.1 Primary Assembly 6920 na scaffold_115 unplaced-scaffold na na JARPSC010000172.1 = NW_027221631.1 Primary Assembly 6000 na scaffold_131 unplaced-scaffold na na JARPSC010000173.1 = NW_027221649.1 Primary Assembly 6000 na scaffold_64 unplaced-scaffold na na JARPSC010000174.1 = NW_027221743.1 Primary Assembly 5000 na scaffold_112 unplaced-scaffold na na JARPSC010000175.1 = NW_027221628.1 Primary Assembly 5000 na scaffold_116 unplaced-scaffold na na JARPSC010000176.1 = NW_027221632.1 Primary Assembly 5000 na scaffold_142 unplaced-scaffold na na JARPSC010000177.1 = NW_027221661.1 Primary Assembly 4277 na scaffold_136 unplaced-scaffold na na JARPSC010000178.1 = NW_027221654.1 Primary Assembly 4130 na scaffold_127 unplaced-scaffold na na JARPSC010000179.1 = NW_027221644.1 Primary Assembly 4000 na scaffold_138 unplaced-scaffold na na JARPSC010000180.1 = NW_027221656.1 Primary Assembly 3870 na scaffold_119 unplaced-scaffold na na JARPSC010000181.1 = NW_027221635.1 Primary Assembly 2000 na scaffold_123 unplaced-scaffold na na JARPSC010000182.1 = NW_027221640.1 Primary Assembly 2000 na scaffold_132 unplaced-scaffold na na JARPSC010000183.1 = NW_027221650.1 Primary Assembly 2000 na scaffold_143 unplaced-scaffold na na JARPSC010000184.1 = NW_027221662.1 Primary Assembly 2000 na scaffold_59 unplaced-scaffold na na JARPSC010000185.1 = NW_027221738.1 Primary Assembly 1859 na scaffold_118 unplaced-scaffold na na JARPSC010000186.1 = NW_027221634.1 Primary Assembly 1043 na scaffold_113 unplaced-scaffold na na JARPSC010000187.1 = NW_027221629.1 Primary Assembly 1000 na scaffold_120 unplaced-scaffold na na JARPSC010000188.1 = NW_027221637.1 Primary Assembly 1000 na scaffold_129 unplaced-scaffold na na JARPSC010000189.1 = NW_027221646.1 Primary Assembly 1000 na scaffold_135 unplaced-scaffold na na JARPSC010000190.1 = NW_027221653.1 Primary Assembly 1000 na scaffold_140 unplaced-scaffold na na JARPSC010000191.1 = NW_027221659.1 Primary Assembly 1000 na scaffold_146 unplaced-scaffold na na JARPSC010000192.1 = NW_027221665.1 Primary Assembly 1000 na scaffold_199 unplaced-scaffold na na JARPSC010000193.1 = NW_027221698.1 Primary Assembly 957 na scaffold_200 unplaced-scaffold na na JARPSC010000194.1 = NW_027221700.1 Primary Assembly 863 na