# Assembly name: GRCr8 # Organism name: Rattus norvegicus (Norway rat) # Infraspecific name: strain=BN/NHsdMcwi # Sex: male # Taxid: 10116 # BioSample: SAMN38730095 # BioProject: PRJNA1027884 # Submitter: Genome Reference Consortium # Date: 2024-01-31 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAXUCZ01 # Assembly method: HiCanu v. 2022-09-10 # Expected final version: yes # Genome coverage: 40.0x # Sequencing technology: PacBio Sequel # RefSeq category: Representative Genome # GenBank assembly accession: GCA_036323735.1 # RefSeq assembly accession: GCF_036323735.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_036323745.1 GCF_036323745.1 Primary Assembly ## GCA_036323755.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM070391.1 = NC_086019.1 Primary Assembly 270518180 na chr2 assembled-molecule 2 Chromosome CM070392.1 = NC_086020.1 Primary Assembly 251712708 na chr3 assembled-molecule 3 Chromosome CM070393.1 = NC_086021.1 Primary Assembly 189428310 na chr4 assembled-molecule 4 Chromosome CM070394.1 = NC_086022.1 Primary Assembly 184426481 na chr5 assembled-molecule 5 Chromosome CM070395.1 = NC_086023.1 Primary Assembly 172190305 na chr6 assembled-molecule 6 Chromosome CM070396.1 = NC_086024.1 Primary Assembly 147156653 na chr7 assembled-molecule 7 Chromosome CM070397.1 = NC_086025.1 Primary Assembly 137014596 na chr8 assembled-molecule 8 Chromosome CM070398.1 = NC_086026.1 Primary Assembly 132782436 na chr9 assembled-molecule 9 Chromosome CM070399.1 = NC_086027.1 Primary Assembly 121768150 na chr10 assembled-molecule 10 Chromosome CM070400.1 = NC_086028.1 Primary Assembly 107713808 na chr11 assembled-molecule 11 Chromosome CM070401.1 = NC_086029.1 Primary Assembly 99753367 na chr12 assembled-molecule 12 Chromosome CM070402.1 = NC_086030.1 Primary Assembly 52308831 na chr13 assembled-molecule 13 Chromosome CM070403.1 = NC_086031.1 Primary Assembly 109350286 na chr14 assembled-molecule 14 Chromosome CM070404.1 = NC_086032.1 Primary Assembly 109089856 na chr15 assembled-molecule 15 Chromosome CM070405.1 = NC_086033.1 Primary Assembly 108192169 na chr16 assembled-molecule 16 Chromosome CM070406.1 = NC_086034.1 Primary Assembly 91442908 na chr17 assembled-molecule 17 Chromosome CM070407.1 = NC_086035.1 Primary Assembly 93515804 na chr18 assembled-molecule 18 Chromosome CM070408.1 = NC_086036.1 Primary Assembly 86134022 na chr19 assembled-molecule 19 Chromosome CM070409.1 = NC_086037.1 Primary Assembly 74246245 na chr20 assembled-molecule 20 Chromosome CM070410.1 = NC_086038.1 Primary Assembly 56021148 na chrX assembled-molecule X Chromosome CM070411.1 = NC_086039.1 Primary Assembly 157758123 na chrY assembled-molecule Y Chromosome CM070412.1 = NC_086040.1 Primary Assembly 59846084 na chr3_unlocalized_1 unlocalized-scaffold 3 Chromosome JAXUCZ010000023.1 = NW_026947362.1 Primary Assembly 2449928 na chr3_unlocalized_2 unlocalized-scaffold 3 Chromosome JAXUCZ010000024.1 = NW_026947363.1 Primary Assembly 855402 na chr3_unlocalized_3 unlocalized-scaffold 3 Chromosome JAXUCZ010000025.1 = NW_026947364.1 Primary Assembly 766022 na chr3_unlocalized_4 unlocalized-scaffold 3 Chromosome JAXUCZ010000026.1 = NW_026947365.1 Primary Assembly 247674 na chr3_unlocalized_5 unlocalized-scaffold 3 Chromosome JAXUCZ010000027.1 = NW_026947366.1 Primary Assembly 103484 na chrY_unlocalized_1 unlocalized-scaffold Y Chromosome JAXUCZ010000028.1 = NW_026947367.1 Primary Assembly 2057166 na chrY_unlocalized_2 unlocalized-scaffold Y Chromosome JAXUCZ010000029.1 = NW_026947378.1 Primary Assembly 1913966 na chrY_unlocalized_3 unlocalized-scaffold Y Chromosome JAXUCZ010000030.1 = NW_026947389.1 Primary Assembly 1696814 na chrY_unlocalized_4 unlocalized-scaffold Y Chromosome JAXUCZ010000031.1 = NW_026947400.1 Primary Assembly 1654197 na chrY_unlocalized_5 unlocalized-scaffold Y Chromosome JAXUCZ010000032.1 = NW_026947408.1 Primary Assembly 1487504 na chrY_unlocalized_6 unlocalized-scaffold Y Chromosome JAXUCZ010000033.1 = NW_026947409.1 Primary Assembly 1376544 na chrY_unlocalized_7 unlocalized-scaffold Y Chromosome JAXUCZ010000034.1 = NW_026947410.1 Primary Assembly 1160921 na chrY_unlocalized_8 unlocalized-scaffold Y Chromosome JAXUCZ010000035.1 = NW_026947411.1 Primary Assembly 1105183 na chrY_unlocalized_9 unlocalized-scaffold Y Chromosome JAXUCZ010000036.1 = NW_026947412.1 Primary Assembly 997779 na chrY_unlocalized_10 unlocalized-scaffold Y Chromosome JAXUCZ010000037.1 = NW_026947368.1 Primary Assembly 991656 na chrY_unlocalized_11 unlocalized-scaffold Y Chromosome JAXUCZ010000038.1 = NW_026947369.1 Primary Assembly 926565 na chrY_unlocalized_12 unlocalized-scaffold Y Chromosome JAXUCZ010000039.1 = NW_026947370.1 Primary Assembly 903984 na chrY_unlocalized_13 unlocalized-scaffold Y Chromosome JAXUCZ010000040.1 = NW_026947371.1 Primary Assembly 890273 na chrY_unlocalized_14 unlocalized-scaffold Y Chromosome JAXUCZ010000041.1 = NW_026947372.1 Primary Assembly 885491 na chrY_unlocalized_15 unlocalized-scaffold Y Chromosome JAXUCZ010000042.1 = NW_026947373.1 Primary Assembly 793495 na chrY_unlocalized_16 unlocalized-scaffold Y Chromosome JAXUCZ010000043.1 = NW_026947374.1 Primary Assembly 779953 na chrY_unlocalized_17 unlocalized-scaffold Y Chromosome JAXUCZ010000044.1 = NW_026947375.1 Primary Assembly 745465 na chrY_unlocalized_18 unlocalized-scaffold Y Chromosome JAXUCZ010000045.1 = NW_026947376.1 Primary Assembly 720549 na chrY_unlocalized_19 unlocalized-scaffold Y Chromosome JAXUCZ010000046.1 = NW_026947377.1 Primary Assembly 716979 na chrY_unlocalized_20 unlocalized-scaffold Y Chromosome JAXUCZ010000047.1 = NW_026947379.1 Primary Assembly 654985 na chrY_unlocalized_21 unlocalized-scaffold Y Chromosome JAXUCZ010000048.1 = NW_026947380.1 Primary Assembly 651350 na chrY_unlocalized_22 unlocalized-scaffold Y Chromosome JAXUCZ010000049.1 = NW_026947381.1 Primary Assembly 647876 na chrY_unlocalized_23 unlocalized-scaffold Y Chromosome JAXUCZ010000050.1 = NW_026947382.1 Primary Assembly 603879 na chrY_unlocalized_24 unlocalized-scaffold Y Chromosome JAXUCZ010000051.1 = NW_026947383.1 Primary Assembly 591746 na chrY_unlocalized_25 unlocalized-scaffold Y Chromosome JAXUCZ010000052.1 = NW_026947384.1 Primary Assembly 574096 na chrY_unlocalized_26 unlocalized-scaffold Y Chromosome JAXUCZ010000053.1 = NW_026947385.1 Primary Assembly 564375 na chrY_unlocalized_27 unlocalized-scaffold Y Chromosome JAXUCZ010000054.1 = NW_026947386.1 Primary Assembly 542769 na chrY_unlocalized_28 unlocalized-scaffold Y Chromosome JAXUCZ010000055.1 = NW_026947387.1 Primary Assembly 523357 na chrY_unlocalized_29 unlocalized-scaffold Y Chromosome JAXUCZ010000056.1 = NW_026947388.1 Primary Assembly 496250 na chrY_unlocalized_30 unlocalized-scaffold Y Chromosome JAXUCZ010000057.1 = NW_026947390.1 Primary Assembly 474392 na chrY_unlocalized_31 unlocalized-scaffold Y Chromosome JAXUCZ010000058.1 = NW_026947391.1 Primary Assembly 446190 na chrY_unlocalized_32 unlocalized-scaffold Y Chromosome JAXUCZ010000059.1 = NW_026947392.1 Primary Assembly 429359 na chrY_unlocalized_33 unlocalized-scaffold Y Chromosome JAXUCZ010000060.1 = NW_026947393.1 Primary Assembly 413835 na chrY_unlocalized_34 unlocalized-scaffold Y Chromosome JAXUCZ010000061.1 = NW_026947394.1 Primary Assembly 381568 na chrY_unlocalized_35 unlocalized-scaffold Y Chromosome JAXUCZ010000062.1 = NW_026947395.1 Primary Assembly 350964 na chrY_unlocalized_36 unlocalized-scaffold Y Chromosome JAXUCZ010000063.1 = NW_026947396.1 Primary Assembly 316310 na chrY_unlocalized_37 unlocalized-scaffold Y Chromosome JAXUCZ010000064.1 = NW_026947397.1 Primary Assembly 288775 na chrY_unlocalized_38 unlocalized-scaffold Y Chromosome JAXUCZ010000065.1 = NW_026947398.1 Primary Assembly 285824 na chrY_unlocalized_39 unlocalized-scaffold Y Chromosome JAXUCZ010000066.1 = NW_026947399.1 Primary Assembly 285534 na chrY_unlocalized_40 unlocalized-scaffold Y Chromosome JAXUCZ010000067.1 = NW_026947401.1 Primary Assembly 285417 na chrY_unlocalized_41 unlocalized-scaffold Y Chromosome JAXUCZ010000068.1 = NW_026947402.1 Primary Assembly 214303 na chrY_unlocalized_42 unlocalized-scaffold Y Chromosome JAXUCZ010000069.1 = NW_026947403.1 Primary Assembly 184496 na chrY_unlocalized_43 unlocalized-scaffold Y Chromosome JAXUCZ010000070.1 = NW_026947404.1 Primary Assembly 148250 na chrY_unlocalized_44 unlocalized-scaffold Y Chromosome JAXUCZ010000071.1 = NW_026947405.1 Primary Assembly 130679 na chrY_unlocalized_45 unlocalized-scaffold Y Chromosome JAXUCZ010000072.1 = NW_026947406.1 Primary Assembly 120978 na chrY_unlocalized_46 unlocalized-scaffold Y Chromosome JAXUCZ010000073.1 = NW_026947407.1 Primary Assembly 106421 na scaffold_1 unplaced-scaffold na na JAXUCZ010000074.1 = NW_026947413.1 Primary Assembly 105589 na scaffold_2 unplaced-scaffold na na JAXUCZ010000075.1 = NW_026947414.1 Primary Assembly 98185 na scaffold_3 unplaced-scaffold na na JAXUCZ010000076.1 = NW_026947415.1 Primary Assembly 65976 na chrM assembled-molecule MT Mitochondrion CM070413.1 <> na non-nuclear 16315 na