# Assembly name: ASM3026506v1 # Organism name: Corythoichthys intestinalis (scribbled pipefish) # Isolate: RoL2023-P3 # Sex: male # Taxid: 161448 # BioSample: SAMN32966972 # BioProject: PRJNA851781 # Submitter: University of Idaho at Moscow # Date: 2023-06-20 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAQPVN01 # Assembly method: Hifiasm v. 0.16.1; Juicer v. 1.22.01; 3D-DNA v. 180922 # Expected final version: no # Genome coverage: 80.0x # Sequencing technology: Pacbio Hi-Fi # RefSeq category: Representative Genome # GenBank assembly accession: GCA_030265065.1 # RefSeq assembly accession: GCF_030265065.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_030265275.1 GCF_030265275.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name HiC_scaffold_1 assembled-molecule 1 Chromosome CM059149.1 = NC_080395.1 Primary Assembly 85101349 na HiC_scaffold_2 assembled-molecule 2 Chromosome CM059150.1 = NC_080396.1 Primary Assembly 78597127 na HiC_scaffold_3 assembled-molecule 3 Chromosome CM059151.1 = NC_080397.1 Primary Assembly 67622709 na HiC_scaffold_4 assembled-molecule 4 Chromosome CM059152.1 = NC_080398.1 Primary Assembly 66809286 na HiC_scaffold_5 assembled-molecule 5 Chromosome CM059153.1 = NC_080399.1 Primary Assembly 64136623 na HiC_scaffold_6 assembled-molecule 6 Chromosome CM059154.1 = NC_080400.1 Primary Assembly 63138654 na HiC_scaffold_7 assembled-molecule 7 Chromosome CM059155.1 = NC_080401.1 Primary Assembly 61090252 na HiC_scaffold_8 assembled-molecule 8 Chromosome CM059156.1 = NC_080402.1 Primary Assembly 60245081 na HiC_scaffold_9 assembled-molecule 9 Chromosome CM059157.1 = NC_080403.1 Primary Assembly 59712696 na HiC_scaffold_10 assembled-molecule 10 Chromosome CM059158.1 = NC_080404.1 Primary Assembly 59287289 na HiC_scaffold_11 assembled-molecule 11 Chromosome CM059159.1 = NC_080405.1 Primary Assembly 59038327 na HiC_scaffold_12 assembled-molecule 12 Chromosome CM059160.1 = NC_080406.1 Primary Assembly 58985565 na HiC_scaffold_13 assembled-molecule 13 Chromosome CM059161.1 = NC_080407.1 Primary Assembly 56773618 na HiC_scaffold_14 assembled-molecule 14 Chromosome CM059162.1 = NC_080408.1 Primary Assembly 56274649 na HiC_scaffold_15 assembled-molecule 15 Chromosome CM059163.1 = NC_080409.1 Primary Assembly 55217766 na HiC_scaffold_16 assembled-molecule 16 Chromosome CM059164.1 = NC_080410.1 Primary Assembly 53234536 na HiC_scaffold_17 assembled-molecule 17 Chromosome CM059165.1 = NC_080411.1 Primary Assembly 50297477 na HiC_scaffold_18 assembled-molecule 18 Chromosome CM059166.1 = NC_080412.1 Primary Assembly 48205108 na HiC_scaffold_19 assembled-molecule 19 Chromosome CM059167.1 = NC_080413.1 Primary Assembly 45231076 na HiC_scaffold_20 assembled-molecule 20 Chromosome CM059168.1 = NC_080414.1 Primary Assembly 41603256 na HiC_scaffold_21 assembled-molecule 21 Chromosome CM059169.1 = NC_080415.1 Primary Assembly 41219710 na HiC_scaffold_22 assembled-molecule 22 Chromosome CM059170.1 = NC_080416.1 Primary Assembly 38588721 na HiC_scaffold_100 unplaced-scaffold na na JAQPVN010000100.1 = NW_026651582.1 Primary Assembly 24327 na HiC_scaffold_101 unplaced-scaffold na na JAQPVN010000101.1 = NW_026651583.1 Primary Assembly 23480 na HiC_scaffold_102 unplaced-scaffold na na JAQPVN010000102.1 = NW_026651584.1 Primary Assembly 22885 na HiC_scaffold_103 unplaced-scaffold na na JAQPVN010000103.1 = NW_026651585.1 Primary Assembly 22234 na HiC_scaffold_104 unplaced-scaffold na na JAQPVN010000104.1 = NW_026651586.1 Primary Assembly 20545 na HiC_scaffold_105 unplaced-scaffold na na JAQPVN010000105.1 = NW_026651587.1 Primary Assembly 20478 na HiC_scaffold_106 unplaced-scaffold na na JAQPVN010000106.1 = NW_026651588.1 Primary Assembly 20309 na HiC_scaffold_107 unplaced-scaffold na na JAQPVN010000107.1 = NW_026651589.1 Primary Assembly 20061 na HiC_scaffold_108 unplaced-scaffold na na JAQPVN010000108.1 = NW_026651590.1 Primary Assembly 17523 na HiC_scaffold_109 unplaced-scaffold na na JAQPVN010000109.1 = NW_026651591.1 Primary Assembly 16569 na HiC_scaffold_23 unplaced-scaffold na na JAQPVN010000023.1 = NW_026651592.1 Primary Assembly 12220868 na HiC_scaffold_24 unplaced-scaffold na na JAQPVN010000024.1 = NW_026651593.1 Primary Assembly 8411368 na HiC_scaffold_25 unplaced-scaffold na na JAQPVN010000025.1 = NW_026651594.1 Primary Assembly 4759013 na HiC_scaffold_26 unplaced-scaffold na na JAQPVN010000026.1 = NW_026651595.1 Primary Assembly 4252115 na HiC_scaffold_27 unplaced-scaffold na na JAQPVN010000027.1 = NW_026651596.1 Primary Assembly 3715594 na HiC_scaffold_28 unplaced-scaffold na na JAQPVN010000028.1 = NW_026651597.1 Primary Assembly 3600853 na HiC_scaffold_29 unplaced-scaffold na na JAQPVN010000029.1 = NW_026651598.1 Primary Assembly 1810651 na HiC_scaffold_30 unplaced-scaffold na na JAQPVN010000030.1 = NW_026651599.1 Primary Assembly 1784132 na HiC_scaffold_31 unplaced-scaffold na na JAQPVN010000031.1 = NW_026651600.1 Primary Assembly 1475130 na HiC_scaffold_32 unplaced-scaffold na na JAQPVN010000032.1 = NW_026651601.1 Primary Assembly 1438010 na HiC_scaffold_33 unplaced-scaffold na na JAQPVN010000033.1 = NW_026651602.1 Primary Assembly 1334552 na HiC_scaffold_34 unplaced-scaffold na na JAQPVN010000034.1 = NW_026651603.1 Primary Assembly 1258931 na HiC_scaffold_35 unplaced-scaffold na na JAQPVN010000035.1 = NW_026651604.1 Primary Assembly 1178322 na HiC_scaffold_36 unplaced-scaffold na na JAQPVN010000036.1 = NW_026651605.1 Primary Assembly 1006078 na HiC_scaffold_37 unplaced-scaffold na na JAQPVN010000037.1 = NW_026651606.1 Primary Assembly 950332 na HiC_scaffold_38 unplaced-scaffold na na JAQPVN010000038.1 = NW_026651607.1 Primary Assembly 783786 na HiC_scaffold_39 unplaced-scaffold na na JAQPVN010000039.1 = NW_026651608.1 Primary Assembly 758863 na HiC_scaffold_40 unplaced-scaffold na na JAQPVN010000040.1 = NW_026651609.1 Primary Assembly 676247 na HiC_scaffold_41 unplaced-scaffold na na JAQPVN010000041.1 = NW_026651610.1 Primary Assembly 647849 na HiC_scaffold_42 unplaced-scaffold na na JAQPVN010000042.1 = NW_026651611.1 Primary Assembly 393990 na HiC_scaffold_43 unplaced-scaffold na na JAQPVN010000043.1 = NW_026651612.1 Primary Assembly 296501 na HiC_scaffold_44 unplaced-scaffold na na JAQPVN010000044.1 = NW_026651613.1 Primary Assembly 219611 na HiC_scaffold_45 unplaced-scaffold na na JAQPVN010000045.1 = NW_026651614.1 Primary Assembly 192075 na HiC_scaffold_46 unplaced-scaffold na na JAQPVN010000046.1 = NW_026651615.1 Primary Assembly 177461 na HiC_scaffold_47 unplaced-scaffold na na JAQPVN010000047.1 = NW_026651616.1 Primary Assembly 154119 na HiC_scaffold_48 unplaced-scaffold na na JAQPVN010000048.1 = NW_026651617.1 Primary Assembly 136764 na HiC_scaffold_49 unplaced-scaffold na na JAQPVN010000049.1 = NW_026651618.1 Primary Assembly 128096 na HiC_scaffold_50 unplaced-scaffold na na JAQPVN010000050.1 = NW_026651619.1 Primary Assembly 115257 na HiC_scaffold_51 unplaced-scaffold na na JAQPVN010000051.1 = NW_026651620.1 Primary Assembly 101391 na HiC_scaffold_52 unplaced-scaffold na na JAQPVN010000052.1 = NW_026651621.1 Primary Assembly 101134 na HiC_scaffold_53 unplaced-scaffold na na JAQPVN010000053.1 = NW_026651622.1 Primary Assembly 99262 na HiC_scaffold_54 unplaced-scaffold na na JAQPVN010000054.1 = NW_026651623.1 Primary Assembly 98237 na HiC_scaffold_55 unplaced-scaffold na na JAQPVN010000055.1 = NW_026651624.1 Primary Assembly 95494 na HiC_scaffold_56 unplaced-scaffold na na JAQPVN010000056.1 = NW_026651625.1 Primary Assembly 90551 na HiC_scaffold_57 unplaced-scaffold na na JAQPVN010000057.1 = NW_026651626.1 Primary Assembly 79665 na HiC_scaffold_58 unplaced-scaffold na na JAQPVN010000058.1 = NW_026651627.1 Primary Assembly 79550 na HiC_scaffold_59 unplaced-scaffold na na JAQPVN010000059.1 = NW_026651628.1 Primary Assembly 72747 na HiC_scaffold_60 unplaced-scaffold na na JAQPVN010000060.1 = NW_026651629.1 Primary Assembly 71620 na HiC_scaffold_61 unplaced-scaffold na na JAQPVN010000061.1 = NW_026651630.1 Primary Assembly 58651 na HiC_scaffold_62 unplaced-scaffold na na JAQPVN010000062.1 = NW_026651631.1 Primary Assembly 54510 na HiC_scaffold_63 unplaced-scaffold na na JAQPVN010000063.1 = NW_026651632.1 Primary Assembly 47025 na HiC_scaffold_64 unplaced-scaffold na na JAQPVN010000064.1 = NW_026651633.1 Primary Assembly 43977 na HiC_scaffold_65 unplaced-scaffold na na JAQPVN010000065.1 = NW_026651634.1 Primary Assembly 43457 na HiC_scaffold_66 unplaced-scaffold na na JAQPVN010000066.1 = NW_026651635.1 Primary Assembly 43374 na HiC_scaffold_67 unplaced-scaffold na na JAQPVN010000067.1 = NW_026651636.1 Primary Assembly 42482 na HiC_scaffold_68 unplaced-scaffold na na JAQPVN010000068.1 = NW_026651637.1 Primary Assembly 40590 na HiC_scaffold_69 unplaced-scaffold na na JAQPVN010000069.1 = NW_026651638.1 Primary Assembly 40539 na HiC_scaffold_70 unplaced-scaffold na na JAQPVN010000070.1 = NW_026651639.1 Primary Assembly 39756 na HiC_scaffold_71 unplaced-scaffold na na JAQPVN010000071.1 = NW_026651640.1 Primary Assembly 39022 na HiC_scaffold_72 unplaced-scaffold na na JAQPVN010000072.1 = NW_026651641.1 Primary Assembly 38136 na HiC_scaffold_73 unplaced-scaffold na na JAQPVN010000073.1 = NW_026651642.1 Primary Assembly 38028 na HiC_scaffold_74 unplaced-scaffold na na JAQPVN010000074.1 = NW_026651643.1 Primary Assembly 37868 na HiC_scaffold_75 unplaced-scaffold na na JAQPVN010000075.1 = NW_026651644.1 Primary Assembly 37472 na HiC_scaffold_76 unplaced-scaffold na na JAQPVN010000076.1 = NW_026651645.1 Primary Assembly 37135 na HiC_scaffold_77 unplaced-scaffold na na JAQPVN010000077.1 = NW_026651646.1 Primary Assembly 36086 na HiC_scaffold_78 unplaced-scaffold na na JAQPVN010000078.1 = NW_026651647.1 Primary Assembly 35994 na HiC_scaffold_79 unplaced-scaffold na na JAQPVN010000079.1 = NW_026651648.1 Primary Assembly 35492 na HiC_scaffold_80 unplaced-scaffold na na JAQPVN010000080.1 = NW_026651649.1 Primary Assembly 34628 na HiC_scaffold_81 unplaced-scaffold na na JAQPVN010000081.1 = NW_026651650.1 Primary Assembly 34401 na HiC_scaffold_82 unplaced-scaffold na na JAQPVN010000082.1 = NW_026651651.1 Primary Assembly 34201 na HiC_scaffold_83 unplaced-scaffold na na JAQPVN010000083.1 = NW_026651652.1 Primary Assembly 34177 na HiC_scaffold_84 unplaced-scaffold na na JAQPVN010000084.1 = NW_026651653.1 Primary Assembly 33859 na HiC_scaffold_85 unplaced-scaffold na na JAQPVN010000085.1 = NW_026651654.1 Primary Assembly 33224 na HiC_scaffold_86 unplaced-scaffold na na JAQPVN010000086.1 = NW_026651655.1 Primary Assembly 32837 na HiC_scaffold_87 unplaced-scaffold na na JAQPVN010000087.1 = NW_026651656.1 Primary Assembly 32507 na HiC_scaffold_88 unplaced-scaffold na na JAQPVN010000088.1 = NW_026651657.1 Primary Assembly 32259 na HiC_scaffold_89 unplaced-scaffold na na JAQPVN010000089.1 = NW_026651658.1 Primary Assembly 31983 na HiC_scaffold_90 unplaced-scaffold na na JAQPVN010000090.1 = NW_026651659.1 Primary Assembly 31755 na HiC_scaffold_91 unplaced-scaffold na na JAQPVN010000091.1 = NW_026651660.1 Primary Assembly 31115 na HiC_scaffold_92 unplaced-scaffold na na JAQPVN010000092.1 = NW_026651661.1 Primary Assembly 30506 na HiC_scaffold_93 unplaced-scaffold na na JAQPVN010000093.1 = NW_026651662.1 Primary Assembly 29883 na HiC_scaffold_94 unplaced-scaffold na na JAQPVN010000094.1 = NW_026651663.1 Primary Assembly 28960 na HiC_scaffold_95 unplaced-scaffold na na JAQPVN010000095.1 = NW_026651664.1 Primary Assembly 28268 na HiC_scaffold_96 unplaced-scaffold na na JAQPVN010000096.1 = NW_026651665.1 Primary Assembly 26402 na HiC_scaffold_97 unplaced-scaffold na na JAQPVN010000097.1 = NW_026651666.1 Primary Assembly 26335 na HiC_scaffold_98 unplaced-scaffold na na JAQPVN010000098.1 = NW_026651667.1 Primary Assembly 25776 na HiC_scaffold_99 unplaced-scaffold na na JAQPVN010000099.1 = NW_026651668.1 Primary Assembly 25108 na