# Assembly name: Coffea Arabica ET-39 HiFi # Organism name: Coffea arabica (coffee) # Infraspecific name: cultivar=ET-39 # Taxid: 13443 # BioSample: SAMN38777241 # BioProject: PRJNA698600 # Submitter: Coffee Consortium # Date: 2024-02-23 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAZHGF01 # Assembly method: HiFiasm v. 2023-01-20 # Expected final version: yes # Genome coverage: 40.0x # Sequencing technology: Illumina NextSeq; PacBio Sequel # RefSeq category: Reference Genome # GenBank assembly accession: GCA_036785885.1 # RefSeq assembly accession: GCF_036785885.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_036785915.1 GCF_036785915.1 Primary Assembly ## GCF_003833365.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Cara001_chrA_sgCC assembled-molecule 1c Chromosome CM071891.1 = NC_092310.1 Primary Assembly 59034463 na Cara002_chrA_sgEE assembled-molecule 1e Chromosome CM071892.1 = NC_092311.1 Primary Assembly 57716770 na Cara003_chrB_sgCC assembled-molecule 2c Chromosome CM071893.1 = NC_092312.1 Primary Assembly 76906396 na Cara004_chrB_sgEE assembled-molecule 2e Chromosome CM071894.1 = NC_092313.1 Primary Assembly 77301657 na Cara005_chrC_sgCC assembled-molecule 3c Chromosome CM071895.1 = NC_092314.1 Primary Assembly 44587295 na Cara006_chrC_sgEE assembled-molecule 3e Chromosome CM071896.1 = NC_092315.1 Primary Assembly 49228674 na Cara007_chrD_sgCC assembled-molecule 4c Chromosome CM071897.1 = NC_092316.1 Primary Assembly 52323663 na Cara008_chrD_sgEE assembled-molecule 4e Chromosome CM071898.1 = NC_092317.1 Primary Assembly 48754064 na Cara010_chrE_sgEE assembled-molecule 5e Chromosome CM071899.1 = NC_092318.1 Primary Assembly 55030746 na Cara009_chrE_sgCC assembled-molecule 5c Chromosome CM071900.1 = NC_092319.1 Primary Assembly 49172495 na Cara011_chrF_sgCC assembled-molecule 6c Chromosome CM071901.1 = NC_092320.1 Primary Assembly 63716479 na Cara012_chrF_sgEE assembled-molecule 6e Chromosome CM071902.1 = NC_092321.1 Primary Assembly 63214365 na Cara013_chrG_sgCC assembled-molecule 7c Chromosome CM071903.1 = NC_092322.1 Primary Assembly 40515400 na Cara014_chrG_sgEE assembled-molecule 7e Chromosome CM071904.1 = NC_092323.1 Primary Assembly 50646195 na Cara016_chrH_sgEE assembled-molecule 8e Chromosome CM071905.1 = NC_092324.1 Primary Assembly 53737150 na Cara015_chrH_sgCC assembled-molecule 8c Chromosome CM071906.1 = NC_092325.1 Primary Assembly 46623164 na Cara017_chrI_sgCC assembled-molecule 9c Chromosome CM071907.1 = NC_092326.1 Primary Assembly 44254144 na Cara018_chrI_sgEE assembled-molecule 9e Chromosome CM071908.1 = NC_092327.1 Primary Assembly 41449412 na Cara020_chrJ_sgEE assembled-molecule 10e Chromosome CM071909.1 = NC_092328.1 Primary Assembly 48872521 na Cara019_chrJ_sgCC assembled-molecule 10c Chromosome CM071910.1 = NC_092329.1 Primary Assembly 54177763 na Cara021_chrK_sgCC assembled-molecule 11c Chromosome CM071911.1 = NC_092330.1 Primary Assembly 45802622 na Cara022_chrK_sgEE_A assembled-molecule 11e Chromosome CM071912.1 = NC_092331.1 Primary Assembly 62661540 na ptg000002l unplaced-scaffold na na JAZHGF010000023.1 = NW_027266152.1 Primary Assembly 27834 na ptg000003l unplaced-scaffold na na JAZHGF010000024.1 = NW_027266153.1 Primary Assembly 85510 na ptg000005l unplaced-scaffold na na JAZHGF010000025.1 = NW_027266154.1 Primary Assembly 11286 na ptg000006l unplaced-scaffold na na JAZHGF010000026.1 = NW_027266155.1 Primary Assembly 165930 na ptg000007l unplaced-scaffold na na JAZHGF010000027.1 = NW_027266156.1 Primary Assembly 72139 na ptg000008l unplaced-scaffold na na JAZHGF010000028.1 = NW_027266157.1 Primary Assembly 88571 na ptg000009l unplaced-scaffold na na JAZHGF010000029.1 = NW_027266158.1 Primary Assembly 85180 na ptg000010l unplaced-scaffold na na JAZHGF010000030.1 = NW_027266159.1 Primary Assembly 83483 na ptg000011l unplaced-scaffold na na JAZHGF010000031.1 = NW_027266160.1 Primary Assembly 106409 na ptg000012l unplaced-scaffold na na JAZHGF010000032.1 = NW_027266161.1 Primary Assembly 59250 na ptg000014l unplaced-scaffold na na JAZHGF010000033.1 = NW_027266162.1 Primary Assembly 160555 na ptg000015l unplaced-scaffold na na JAZHGF010000034.1 = NW_027266163.1 Primary Assembly 83150 na ptg000016l unplaced-scaffold na na JAZHGF010000035.1 = NW_027266164.1 Primary Assembly 86285 na ptg000017l unplaced-scaffold na na JAZHGF010000036.1 = NW_027266165.1 Primary Assembly 81071 na ptg000018l unplaced-scaffold na na JAZHGF010000037.1 = NW_027266166.1 Primary Assembly 10235 na ptg000019l unplaced-scaffold na na JAZHGF010000038.1 = NW_027266167.1 Primary Assembly 84827 na ptg000020l unplaced-scaffold na na JAZHGF010000039.1 = NW_027266168.1 Primary Assembly 20037 na ptg000021l unplaced-scaffold na na JAZHGF010000040.1 = NW_027266169.1 Primary Assembly 51748 na ptg000022l unplaced-scaffold na na JAZHGF010000041.1 = NW_027266170.1 Primary Assembly 6834 na ptg000023l unplaced-scaffold na na JAZHGF010000042.1 = NW_027266171.1 Primary Assembly 137395 na ptg000024l unplaced-scaffold na na JAZHGF010000043.1 = NW_027266172.1 Primary Assembly 81056 na ptg000025l unplaced-scaffold na na JAZHGF010000044.1 = NW_027266173.1 Primary Assembly 88264 na ptg000026l unplaced-scaffold na na JAZHGF010000045.1 = NW_027266174.1 Primary Assembly 25189 na ptg000027l unplaced-scaffold na na JAZHGF010000046.1 = NW_027266175.1 Primary Assembly 51392 na ptg000028l unplaced-scaffold na na JAZHGF010000047.1 = NW_027266176.1 Primary Assembly 114993 na ptg000029l unplaced-scaffold na na JAZHGF010000048.1 = NW_027266177.1 Primary Assembly 25971 na ptg000030l unplaced-scaffold na na JAZHGF010000049.1 = NW_027266178.1 Primary Assembly 82386 na ptg000031l unplaced-scaffold na na JAZHGF010000050.1 = NW_027266179.1 Primary Assembly 149956 na ptg000032l unplaced-scaffold na na JAZHGF010000051.1 = NW_027266180.1 Primary Assembly 98811 na ptg000033l unplaced-scaffold na na JAZHGF010000052.1 = NW_027266181.1 Primary Assembly 34951 na ptg000034l unplaced-scaffold na na JAZHGF010000053.1 = NW_027266182.1 Primary Assembly 18777 na ptg000035l unplaced-scaffold na na JAZHGF010000054.1 = NW_027266183.1 Primary Assembly 97437 na ptg000036l unplaced-scaffold na na JAZHGF010000055.1 = NW_027266184.1 Primary Assembly 50892 na ptg000037l unplaced-scaffold na na JAZHGF010000056.1 = NW_027266185.1 Primary Assembly 45501 na ptg000038l unplaced-scaffold na na JAZHGF010000057.1 = NW_027266186.1 Primary Assembly 92025 na ptg000039l unplaced-scaffold na na JAZHGF010000058.1 = NW_027266187.1 Primary Assembly 101479 na ptg000040l unplaced-scaffold na na JAZHGF010000059.1 = NW_027266188.1 Primary Assembly 170650 na ptg000042l unplaced-scaffold na na JAZHGF010000060.1 = NW_027266189.1 Primary Assembly 35175 na ptg000043l unplaced-scaffold na na JAZHGF010000061.1 = NW_027266190.1 Primary Assembly 56500 na ptg000044l unplaced-scaffold na na JAZHGF010000062.1 = NW_027266191.1 Primary Assembly 23128 na ptg000045l unplaced-scaffold na na JAZHGF010000063.1 = NW_027266192.1 Primary Assembly 36459 na ptg000046l unplaced-scaffold na na JAZHGF010000064.1 = NW_027266193.1 Primary Assembly 54609 na ptg000047l unplaced-scaffold na na JAZHGF010000065.1 = NW_027266194.1 Primary Assembly 21013 na ptg000048l unplaced-scaffold na na JAZHGF010000066.1 = NW_027266195.1 Primary Assembly 65727 na ptg000049l unplaced-scaffold na na JAZHGF010000067.1 = NW_027266196.1 Primary Assembly 26852 na ptg000050l unplaced-scaffold na na JAZHGF010000068.1 = NW_027266197.1 Primary Assembly 32264 na ptg000051l unplaced-scaffold na na JAZHGF010000069.1 = NW_027266198.1 Primary Assembly 14337 na ptg000053l unplaced-scaffold na na JAZHGF010000070.1 = NW_027266199.1 Primary Assembly 67567 na ptg000054l unplaced-scaffold na na JAZHGF010000071.1 = NW_027266200.1 Primary Assembly 160454 na ptg000055l unplaced-scaffold na na JAZHGF010000072.1 = NW_027266201.1 Primary Assembly 84315 na ptg000056l unplaced-scaffold na na JAZHGF010000073.1 = NW_027266202.1 Primary Assembly 67244 na ptg000057l unplaced-scaffold na na JAZHGF010000074.1 = NW_027266203.1 Primary Assembly 25458 na ptg000058l unplaced-scaffold na na JAZHGF010000075.1 = NW_027266204.1 Primary Assembly 39518 na ptg000059l unplaced-scaffold na na JAZHGF010000076.1 = NW_027266205.1 Primary Assembly 50354 na ptg000060l unplaced-scaffold na na JAZHGF010000077.1 = NW_027266206.1 Primary Assembly 38848 na ptg000061l unplaced-scaffold na na JAZHGF010000078.1 = NW_027266207.1 Primary Assembly 95218 na ptg000062l unplaced-scaffold na na JAZHGF010000079.1 = NW_027266208.1 Primary Assembly 68090 na ptg000063l unplaced-scaffold na na JAZHGF010000080.1 = NW_027266209.1 Primary Assembly 135785 na ptg000064l unplaced-scaffold na na JAZHGF010000081.1 = NW_027266210.1 Primary Assembly 51633 na ptg000065l unplaced-scaffold na na JAZHGF010000082.1 = NW_027266211.1 Primary Assembly 19557 na ptg000066l unplaced-scaffold na na JAZHGF010000083.1 = NW_027266212.1 Primary Assembly 71401 na ptg000067l unplaced-scaffold na na JAZHGF010000084.1 = NW_027266213.1 Primary Assembly 69457 na ptg000070l unplaced-scaffold na na JAZHGF010000085.1 = NW_027266214.1 Primary Assembly 24638 na ptg000071l unplaced-scaffold na na JAZHGF010000086.1 = NW_027266215.1 Primary Assembly 6964 na ptg000072l unplaced-scaffold na na JAZHGF010000087.1 = NW_027266216.1 Primary Assembly 36710 na ptg000073l unplaced-scaffold na na JAZHGF010000088.1 = NW_027266217.1 Primary Assembly 18858 na ptg000074l unplaced-scaffold na na JAZHGF010000089.1 = NW_027266218.1 Primary Assembly 24221 na ptg000075l unplaced-scaffold na na JAZHGF010000090.1 = NW_027266219.1 Primary Assembly 12882 na ptg000076l unplaced-scaffold na na JAZHGF010000091.1 = NW_027266220.1 Primary Assembly 21154 na ptg000077l unplaced-scaffold na na JAZHGF010000092.1 = NW_027266221.1 Primary Assembly 64073 na ptg000078l unplaced-scaffold na na JAZHGF010000093.1 = NW_027266222.1 Primary Assembly 51569 na ptg000080l unplaced-scaffold na na JAZHGF010000094.1 = NW_027266223.1 Primary Assembly 23531 na ptg000081l unplaced-scaffold na na JAZHGF010000095.1 = NW_027266224.1 Primary Assembly 48698 na ptg000082l unplaced-scaffold na na JAZHGF010000096.1 = NW_027266225.1 Primary Assembly 18336 na ptg000083l unplaced-scaffold na na JAZHGF010000097.1 = NW_027266226.1 Primary Assembly 68777 na ptg000084l unplaced-scaffold na na JAZHGF010000098.1 = NW_027266227.1 Primary Assembly 18692 na ptg000085l unplaced-scaffold na na JAZHGF010000099.1 = NW_027266228.1 Primary Assembly 7556 na ptg000086l unplaced-scaffold na na JAZHGF010000100.1 = NW_027266229.1 Primary Assembly 8604 na ptg000087l unplaced-scaffold na na JAZHGF010000101.1 = NW_027266230.1 Primary Assembly 77378 na ptg000089l unplaced-scaffold na na JAZHGF010000102.1 = NW_027266231.1 Primary Assembly 36398 na ptg000090l unplaced-scaffold na na JAZHGF010000103.1 = NW_027266232.1 Primary Assembly 17465 na ptg000091l unplaced-scaffold na na JAZHGF010000104.1 = NW_027266233.1 Primary Assembly 17172 na ptg000092l unplaced-scaffold na na JAZHGF010000105.1 = NW_027266234.1 Primary Assembly 62221 na ptg000094l unplaced-scaffold na na JAZHGF010000106.1 = NW_027266235.1 Primary Assembly 19583 na ptg000095l unplaced-scaffold na na JAZHGF010000107.1 = NW_027266236.1 Primary Assembly 12334 na ptg000096l unplaced-scaffold na na JAZHGF010000108.1 = NW_027266237.1 Primary Assembly 29992 na ptg000097l unplaced-scaffold na na JAZHGF010000109.1 = NW_027266238.1 Primary Assembly 29413 na ptg000098l unplaced-scaffold na na JAZHGF010000110.1 = NW_027266239.1 Primary Assembly 43474 na ptg000099l unplaced-scaffold na na JAZHGF010000111.1 = NW_027266240.1 Primary Assembly 20665 na ptg000100l unplaced-scaffold na na JAZHGF010000112.1 = NW_027266241.1 Primary Assembly 25916 na ptg000101l unplaced-scaffold na na JAZHGF010000113.1 = NW_027266242.1 Primary Assembly 16735 na ptg000103l unplaced-scaffold na na JAZHGF010000114.1 = NW_027266243.1 Primary Assembly 35727 na ptg000104l unplaced-scaffold na na JAZHGF010000115.1 = NW_027266244.1 Primary Assembly 18285 na ptg000105l unplaced-scaffold na na JAZHGF010000116.1 = NW_027266245.1 Primary Assembly 40427 na ptg000106l unplaced-scaffold na na JAZHGF010000117.1 = NW_027266246.1 Primary Assembly 60304 na ptg000107l unplaced-scaffold na na JAZHGF010000118.1 = NW_027266247.1 Primary Assembly 12746 na ptg000108l unplaced-scaffold na na JAZHGF010000119.1 = NW_027266248.1 Primary Assembly 20808 na ptg000109l unplaced-scaffold na na JAZHGF010000120.1 = NW_027266249.1 Primary Assembly 9122 na ptg000110l unplaced-scaffold na na JAZHGF010000121.1 = NW_027266250.1 Primary Assembly 8768 na ptg000111l unplaced-scaffold na na JAZHGF010000122.1 = NW_027266251.1 Primary Assembly 9360 na ptg000112l unplaced-scaffold na na JAZHGF010000123.1 = NW_027266252.1 Primary Assembly 31503 na ptg000114l unplaced-scaffold na na JAZHGF010000124.1 = NW_027266253.1 Primary Assembly 41413 na ptg000115l unplaced-scaffold na na JAZHGF010000125.1 = NW_027266254.1 Primary Assembly 17512 na ptg000116l unplaced-scaffold na na JAZHGF010000126.1 = NW_027266255.1 Primary Assembly 17800 na ptg000118l unplaced-scaffold na na JAZHGF010000127.1 = NW_027266256.1 Primary Assembly 8647 na ptg000119l unplaced-scaffold na na JAZHGF010000128.1 = NW_027266257.1 Primary Assembly 19051 na ptg000120l unplaced-scaffold na na JAZHGF010000129.1 = NW_027266258.1 Primary Assembly 11300 na ptg000121l unplaced-scaffold na na JAZHGF010000130.1 = NW_027266259.1 Primary Assembly 40430 na ptg000122l unplaced-scaffold na na JAZHGF010000131.1 = NW_027266260.1 Primary Assembly 9552 na ptg000123l unplaced-scaffold na na JAZHGF010000132.1 = NW_027266261.1 Primary Assembly 12784 na ptg000200l unplaced-scaffold na na JAZHGF010000133.1 = NW_027266262.1 Primary Assembly 6868091 na Pltd assembled-molecule Pltd Chloroplast na <> NC_008535.1 non-nuclear 155189 na