# Assembly name: icTriCast1.1 # Organism name: Tribolium castaneum (red flour beetle) # Infraspecific name: strain=GA2 # Sex: male # Taxid: 7070 # BioSample: SAMN30135407 # BioProject: PRJNA865805 # Submitter: USDA-ARS Ag100Pest # Date: 2023-09-14 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JANKOB01 # Assembly method: HiFiASM v. 0.14.2-r315 # Expected final version: yes # Genome coverage: 30x # Sequencing technology: PacBio Sequel # RefSeq category: Representative Genome # GenBank assembly accession: GCA_031307605.1 # RefSeq assembly accession: GCF_031307605.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_031307295.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_031307905.1 GCF_031307905.1 Primary Assembly ## GCF_000696175.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Chromosome1 assembled-molecule 1 Chromosome CM062400.1 = NC_087394.1 Primary Assembly 37460696 na Chromosome2 assembled-molecule 2 Chromosome CM062401.1 = NC_087395.1 Primary Assembly 26832998 na ptg000002l assembled-molecule 3 Chromosome CM062402.1 = NC_087396.1 Primary Assembly 25071153 na ptg000004l assembled-molecule 4 Chromosome CM062403.1 = NC_087397.1 Primary Assembly 23115473 na ptg000007l assembled-molecule 5 Chromosome CM062404.1 = NC_087398.1 Primary Assembly 20636470 na Chromosome6 assembled-molecule 6 Chromosome CM062405.1 = NC_087399.1 Primary Assembly 19586254 na Chromosome7 assembled-molecule 7 Chromosome CM062406.1 = NC_087400.1 Primary Assembly 18717241 na Chromosome9 assembled-molecule 8 Chromosome CM062407.1 = NC_087401.1 Primary Assembly 17654693 na ptg000003l assembled-molecule 9 Chromosome CM062408.1 = NC_087402.1 Primary Assembly 16193484 na Chromosome10 assembled-molecule 10 Chromosome CM062409.1 = NC_087403.1 Primary Assembly 12086266 na Chromosome11 assembled-molecule 11 Chromosome CM062410.1 = NC_087404.1 Primary Assembly 4896840 na ptg000027l unplaced-scaffold na na JANKOB010000012.1 = NW_026986636.1 Primary Assembly 3053761 na ptg000022l unplaced-scaffold na na JANKOB010000013.1 = NW_026986634.1 Primary Assembly 2996357 na ptg000006l unplaced-scaffold na na JANKOB010000014.1 = NW_026986630.1 Primary Assembly 2128835 na ptg000017l unplaced-scaffold na na JANKOB010000015.1 = NW_026986632.1 Primary Assembly 1428587 na ptg000047l unplaced-scaffold na na JANKOB010000016.1 = NW_026986645.1 Primary Assembly 997142 na ptg000035l unplaced-scaffold na na JANKOB010000017.1 = NW_026986637.1 Primary Assembly 990728 na ptg000008c unplaced-scaffold na na JANKOB010000018.1 = NW_026986631.1 Primary Assembly 663613 na ptg000023l unplaced-scaffold na na JANKOB010000019.1 = NW_026986635.1 Primary Assembly 555960 na ptg000045l unplaced-scaffold na na JANKOB010000020.1 = NW_026986643.1 Primary Assembly 534426 na ptg000040l unplaced-scaffold na na JANKOB010000021.1 = NW_026986639.1 Primary Assembly 362944 na ptg000118l unplaced-scaffold na na JANKOB010000022.1 = NW_026986714.1 Primary Assembly 315162 na ptg000076l unplaced-scaffold na na JANKOB010000023.1 = NW_026986673.1 Primary Assembly 180449 na ptg000060l unplaced-scaffold na na JANKOB010000024.1 = NW_026986657.1 Primary Assembly 177618 na ptg000049l unplaced-scaffold na na JANKOB010000025.1 = NW_026986647.1 Primary Assembly 151853 na ptg000044l unplaced-scaffold na na JANKOB010000026.1 = NW_026986642.1 Primary Assembly 139255 na ptg000050l unplaced-scaffold na na JANKOB010000027.1 = NW_026986648.1 Primary Assembly 137508 na ptg000046l unplaced-scaffold na na JANKOB010000028.1 = NW_026986644.1 Primary Assembly 131989 na ptg000073l unplaced-scaffold na na JANKOB010000029.1 = NW_026986670.1 Primary Assembly 108533 na ptg000122l unplaced-scaffold na na JANKOB010000030.1 = NW_026986718.1 Primary Assembly 107255 na ptg000081l unplaced-scaffold na na JANKOB010000031.1 = NW_026986678.1 Primary Assembly 101036 na ptg000057l unplaced-scaffold na na JANKOB010000032.1 = NW_026986654.1 Primary Assembly 91488 na ptg000041l unplaced-scaffold na na JANKOB010000033.1 = NW_026986640.1 Primary Assembly 89057 na ptg000142l unplaced-scaffold na na JANKOB010000034.1 = NW_026986738.1 Primary Assembly 86213 na ptg000086l unplaced-scaffold na na JANKOB010000035.1 = NW_026986683.1 Primary Assembly 85816 na ptg000038l unplaced-scaffold na na JANKOB010000036.1 = NW_026986638.1 Primary Assembly 79769 na ptg000129l unplaced-scaffold na na JANKOB010000037.1 = NW_026986725.1 Primary Assembly 79454 na ptg000066l unplaced-scaffold na na JANKOB010000038.1 = NW_026986663.1 Primary Assembly 79420 na ptg000134l unplaced-scaffold na na JANKOB010000039.1 = NW_026986730.1 Primary Assembly 76310 na ptg000120l unplaced-scaffold na na JANKOB010000040.1 = NW_026986716.1 Primary Assembly 74648 na ptg000078l unplaced-scaffold na na JANKOB010000041.1 = NW_026986675.1 Primary Assembly 74156 na ptg000130l unplaced-scaffold na na JANKOB010000042.1 = NW_026986726.1 Primary Assembly 68927 na ptg000067l unplaced-scaffold na na JANKOB010000043.1 = NW_026986664.1 Primary Assembly 63531 na ptg000132l unplaced-scaffold na na JANKOB010000044.1 = NW_026986728.1 Primary Assembly 58568 na ptg000093l unplaced-scaffold na na JANKOB010000045.1 = NW_026986690.1 Primary Assembly 56826 na ptg000055l unplaced-scaffold na na JANKOB010000046.1 = NW_026986652.1 Primary Assembly 55080 na ptg000053c unplaced-scaffold na na JANKOB010000047.1 = NW_026986651.1 Primary Assembly 55047 na ptg000080l unplaced-scaffold na na JANKOB010000048.1 = NW_026986677.1 Primary Assembly 54601 na ptg000061l unplaced-scaffold na na JANKOB010000049.1 = NW_026986658.1 Primary Assembly 51276 na ptg000059l unplaced-scaffold na na JANKOB010000050.1 = NW_026986656.1 Primary Assembly 50923 na ptg000058l unplaced-scaffold na na JANKOB010000051.1 = NW_026986655.1 Primary Assembly 50541 na ptg000131l unplaced-scaffold na na JANKOB010000052.1 = NW_026986727.1 Primary Assembly 50349 na ptg000069l unplaced-scaffold na na JANKOB010000053.1 = NW_026986666.1 Primary Assembly 49364 na ptg000124l unplaced-scaffold na na JANKOB010000054.1 = NW_026986720.1 Primary Assembly 47658 na ptg000089l unplaced-scaffold na na JANKOB010000055.1 = NW_026986686.1 Primary Assembly 47348 na ptg000071l unplaced-scaffold na na JANKOB010000056.1 = NW_026986668.1 Primary Assembly 47243 na ptg000063l unplaced-scaffold na na JANKOB010000057.1 = NW_026986660.1 Primary Assembly 47061 na ptg000077l unplaced-scaffold na na JANKOB010000058.1 = NW_026986674.1 Primary Assembly 44721 na ptg000088l unplaced-scaffold na na JANKOB010000059.1 = NW_026986685.1 Primary Assembly 44522 na ptg000101l unplaced-scaffold na na JANKOB010000060.1 = NW_026986698.1 Primary Assembly 44158 na ptg000105l unplaced-scaffold na na JANKOB010000061.1 = NW_026986702.1 Primary Assembly 42329 na ptg000157l unplaced-scaffold na na JANKOB010000062.1 = NW_026986753.1 Primary Assembly 41542 na ptg000075l unplaced-scaffold na na JANKOB010000063.1 = NW_026986672.1 Primary Assembly 40528 na ptg000155l unplaced-scaffold na na JANKOB010000064.1 = NW_026986751.1 Primary Assembly 40285 na ptg000087l unplaced-scaffold na na JANKOB010000065.1 = NW_026986684.1 Primary Assembly 39657 na ptg000056l unplaced-scaffold na na JANKOB010000066.1 = NW_026986653.1 Primary Assembly 39533 na ptg000085l unplaced-scaffold na na JANKOB010000067.1 = NW_026986682.1 Primary Assembly 39208 na ptg000084l unplaced-scaffold na na JANKOB010000068.1 = NW_026986681.1 Primary Assembly 38193 na ptg000096l unplaced-scaffold na na JANKOB010000069.1 = NW_026986693.1 Primary Assembly 37791 na ptg000112l unplaced-scaffold na na JANKOB010000070.1 = NW_026986708.1 Primary Assembly 36322 na ptg000100l unplaced-scaffold na na JANKOB010000071.1 = NW_026986697.1 Primary Assembly 36211 na ptg000068l unplaced-scaffold na na JANKOB010000072.1 = NW_026986665.1 Primary Assembly 36189 na ptg000104l unplaced-scaffold na na JANKOB010000073.1 = NW_026986701.1 Primary Assembly 35726 na ptg000052l unplaced-scaffold na na JANKOB010000074.1 = NW_026986650.1 Primary Assembly 35465 na ptg000127l unplaced-scaffold na na JANKOB010000075.1 = NW_026986723.1 Primary Assembly 35401 na ptg000136l unplaced-scaffold na na JANKOB010000076.1 = NW_026986732.1 Primary Assembly 35376 na ptg000042c unplaced-scaffold na na JANKOB010000077.1 = NW_026986641.1 Primary Assembly 35282 na ptg000094l unplaced-scaffold na na JANKOB010000078.1 = NW_026986691.1 Primary Assembly 35281 na ptg000133l unplaced-scaffold na na JANKOB010000079.1 = NW_026986729.1 Primary Assembly 34845 na ptg000111l unplaced-scaffold na na JANKOB010000080.1 = NW_026986707.1 Primary Assembly 34790 na ptg000153l unplaced-scaffold na na JANKOB010000081.1 = NW_026986749.1 Primary Assembly 34333 na ptg000082l unplaced-scaffold na na JANKOB010000082.1 = NW_026986679.1 Primary Assembly 33992 na ptg000108l unplaced-scaffold na na JANKOB010000083.1 = NW_026986704.1 Primary Assembly 33971 na ptg000117l unplaced-scaffold na na JANKOB010000084.1 = NW_026986713.1 Primary Assembly 33673 na ptg000020l unplaced-scaffold na na JANKOB010000085.1 = NW_026986633.1 Primary Assembly 33635 na ptg000109l unplaced-scaffold na na JANKOB010000086.1 = NW_026986705.1 Primary Assembly 33475 na ptg000062l unplaced-scaffold na na JANKOB010000087.1 = NW_026986659.1 Primary Assembly 33392 na ptg000121l unplaced-scaffold na na JANKOB010000088.1 = NW_026986717.1 Primary Assembly 33351 na ptg000113l unplaced-scaffold na na JANKOB010000089.1 = NW_026986709.1 Primary Assembly 33309 na ptg000161l unplaced-scaffold na na JANKOB010000090.1 = NW_026986757.1 Primary Assembly 33097 na ptg000079l unplaced-scaffold na na JANKOB010000091.1 = NW_026986676.1 Primary Assembly 32979 na ptg000146l unplaced-scaffold na na JANKOB010000092.1 = NW_026986742.1 Primary Assembly 32682 na ptg000135l unplaced-scaffold na na JANKOB010000093.1 = NW_026986731.1 Primary Assembly 31896 na ptg000064l unplaced-scaffold na na JANKOB010000094.1 = NW_026986661.1 Primary Assembly 31794 na ptg000074l unplaced-scaffold na na JANKOB010000095.1 = NW_026986671.1 Primary Assembly 31766 na ptg000137l unplaced-scaffold na na JANKOB010000096.1 = NW_026986733.1 Primary Assembly 31540 na ptg000083l unplaced-scaffold na na JANKOB010000097.1 = NW_026986680.1 Primary Assembly 30825 na ptg000065l unplaced-scaffold na na JANKOB010000098.1 = NW_026986662.1 Primary Assembly 30240 na ptg000125l unplaced-scaffold na na JANKOB010000099.1 = NW_026986721.1 Primary Assembly 30115 na ptg000167l unplaced-scaffold na na JANKOB010000100.1 = NW_026986763.1 Primary Assembly 29972 na ptg000092l unplaced-scaffold na na JANKOB010000101.1 = NW_026986689.1 Primary Assembly 29848 na ptg000102l unplaced-scaffold na na JANKOB010000102.1 = NW_026986699.1 Primary Assembly 29789 na ptg000051l unplaced-scaffold na na JANKOB010000103.1 = NW_026986649.1 Primary Assembly 29010 na ptg000048l unplaced-scaffold na na JANKOB010000104.1 = NW_026986646.1 Primary Assembly 28952 na ptg000114l unplaced-scaffold na na JANKOB010000105.1 = NW_026986710.1 Primary Assembly 28897 na ptg000072l unplaced-scaffold na na JANKOB010000106.1 = NW_026986669.1 Primary Assembly 28407 na ptg000139l unplaced-scaffold na na JANKOB010000107.1 = NW_026986735.1 Primary Assembly 28139 na ptg000148l unplaced-scaffold na na JANKOB010000108.1 = NW_026986744.1 Primary Assembly 27314 na ptg000098l unplaced-scaffold na na JANKOB010000109.1 = NW_026986695.1 Primary Assembly 27129 na ptg000106l unplaced-scaffold na na JANKOB010000110.1 = NW_026986703.1 Primary Assembly 27112 na ptg000119l unplaced-scaffold na na JANKOB010000111.1 = NW_026986715.1 Primary Assembly 26738 na ptg000116l unplaced-scaffold na na JANKOB010000112.1 = NW_026986712.1 Primary Assembly 26507 na ptg000159l unplaced-scaffold na na JANKOB010000113.1 = NW_026986755.1 Primary Assembly 26238 na ptg000128l unplaced-scaffold na na JANKOB010000114.1 = NW_026986724.1 Primary Assembly 26187 na ptg000140l unplaced-scaffold na na JANKOB010000115.1 = NW_026986736.1 Primary Assembly 26107 na ptg000165l unplaced-scaffold na na JANKOB010000116.1 = NW_026986761.1 Primary Assembly 25175 na ptg000099l unplaced-scaffold na na JANKOB010000117.1 = NW_026986696.1 Primary Assembly 25039 na ptg000097l unplaced-scaffold na na JANKOB010000118.1 = NW_026986694.1 Primary Assembly 24786 na ptg000150l unplaced-scaffold na na JANKOB010000119.1 = NW_026986746.1 Primary Assembly 24657 na ptg000126l unplaced-scaffold na na JANKOB010000120.1 = NW_026986722.1 Primary Assembly 24545 na ptg000123l unplaced-scaffold na na JANKOB010000121.1 = NW_026986719.1 Primary Assembly 24311 na ptg000103l unplaced-scaffold na na JANKOB010000122.1 = NW_026986700.1 Primary Assembly 23618 na ptg000145l unplaced-scaffold na na JANKOB010000123.1 = NW_026986741.1 Primary Assembly 23556 na ptg000070l unplaced-scaffold na na JANKOB010000124.1 = NW_026986667.1 Primary Assembly 23187 na ptg000154l unplaced-scaffold na na JANKOB010000125.1 = NW_026986750.1 Primary Assembly 23100 na ptg000091l unplaced-scaffold na na JANKOB010000126.1 = NW_026986688.1 Primary Assembly 23019 na ptg000158l unplaced-scaffold na na JANKOB010000127.1 = NW_026986754.1 Primary Assembly 22945 na ptg000095l unplaced-scaffold na na JANKOB010000128.1 = NW_026986692.1 Primary Assembly 22728 na ptg000163l unplaced-scaffold na na JANKOB010000129.1 = NW_026986759.1 Primary Assembly 22653 na ptg000160l unplaced-scaffold na na JANKOB010000130.1 = NW_026986756.1 Primary Assembly 22623 na ptg000147l unplaced-scaffold na na JANKOB010000131.1 = NW_026986743.1 Primary Assembly 22422 na ptg000162l unplaced-scaffold na na JANKOB010000132.1 = NW_026986758.1 Primary Assembly 22347 na ptg000115l unplaced-scaffold na na JANKOB010000133.1 = NW_026986711.1 Primary Assembly 22079 na ptg000090l unplaced-scaffold na na JANKOB010000134.1 = NW_026986687.1 Primary Assembly 21950 na ptg000166l unplaced-scaffold na na JANKOB010000135.1 = NW_026986762.1 Primary Assembly 20691 na ptg000151l unplaced-scaffold na na JANKOB010000136.1 = NW_026986747.1 Primary Assembly 20495 na ptg000141l unplaced-scaffold na na JANKOB010000137.1 = NW_026986737.1 Primary Assembly 20290 na ptg000168l unplaced-scaffold na na JANKOB010000138.1 = NW_026986764.1 Primary Assembly 20004 na ptg000110l unplaced-scaffold na na JANKOB010000139.1 = NW_026986706.1 Primary Assembly 19915 na ptg000156l unplaced-scaffold na na JANKOB010000140.1 = NW_026986752.1 Primary Assembly 19911 na ptg000169l unplaced-scaffold na na JANKOB010000141.1 = NW_026986765.1 Primary Assembly 19774 na ptg000149l unplaced-scaffold na na JANKOB010000142.1 = NW_026986745.1 Primary Assembly 18864 na ptg000152l unplaced-scaffold na na JANKOB010000143.1 = NW_026986748.1 Primary Assembly 18833 na ptg000138l unplaced-scaffold na na JANKOB010000144.1 = NW_026986734.1 Primary Assembly 18565 na ptg000143l unplaced-scaffold na na JANKOB010000145.1 = NW_026986739.1 Primary Assembly 18316 na ptg000170l unplaced-scaffold na na JANKOB010000146.1 = NW_026986766.1 Primary Assembly 17011 na ptg000144l unplaced-scaffold na na JANKOB010000147.1 = NW_026986740.1 Primary Assembly 16947 na ptg000164l unplaced-scaffold na na JANKOB010000148.1 = NW_026986760.1 Primary Assembly 16183 na MT assembled-molecule MT Mitochondrion na <> NC_003081.2 non-nuclear 15881 na