hub GCF_036323735.1 genome assembly
shortLabel Norway rat (BN/NHsdMcwi 2024 refseq)
longLabel Norway rat (BN/NHsdMcwi 2024 refseq)/Rattus norvegicus/GCF_036323735.1_GRCr8 genome assembly
useOneFile on
email hclawson@ucsc.edu
descriptionUrl html/GCF_036323735.1_GRCr8.description.html

genome GCF_036323735.1
taxId 10116
groups groups.txt
description Norway rat (BN/NHsdMcwi 2024 refseq)
twoBitPath GCF_036323735.1.2bit
twoBitBptUrl GCF_036323735.1.2bit.bpt
chromSizes GCF_036323735.1.chrom.sizes.txt
chromAliasBb GCF_036323735.1.chromAlias.bb
chromAuthority ucsc
organism GRCr8 Jan. 2024
defaultPos NC_086019.1:90172726-90182726
scientificName Rattus norvegicus
htmlPath html/GCF_036323735.1_GRCr8.description.html
blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/036/323/735/GCF_036323735.1
transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/036/323/735/GCF_036323735.1
isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/036/323/735/GCF_036323735.1
liftOver.hg19 liftOver/GCF_036323735.1ToHg19.over.chain.gz
liftOver.mm10 liftOver/GCF_036323735.1ToMm10.over.chain.gz
liftOver.rn6 liftOver/GCF_036323735.1ToRn6.over.chain.gz

track assembly
longLabel Assembly
shortLabel Assembly
visibility hide
colorByStrand 150,100,30 230,170,40
color 150,100,30
altColor 230,170,40
bigDataUrl bbi/GCF_036323735.1_GRCr8.assembly.bb
type bigBed 6
html html/GCF_036323735.1_GRCr8.assembly
searchIndex name
searchTrix ixIxx/GCF_036323735.1_GRCr8.assembly.ix
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
group map

track cytoBandIdeo
shortLabel Chromosome Band (Ideogram)
longLabel Ideogram for Orientation
group map
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_036323735.1_GRCr8.cytoBand.bb

track gc5Base
shortLabel GC Percent
longLabel GC Percent in 5-Base Windows
group map
visibility dense
autoScale Off
maxHeightPixels 128:36:16
graphTypeDefault Bar
gridDefault OFF
windowingFunction Mean
color 0,0,0
altColor 128,128,128
viewLimits 30:70
type bigWig 0 100
bigDataUrl bbi/GCF_036323735.1_GRCr8.gc5Base.bw
html html/GCF_036323735.1_GRCr8.gc5Base

track tanDups
shortLabel Tandem Dups
longLabel Paired identical sequences
compositeTrack on
visibility hide
type bigBed 12
group map
html html/GCF_036323735.1_GRCr8.tanDups

    track gapOverlap
    parent tanDups on
    shortLabel Gap Overlaps
    longLabel Paired exactly identical sequence on each side of a gap
    bigDataUrl bbi/GCF_036323735.1_GRCr8.gapOverlap.bb
    type bigBed 12

    track tandemDups
    parent tanDups on
    shortLabel Tandem Dups
    longLabel Paired exactly identical sequence survey over entire genome assembly
    bigDataUrl bbi/GCF_036323735.1_GRCr8.tandemDups.bb
    type bigBed 12

track repeatMasker
shortLabel RepeatMasker
longLabel RepeatMasker Repetitive Elements
type bigRmsk 9 +
visibility pack
group varRep
bigDataUrl bbi/GCF_036323735.1_GRCr8.rmsk.bb
maxWindowToDraw 5000000
html html/GCF_036323735.1_GRCr8.repeatMasker

track repeatModeler
shortLabel RepeatModeler
longLabel RepeatModeler Repetitive Elements
type bigRmsk 9 +
visibility hide
group varRep
bigDataUrl bbi/GCF_036323735.1_GRCr8.rModel.bb
xrefDataUrl bbi/GCF_036323735.1_GRCr8.rModel.align.bb
maxWindowToDraw 5000000
html html/GCF_036323735.1_GRCr8.repeatModeler

track simpleRepeat
shortLabel Simple Repeats
longLabel Simple Tandem Repeats by TRF
group varRep
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_036323735.1_GRCr8.simpleRepeat.bb
html html/GCF_036323735.1_GRCr8.simpleRepeat

track refSeqComposite
compositeTrack on
shortLabel NCBI RefSeq
longLabel RefSeq gene predictions from NCBI
group genes
visibility pack
type bigBed
dragAndDrop subTracks
allButtonPair on
dataVersion NCBI RefSeq GCF_036323735.1-RS_2024_02 (2024-02-24)
html html/GCF_036323735.1_GRCr8.refSeqComposite
priority 2

        track ncbiRefSeq
        parent refSeqComposite on
        color 12,12,120
        shortLabel RefSeq All
        type bigGenePred
        urls geneName="https://www.ncbi.nlm.nih.gov/nuccore/$$?report=genbank" geneName2="https://www.ncbi.nlm.nih.gov/datasets/gene/$D/?search=$$"
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_036323735.1_GRCr8.ncbiRefSeq.ix
        bigDataUrl bbi/GCF_036323735.1_GRCr8.ncbiRefSeq.bb
        longLabel NCBI RefSeq genes, curated and predicted sets (NM_*, XM_*, NR_*, XR_*, NP_* or YP_*)
        idXref ncbiRefSeqLink mrnaAcc name
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 1

        track ncbiRefSeqCurated
        color 12,12,120
        parent refSeqComposite on
        shortLabel RefSeq Curated
        longLabel NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)
        type bigGenePred
        urls geneName="https://www.ncbi.nlm.nih.gov/nuccore/$$?report=genbank" geneName2="https://www.ncbi.nlm.nih.gov/datasets/gene/$D/?search=$$"
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_036323735.1_GRCr8.ncbiRefSeqCurated.ix
        idXref ncbiRefSeqLink mrnaAcc name
        bigDataUrl bbi/GCF_036323735.1_GRCr8.ncbiRefSeqCurated.bb
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 2

        track ncbiRefSeqPredicted
        color 12,12,120
        parent refSeqComposite on
        shortLabel RefSeq Predicted
        longLabel NCBI RefSeq genes, predicted subset (XM_* or XR_*)
        type bigGenePred
        urls geneName="https://www.ncbi.nlm.nih.gov/nuccore/$$?report=genbank" geneName2="https://www.ncbi.nlm.nih.gov/datasets/gene/$D/?search=$$"
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_036323735.1_GRCr8.ncbiRefSeqPredicted.ix
        idXref ncbiRefSeqLink mrnaAcc name
        bigDataUrl bbi/GCF_036323735.1_GRCr8.ncbiRefSeqPredicted.bb
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 3

        track ncbiRefSeqOther
        color 32,32,32
        parent refSeqComposite on
        shortLabel RefSeq Other
        longLabel NCBI RefSeq other annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)
        priority 4
        searchIndex name
        searchTrix ixIxx/GCF_036323735.1_GRCr8.ncbiRefSeqOther.ix
        bigDataUrl bbi/GCF_036323735.1_GRCr8.ncbiRefSeqOther.bb
        type bigBed 12 +
        labelFields name
        skipEmptyFields on
        urls GeneID="https://www.ncbi.nlm.nih.gov/gene/$$" MIM="https://www.ncbi.nlm.nih.gov/omim/$$" HGNC="http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" FlyBase="http://flybase.org/reports/$$" WormBase="http://www.wormbase.org/db/gene/gene?name=$$" RGD="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" SGD="https://www.yeastgenome.org/locus/$$" miRBase="http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$$" ZFIN="https://zfin.org/$$" MGI="http://www.informatics.jax.org/marker/$$"

        track ncbiRefSeqPsl
        priority 5
        parent refSeqComposite off
        shortLabel RefSeq Alignments
        longLabel RefSeq Alignments of RNAs
        type bigPsl
        searchIndex name
        bigDataUrl bbi/GCF_036323735.1_GRCr8.bigPsl.bb
        indelDoubleInsert on
        indelQueryInsert on
        showDiffBasesAllScales .
        showDiffBasesMaxZoom 10000.0
        showCdsMaxZoom 10000.0
        showCdsAllScales .
        baseColorDefault diffCodons
        pslSequence no
        baseColorUseSequence lfExtra
        baseColorUseCds table given
        color 0,0,0

        track ncbiRefSeqSelect
        parent refSeqComposite off
        priority 7
        type bigGenePred
        shortLabel RefSeq Select
        longLabel NCBI RefSeq/MANE Select: one representative transcript per protein-coding gene
        idXref ncbiRefSeqLink mrnaAcc name
        color 20,20,160
        labelFields name,geneName,geneName2
        searchIndex name
        searchTrix ixIxx/GCF_036323735.1_GRCr8.ncbiRefSeqSelectCurated.ix
        bigDataUrl bbi/GCF_036323735.1_GRCr8.ncbiRefSeqSelectCurated.bb
        baseColorUseCds given
        baseColorDefault genomicCodons

track cpgIslands
compositeTrack on
shortLabel CpG Islands
longLabel CpG Islands (Islands < 300 Bases are Light Green)
group regulation
visibility dense
type bigBed 4 +
html html/GCF_036323735.1_GRCr8.cpgIslands

    track cpgIslandExt
    parent cpgIslands off
    shortLabel CpG Islands
    longLabel CpG Islands (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 1
    bigDataUrl bbi/GCF_036323735.1_GRCr8.cpgIslandExt.bb

    track cpgIslandExtUnmasked
    parent cpgIslands on
    shortLabel Unmasked CpG
    longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 2
    bigDataUrl bbi/GCF_036323735.1_GRCr8.cpgIslandExtUnmasked.bb

track windowMasker
shortLabel WM + SDust
longLabel Genomic Intervals Masked by WindowMasker + SDust
group varRep
visibility dense
type bigBed 3
bigDataUrl bbi/GCF_036323735.1_GRCr8.windowMasker.bb
html html/GCF_036323735.1_GRCr8.windowMasker

track allGaps
shortLabel All Gaps
longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps
group map
visibility hide
type bigBed 3
bigDataUrl bbi/GCF_036323735.1_GRCr8.allGaps.bb
html html/GCF_036323735.1_GRCr8.allGaps

track augustus
shortLabel Augustus
longLabel Augustus Gene Predictions
group genes
visibility dense
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_036323735.1_GRCr8.augustus.bb
html html/GCF_036323735.1_GRCr8.augustus

track xenoRefGene
shortLabel RefSeq mRNAs
longLabel RefSeq mRNAs mapped to this assembly
group rna
visibility pack
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_036323735.1_GRCr8.xenoRefGene.bb
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
labelFields name,geneName,geneName2
defaultLabelFields geneName
searchIndex name
searchTrix ixIxx/GCF_036323735.1_GRCr8.xenoRefGene.ix
html html/GCF_036323735.1_GRCr8.xenoRefGene

track GCF_036323735.1_GRCr8ChainNet
compositeTrack on
shortLabel Chain/Net
longLabel Chain alignments to target sequence: GCF_036323735.1_GRCr8
subGroup1 view Views chain=Chains synten=Syntenic rbest=Reciprocal_best liftover=Lift_over align=Alignment
subGroup2 species Assembly s000=rn6 s001=mm10 s002=hg19
subGroup3 chainType chain_type c00=chain c01=syntenic c02=reciprocal_best c03=lift_over c04=chain_align c05=syntenic_align c06=reciprocal_align c07=lift_over_align
dragAndDrop subTracks
visibility hide
group compGeno
color 0,0,0
altColor 255,255,0
type bed 3
chainLinearGap loose
chainMinScore 5000
dimensions dimensionX=chainType dimensionY=species
sortOrder species=+ view=+ chainType=+
configurable on
html html/GCF_036323735.1_GRCr8.chainNet

    track GCF_036323735.1_GRCr8ChainNetViewchain
    shortLabel Chains
    view chain
    visibility dense
    parent GCF_036323735.1_GRCr8ChainNet
    spectrum on

    track GCF_036323735.1_GRCr8ChainNetViewSynTen
    shortLabel Syntenic
    view synten
    visibility hide
    parent GCF_036323735.1_GRCr8ChainNet
    spectrum on

    track GCF_036323735.1_GRCr8ChainNetViewRBest
    shortLabel Reciprocal best
    view rbest
    visibility hide
    parent GCF_036323735.1_GRCr8ChainNet
    spectrum on

    track GCF_036323735.1_GRCr8ChainNetViewLiftOver
    shortLabel Lift over
    view liftover
    visibility hide
    parent GCF_036323735.1_GRCr8ChainNet
    spectrum on

        track chainRn6
        parent GCF_036323735.1_GRCr8ChainNetViewchain on
        subGroups view=chain species=s000 chainType=c00
        shortLabel Rat/rn6 Chain
        longLabel Rat/rn6/rn6 (Jul. 2014) Chained Alignments
        type bigChain rn6
        bigDataUrl bbi/GCF_036323735.1_GRCr8.chainRn6.bb
        linkDataUrl bbi/GCF_036323735.1_GRCr8.chainRn6Link.bb
        otherDb rn6
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 2.543

        track chainSynRn6
        parent GCF_036323735.1_GRCr8ChainNetViewSynTen off
        subGroups view=synten species=s000 chainType=c01
        shortLabel Rat/rn6 synChain
        longLabel Rat/rn6/rn6 (Jul. 2014) Chained Alignments
        type bigChain rn6
        bigDataUrl bbi/GCF_036323735.1_GRCr8.chainSynRn6.bb
        linkDataUrl bbi/GCF_036323735.1_GRCr8.chainSynRn6Link.bb
        otherDb rn6
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 2.543

        track chainRBestRn6
        parent GCF_036323735.1_GRCr8ChainNetViewRBest off
        subGroups view=rbest species=s000 chainType=c02
        shortLabel Rat/rn6 rbChain
        longLabel Rat/rn6/rn6 (Jul. 2014) Chained Alignments
        type bigChain rn6
        bigDataUrl bbi/GCF_036323735.1_GRCr8.chainRBestRn6.bb
        linkDataUrl bbi/GCF_036323735.1_GRCr8.chainRBestRn6Link.bb
        otherDb rn6
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 2.543

        track chainLiftOverRn6
        parent GCF_036323735.1_GRCr8ChainNetViewLiftOver off
        subGroups view=liftover species=s000 chainType=c03
        shortLabel Rat/rn6 loChain
        longLabel Rat/rn6/rn6 (Jul. 2014) Chained Alignments
        type bigChain rn6
        bigDataUrl bbi/GCF_036323735.1_GRCr8.chainLiftOverRn6.bb
        linkDataUrl bbi/GCF_036323735.1_GRCr8.chainLiftOverRn6Link.bb
        otherDb rn6
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 2.543

        track chainMm10
        parent GCF_036323735.1_GRCr8ChainNetViewchain off
        subGroups view=chain species=s001 chainType=c00
        shortLabel Mouse/mm10 Chain
        longLabel Mouse/mm10/mm10 (Dec. 2011) Chained Alignments
        type bigChain mm10
        bigDataUrl bbi/GCF_036323735.1_GRCr8.chainMm10.bb
        linkDataUrl bbi/GCF_036323735.1_GRCr8.chainMm10Link.bb
        otherDb mm10
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 30.636

        track chainSynMm10
        parent GCF_036323735.1_GRCr8ChainNetViewSynTen off
        subGroups view=synten species=s001 chainType=c01
        shortLabel Mouse/mm10 synChain
        longLabel Mouse/mm10/mm10 (Dec. 2011) Chained Alignments
        type bigChain mm10
        bigDataUrl bbi/GCF_036323735.1_GRCr8.chainSynMm10.bb
        linkDataUrl bbi/GCF_036323735.1_GRCr8.chainSynMm10Link.bb
        otherDb mm10
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 30.636

        track chainRBestMm10
        parent GCF_036323735.1_GRCr8ChainNetViewRBest off
        subGroups view=rbest species=s001 chainType=c02
        shortLabel Mouse/mm10 rbChain
        longLabel Mouse/mm10/mm10 (Dec. 2011) Chained Alignments
        type bigChain mm10
        bigDataUrl bbi/GCF_036323735.1_GRCr8.chainRBestMm10.bb
        linkDataUrl bbi/GCF_036323735.1_GRCr8.chainRBestMm10Link.bb
        otherDb mm10
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 30.636

        track chainLiftOverMm10
        parent GCF_036323735.1_GRCr8ChainNetViewLiftOver off
        subGroups view=liftover species=s001 chainType=c03
        shortLabel Mouse/mm10 loChain
        longLabel Mouse/mm10/mm10 (Dec. 2011) Chained Alignments
        type bigChain mm10
        bigDataUrl bbi/GCF_036323735.1_GRCr8.chainLiftOverMm10.bb
        linkDataUrl bbi/GCF_036323735.1_GRCr8.chainLiftOverMm10Link.bb
        otherDb mm10
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 30.636

        track chainHg19
        parent GCF_036323735.1_GRCr8ChainNetViewchain off
        subGroups view=chain species=s002 chainType=c00
        shortLabel Human/hg19 Chain
        longLabel Human/hg19/hg19 (Feb. 2009) Chained Alignments
        type bigChain hg19
        bigDataUrl bbi/GCF_036323735.1_GRCr8.chainHg19.bb
        linkDataUrl bbi/GCF_036323735.1_GRCr8.chainHg19Link.bb
        otherDb hg19
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 66.710

        track chainSynHg19
        parent GCF_036323735.1_GRCr8ChainNetViewSynTen off
        subGroups view=synten species=s002 chainType=c01
        shortLabel Human/hg19 synChain
        longLabel Human/hg19/hg19 (Feb. 2009) Chained Alignments
        type bigChain hg19
        bigDataUrl bbi/GCF_036323735.1_GRCr8.chainSynHg19.bb
        linkDataUrl bbi/GCF_036323735.1_GRCr8.chainSynHg19Link.bb
        otherDb hg19
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 66.710

        track chainRBestHg19
        parent GCF_036323735.1_GRCr8ChainNetViewRBest off
        subGroups view=rbest species=s002 chainType=c02
        shortLabel Human/hg19 rbChain
        longLabel Human/hg19/hg19 (Feb. 2009) Chained Alignments
        type bigChain hg19
        bigDataUrl bbi/GCF_036323735.1_GRCr8.chainRBestHg19.bb
        linkDataUrl bbi/GCF_036323735.1_GRCr8.chainRBestHg19Link.bb
        otherDb hg19
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 66.710

        track chainLiftOverHg19
        parent GCF_036323735.1_GRCr8ChainNetViewLiftOver off
        subGroups view=liftover species=s002 chainType=c03
        shortLabel Human/hg19 loChain
        longLabel Human/hg19/hg19 (Feb. 2009) Chained Alignments
        type bigChain hg19
        bigDataUrl bbi/GCF_036323735.1_GRCr8.chainLiftOverHg19.bb
        linkDataUrl bbi/GCF_036323735.1_GRCr8.chainLiftOverHg19Link.bb
        otherDb hg19
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 66.710

    track GCF_036323735.1_GRCr8MafNetViewnet
    shortLabel Nets
    view align
    visibility hide
    parent GCF_036323735.1_GRCr8ChainNet

        track netRn6
        parent GCF_036323735.1_GRCr8MafNetViewnet off
        subGroups view=align species=s000 chainType=c04
        shortLabel Rat/rn6 mafNet
        longLabel Rat/rn6/rn6 (Jul. 2014) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_036323735.1_GRCr8.rn6.net.bb
        summary bbi/GCF_036323735.1_GRCr8.rn6.net.summary.bb
        speciesOrder rn6
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 2.543

        track synNetRn6
        parent GCF_036323735.1_GRCr8MafNetViewnet off
        subGroups view=align species=s000 chainType=c05
        shortLabel Rat/rn6 synNet
        longLabel Rat/rn6/rn6 (Jul. 2014) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_036323735.1_GRCr8.rn6.synNet.bb
        summary bbi/GCF_036323735.1_GRCr8.rn6.synNet.summary.bb
        speciesOrder rn6
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 2.543

        track rbestNetRn6
        parent GCF_036323735.1_GRCr8MafNetViewnet off
        subGroups view=align species=s000 chainType=c06
        shortLabel Rat/rn6 rbestNet
        longLabel Rat/rn6/rn6 (Jul. 2014) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_036323735.1_GRCr8.rn6.rbestNet.bb
        summary bbi/GCF_036323735.1_GRCr8.rn6.rbestNet.summary.bb
        speciesOrder rn6
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 2.543

        track netMm10
        parent GCF_036323735.1_GRCr8MafNetViewnet off
        subGroups view=align species=s001 chainType=c04
        shortLabel Mouse/mm10 mafNet
        longLabel Mouse/mm10/mm10 (Dec. 2011) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_036323735.1_GRCr8.mm10.net.bb
        summary bbi/GCF_036323735.1_GRCr8.mm10.net.summary.bb
        speciesOrder mm10
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 30.636

        track synNetMm10
        parent GCF_036323735.1_GRCr8MafNetViewnet off
        subGroups view=align species=s001 chainType=c05
        shortLabel Mouse/mm10 synNet
        longLabel Mouse/mm10/mm10 (Dec. 2011) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_036323735.1_GRCr8.mm10.synNet.bb
        summary bbi/GCF_036323735.1_GRCr8.mm10.synNet.summary.bb
        speciesOrder mm10
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 30.636

        track rbestNetMm10
        parent GCF_036323735.1_GRCr8MafNetViewnet off
        subGroups view=align species=s001 chainType=c06
        shortLabel Mouse/mm10 rbestNet
        longLabel Mouse/mm10/mm10 (Dec. 2011) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_036323735.1_GRCr8.mm10.rbestNet.bb
        summary bbi/GCF_036323735.1_GRCr8.mm10.rbestNet.summary.bb
        speciesOrder mm10
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 30.636

        track netHg19
        parent GCF_036323735.1_GRCr8MafNetViewnet off
        subGroups view=align species=s002 chainType=c04
        shortLabel Human/hg19 mafNet
        longLabel Human/hg19/hg19 (Feb. 2009) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_036323735.1_GRCr8.hg19.net.bb
        summary bbi/GCF_036323735.1_GRCr8.hg19.net.summary.bb
        speciesOrder hg19
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 66.710

        track synNetHg19
        parent GCF_036323735.1_GRCr8MafNetViewnet off
        subGroups view=align species=s002 chainType=c05
        shortLabel Human/hg19 synNet
        longLabel Human/hg19/hg19 (Feb. 2009) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_036323735.1_GRCr8.hg19.synNet.bb
        summary bbi/GCF_036323735.1_GRCr8.hg19.synNet.summary.bb
        speciesOrder hg19
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 66.710

        track rbestNetHg19
        parent GCF_036323735.1_GRCr8MafNetViewnet off
        subGroups view=align species=s002 chainType=c06
        shortLabel Human/hg19 rbestNet
        longLabel Human/hg19/hg19 (Feb. 2009) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_036323735.1_GRCr8.hg19.rbestNet.bb
        summary bbi/GCF_036323735.1_GRCr8.hg19.rbestNet.summary.bb
        speciesOrder hg19
        html html/GCF_036323735.1_GRCr8.chainNet
        priority 66.710