# Assembly name: mSacLep1_pri_phased_curated # Organism name: Saccopteryx leptura (lesser sac-winged bat) # Isolate: mSacLep1 # Sex: male # Taxid: 249018 # BioSample: SAMN37390139 # BioProject: PRJNA1017170 # Submitter: Bat1K # Date: 2024-02-26 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAVMPD01 # Assembly method: FALCON v. 1.8.1; FALCON-Unzip v. 1.3.7; Scaff10X v. 4.2; Bionano Solve v. 3.5.1; salsa2 v. 2.2; DipAsm v. 0.1 # Expected final version: yes # Genome coverage: 55x # Sequencing technology: PacBio Sequel; Illumina NovaSeq; Bionano Saphyr # RefSeq category: Reference Genome # GenBank assembly accession: GCA_036850995.1 # RefSeq assembly accession: GCF_036850995.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_036851165.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_036851065.1 GCF_036851065.1 Primary Assembly ## GCF_040448715.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name manual_scaffold_1 assembled-molecule 1 Chromosome CM072134.1 = NC_089503.1 Primary Assembly 392736510 na manual_scaffold_2 assembled-molecule 2 Chromosome CM072135.1 = NC_089504.1 Primary Assembly 386274434 na manual_scaffold_3 assembled-molecule 3 Chromosome CM072136.1 = NC_089505.1 Primary Assembly 372602872 na manual_scaffold_4 assembled-molecule 4 Chromosome CM072137.1 = NC_089506.1 Primary Assembly 224759591 na manual_scaffold_5 assembled-molecule 5 Chromosome CM072138.1 = NC_089507.1 Primary Assembly 221053686 na manual_scaffold_6 assembled-molecule 6 Chromosome CM072139.1 = NC_089508.1 Primary Assembly 196223206 na manual_scaffold_8 assembled-molecule 7 Chromosome CM072140.1 = NC_089509.1 Primary Assembly 121814354 na manual_scaffold_10 assembled-molecule 8 Chromosome CM072141.1 = NC_089510.1 Primary Assembly 98214732 na manual_scaffold_9 assembled-molecule 9 Chromosome CM072142.1 = NC_089511.1 Primary Assembly 96157538 na manual_scaffold_11 assembled-molecule 10 Chromosome CM072143.1 = NC_089512.1 Primary Assembly 82789928 na manual_scaffold_12 assembled-molecule 11 Chromosome CM072144.1 = NC_089513.1 Primary Assembly 81031388 na manual_scaffold_14 assembled-molecule 12 Chromosome CM072145.1 = NC_089514.1 Primary Assembly 58068902 na manual_scaffold_13 assembled-molecule 13 Chromosome CM072146.1 = NC_089515.1 Primary Assembly 57436002 na manual_scaffold_7 assembled-molecule X Chromosome CM072147.1 = NC_089516.1 Primary Assembly 138884575 na manual_scaffold_15 unplaced-scaffold na na JAVMPD010000015.1 = NW_027095697.1 Primary Assembly 4085813 na manual_scaffold_16 unplaced-scaffold na na JAVMPD010000016.1 = NW_027095698.1 Primary Assembly 3387909 na manual_scaffold_17 unplaced-scaffold na na JAVMPD010000017.1 = NW_027095699.1 Primary Assembly 3834565 na manual_scaffold_18 unplaced-scaffold na na JAVMPD010000018.1 = NW_027095700.1 Primary Assembly 3642793 na manual_scaffold_19 unplaced-scaffold na na JAVMPD010000019.1 = NW_027095701.1 Primary Assembly 3010953 na manual_scaffold_20 unplaced-scaffold na na JAVMPD010000020.1 = NW_027095702.1 Primary Assembly 2595188 na manual_scaffold_21 unplaced-scaffold na na JAVMPD010000021.1 = NW_027095703.1 Primary Assembly 2368012 na manual_scaffold_22 unplaced-scaffold na na JAVMPD010000022.1 = NW_027095704.1 Primary Assembly 1417230 na manual_scaffold_23 unplaced-scaffold na na JAVMPD010000023.1 = NW_027095705.1 Primary Assembly 1350997 na manual_scaffold_24 unplaced-scaffold na na JAVMPD010000024.1 = NW_027095706.1 Primary Assembly 1203507 na manual_scaffold_25 unplaced-scaffold na na JAVMPD010000025.1 = NW_027095707.1 Primary Assembly 794144 na manual_scaffold_26 unplaced-scaffold na na JAVMPD010000026.1 = NW_027095708.1 Primary Assembly 914182 na manual_scaffold_27 unplaced-scaffold na na JAVMPD010000027.1 = NW_027095709.1 Primary Assembly 875568 na manual_scaffold_28 unplaced-scaffold na na JAVMPD010000028.1 = NW_027095710.1 Primary Assembly 706602 na manual_scaffold_29 unplaced-scaffold na na JAVMPD010000029.1 = NW_027095711.1 Primary Assembly 817293 na manual_scaffold_30 unplaced-scaffold na na JAVMPD010000030.1 = NW_027095712.1 Primary Assembly 419572 na manual_scaffold_31 unplaced-scaffold na na JAVMPD010000031.1 = NW_027095713.1 Primary Assembly 774618 na manual_scaffold_32 unplaced-scaffold na na JAVMPD010000032.1 = NW_027095714.1 Primary Assembly 381115 na manual_scaffold_33 unplaced-scaffold na na JAVMPD010000033.1 = NW_027095715.1 Primary Assembly 686908 na manual_scaffold_34 unplaced-scaffold na na JAVMPD010000034.1 = NW_027095716.1 Primary Assembly 185125 na manual_scaffold_35 unplaced-scaffold na na JAVMPD010000035.1 = NW_027095717.1 Primary Assembly 637543 na manual_scaffold_36 unplaced-scaffold na na JAVMPD010000036.1 = NW_027095718.1 Primary Assembly 617111 na manual_scaffold_37 unplaced-scaffold na na JAVMPD010000037.1 = NW_027095719.1 Primary Assembly 553648 na manual_scaffold_38 unplaced-scaffold na na JAVMPD010000038.1 = NW_027095720.1 Primary Assembly 146920 na manual_scaffold_39 unplaced-scaffold na na JAVMPD010000039.1 = NW_027095721.1 Primary Assembly 459564 na manual_scaffold_40 unplaced-scaffold na na JAVMPD010000040.1 = NW_027095722.1 Primary Assembly 109072 na manual_scaffold_41 unplaced-scaffold na na JAVMPD010000041.1 = NW_027095723.1 Primary Assembly 437079 na manual_scaffold_42 unplaced-scaffold na na JAVMPD010000042.1 = NW_027095724.1 Primary Assembly 434256 na manual_scaffold_43 unplaced-scaffold na na JAVMPD010000043.1 = NW_027095725.1 Primary Assembly 414138 na manual_scaffold_44 unplaced-scaffold na na JAVMPD010000044.1 = NW_027095726.1 Primary Assembly 389474 na manual_scaffold_45 unplaced-scaffold na na JAVMPD010000045.1 = NW_027095727.1 Primary Assembly 381295 na manual_scaffold_46 unplaced-scaffold na na JAVMPD010000046.1 = NW_027095728.1 Primary Assembly 344923 na manual_scaffold_47 unplaced-scaffold na na JAVMPD010000047.1 = NW_027095729.1 Primary Assembly 343907 na manual_scaffold_48 unplaced-scaffold na na JAVMPD010000048.1 = NW_027095730.1 Primary Assembly 342765 na manual_scaffold_49 unplaced-scaffold na na JAVMPD010000049.1 = NW_027095731.1 Primary Assembly 333112 na manual_scaffold_50 unplaced-scaffold na na JAVMPD010000050.1 = NW_027095732.1 Primary Assembly 308670 na manual_scaffold_51 unplaced-scaffold na na JAVMPD010000051.1 = NW_027095733.1 Primary Assembly 273792 na manual_scaffold_52 unplaced-scaffold na na JAVMPD010000052.1 = NW_027095734.1 Primary Assembly 288353 na manual_scaffold_53 unplaced-scaffold na na JAVMPD010000053.1 = NW_027095735.1 Primary Assembly 281256 na manual_scaffold_54 unplaced-scaffold na na JAVMPD010000054.1 = NW_027095736.1 Primary Assembly 265899 na manual_scaffold_55 unplaced-scaffold na na JAVMPD010000055.1 = NW_027095737.1 Primary Assembly 256651 na manual_scaffold_56 unplaced-scaffold na na JAVMPD010000056.1 = NW_027095738.1 Primary Assembly 243536 na manual_scaffold_57 unplaced-scaffold na na JAVMPD010000057.1 = NW_027095739.1 Primary Assembly 242376 na manual_scaffold_58 unplaced-scaffold na na JAVMPD010000058.1 = NW_027095740.1 Primary Assembly 226032 na manual_scaffold_59 unplaced-scaffold na na JAVMPD010000059.1 = NW_027095741.1 Primary Assembly 224857 na manual_scaffold_60 unplaced-scaffold na na JAVMPD010000060.1 = NW_027095742.1 Primary Assembly 214670 na manual_scaffold_61 unplaced-scaffold na na JAVMPD010000061.1 = NW_027095743.1 Primary Assembly 213637 na manual_scaffold_62 unplaced-scaffold na na JAVMPD010000062.1 = NW_027095744.1 Primary Assembly 201094 na manual_scaffold_63 unplaced-scaffold na na JAVMPD010000063.1 = NW_027095745.1 Primary Assembly 198263 na manual_scaffold_64 unplaced-scaffold na na JAVMPD010000064.1 = NW_027095746.1 Primary Assembly 194749 na manual_scaffold_65 unplaced-scaffold na na JAVMPD010000065.1 = NW_027095747.1 Primary Assembly 183906 na manual_scaffold_66 unplaced-scaffold na na JAVMPD010000066.1 = NW_027095748.1 Primary Assembly 183433 na manual_scaffold_67 unplaced-scaffold na na JAVMPD010000067.1 = NW_027095749.1 Primary Assembly 172677 na manual_scaffold_68 unplaced-scaffold na na JAVMPD010000068.1 = NW_027095750.1 Primary Assembly 156295 na manual_scaffold_69 unplaced-scaffold na na JAVMPD010000069.1 = NW_027095751.1 Primary Assembly 133542 na manual_scaffold_70 unplaced-scaffold na na JAVMPD010000070.1 = NW_027095752.1 Primary Assembly 128363 na manual_scaffold_71 unplaced-scaffold na na JAVMPD010000071.1 = NW_027095753.1 Primary Assembly 120136 na manual_scaffold_73 unplaced-scaffold na na JAVMPD010000072.1 = NW_027095754.1 Primary Assembly 113992 na manual_scaffold_72 unplaced-scaffold na na JAVMPD010000073.1 = NW_027095755.1 Primary Assembly 113838 na manual_scaffold_74 unplaced-scaffold na na JAVMPD010000074.1 = NW_027095756.1 Primary Assembly 113474 na manual_scaffold_75 unplaced-scaffold na na JAVMPD010000075.1 = NW_027095757.1 Primary Assembly 108794 na manual_scaffold_76 unplaced-scaffold na na JAVMPD010000076.1 = NW_027095758.1 Primary Assembly 103242 na manual_scaffold_77 unplaced-scaffold na na JAVMPD010000077.1 = NW_027095759.1 Primary Assembly 102262 na manual_scaffold_78 unplaced-scaffold na na JAVMPD010000078.1 = NW_027095760.1 Primary Assembly 96994 na manual_scaffold_79 unplaced-scaffold na na JAVMPD010000079.1 = NW_027095761.1 Primary Assembly 93473 na manual_scaffold_80 unplaced-scaffold na na JAVMPD010000080.1 = NW_027095762.1 Primary Assembly 93326 na manual_scaffold_81 unplaced-scaffold na na JAVMPD010000081.1 = NW_027095763.1 Primary Assembly 91852 na manual_scaffold_82 unplaced-scaffold na na JAVMPD010000082.1 = NW_027095764.1 Primary Assembly 90592 na manual_scaffold_83 unplaced-scaffold na na JAVMPD010000083.1 = NW_027095765.1 Primary Assembly 86505 na manual_scaffold_84 unplaced-scaffold na na JAVMPD010000084.1 = NW_027095766.1 Primary Assembly 82723 na manual_scaffold_85 unplaced-scaffold na na JAVMPD010000085.1 = NW_027095767.1 Primary Assembly 80707 na manual_scaffold_86 unplaced-scaffold na na JAVMPD010000086.1 = NW_027095768.1 Primary Assembly 78323 na manual_scaffold_87 unplaced-scaffold na na JAVMPD010000087.1 = NW_027095769.1 Primary Assembly 78090 na manual_scaffold_88 unplaced-scaffold na na JAVMPD010000088.1 = NW_027095770.1 Primary Assembly 76206 na manual_scaffold_89 unplaced-scaffold na na JAVMPD010000089.1 = NW_027095771.1 Primary Assembly 73283 na manual_scaffold_90 unplaced-scaffold na na JAVMPD010000090.1 = NW_027095772.1 Primary Assembly 69371 na manual_scaffold_91 unplaced-scaffold na na JAVMPD010000091.1 = NW_027095773.1 Primary Assembly 66410 na manual_scaffold_93 unplaced-scaffold na na JAVMPD010000092.1 = NW_027095774.1 Primary Assembly 66147 na manual_scaffold_92 unplaced-scaffold na na JAVMPD010000093.1 = NW_027095775.1 Primary Assembly 66052 na manual_scaffold_95 unplaced-scaffold na na JAVMPD010000094.1 = NW_027095776.1 Primary Assembly 64938 na manual_scaffold_96 unplaced-scaffold na na JAVMPD010000095.1 = NW_027095777.1 Primary Assembly 62784 na manual_scaffold_97 unplaced-scaffold na na JAVMPD010000096.1 = NW_027095778.1 Primary Assembly 61935 na manual_scaffold_98 unplaced-scaffold na na JAVMPD010000097.1 = NW_027095779.1 Primary Assembly 60598 na manual_scaffold_99 unplaced-scaffold na na JAVMPD010000098.1 = NW_027095780.1 Primary Assembly 59488 na manual_scaffold_101 unplaced-scaffold na na JAVMPD010000099.1 = NW_027095781.1 Primary Assembly 57795 na manual_scaffold_100 unplaced-scaffold na na JAVMPD010000100.1 = NW_027095782.1 Primary Assembly 57490 na manual_scaffold_102 unplaced-scaffold na na JAVMPD010000101.1 = NW_027095783.1 Primary Assembly 55732 na manual_scaffold_103 unplaced-scaffold na na JAVMPD010000102.1 = NW_027095784.1 Primary Assembly 54495 na manual_scaffold_104 unplaced-scaffold na na JAVMPD010000103.1 = NW_027095785.1 Primary Assembly 53953 na manual_scaffold_105 unplaced-scaffold na na JAVMPD010000104.1 = NW_027095786.1 Primary Assembly 53322 na manual_scaffold_106 unplaced-scaffold na na JAVMPD010000105.1 = NW_027095787.1 Primary Assembly 51940 na manual_scaffold_107 unplaced-scaffold na na JAVMPD010000106.1 = NW_027095788.1 Primary Assembly 50198 na manual_scaffold_108 unplaced-scaffold na na JAVMPD010000107.1 = NW_027095789.1 Primary Assembly 48732 na manual_scaffold_109 unplaced-scaffold na na JAVMPD010000108.1 = NW_027095790.1 Primary Assembly 47082 na manual_scaffold_110 unplaced-scaffold na na JAVMPD010000109.1 = NW_027095791.1 Primary Assembly 46661 na manual_scaffold_111 unplaced-scaffold na na JAVMPD010000110.1 = NW_027095792.1 Primary Assembly 44681 na manual_scaffold_112 unplaced-scaffold na na JAVMPD010000111.1 = NW_027095793.1 Primary Assembly 44218 na manual_scaffold_113 unplaced-scaffold na na JAVMPD010000112.1 = NW_027095794.1 Primary Assembly 43246 na manual_scaffold_114 unplaced-scaffold na na JAVMPD010000113.1 = NW_027095795.1 Primary Assembly 43233 na manual_scaffold_115 unplaced-scaffold na na JAVMPD010000114.1 = NW_027095796.1 Primary Assembly 42212 na manual_scaffold_116 unplaced-scaffold na na JAVMPD010000115.1 = NW_027095797.1 Primary Assembly 42020 na manual_scaffold_117 unplaced-scaffold na na JAVMPD010000116.1 = NW_027095798.1 Primary Assembly 41933 na manual_scaffold_118 unplaced-scaffold na na JAVMPD010000117.1 = NW_027095799.1 Primary Assembly 40510 na manual_scaffold_119 unplaced-scaffold na na JAVMPD010000118.1 = NW_027095800.1 Primary Assembly 40292 na manual_scaffold_120 unplaced-scaffold na na JAVMPD010000119.1 = NW_027095801.1 Primary Assembly 40126 na manual_scaffold_121 unplaced-scaffold na na JAVMPD010000120.1 = NW_027095802.1 Primary Assembly 39864 na manual_scaffold_122 unplaced-scaffold na na JAVMPD010000121.1 = NW_027095803.1 Primary Assembly 39836 na manual_scaffold_123 unplaced-scaffold na na JAVMPD010000122.1 = NW_027095804.1 Primary Assembly 38807 na manual_scaffold_124 unplaced-scaffold na na JAVMPD010000123.1 = NW_027095805.1 Primary Assembly 38407 na manual_scaffold_125 unplaced-scaffold na na JAVMPD010000124.1 = NW_027095806.1 Primary Assembly 35838 na manual_scaffold_127 unplaced-scaffold na na JAVMPD010000125.1 = NW_027095807.1 Primary Assembly 35562 na manual_scaffold_126 unplaced-scaffold na na JAVMPD010000126.1 = NW_027095808.1 Primary Assembly 35558 na manual_scaffold_128 unplaced-scaffold na na JAVMPD010000127.1 = NW_027095809.1 Primary Assembly 33152 na manual_scaffold_129 unplaced-scaffold na na JAVMPD010000128.1 = NW_027095810.1 Primary Assembly 32952 na manual_scaffold_130 unplaced-scaffold na na JAVMPD010000129.1 = NW_027095811.1 Primary Assembly 31460 na manual_scaffold_131 unplaced-scaffold na na JAVMPD010000130.1 = NW_027095812.1 Primary Assembly 30670 na manual_scaffold_132 unplaced-scaffold na na JAVMPD010000131.1 = NW_027095813.1 Primary Assembly 30315 na manual_scaffold_133 unplaced-scaffold na na JAVMPD010000132.1 = NW_027095814.1 Primary Assembly 30043 na manual_scaffold_134 unplaced-scaffold na na JAVMPD010000133.1 = NW_027095815.1 Primary Assembly 29640 na manual_scaffold_135 unplaced-scaffold na na JAVMPD010000134.1 = NW_027095816.1 Primary Assembly 29594 na manual_scaffold_136 unplaced-scaffold na na JAVMPD010000135.1 = NW_027095817.1 Primary Assembly 29239 na manual_scaffold_137 unplaced-scaffold na na JAVMPD010000136.1 = NW_027095818.1 Primary Assembly 28620 na manual_scaffold_139 unplaced-scaffold na na JAVMPD010000137.1 = NW_027095819.1 Primary Assembly 28247 na manual_scaffold_141 unplaced-scaffold na na JAVMPD010000138.1 = NW_027095820.1 Primary Assembly 26728 na manual_scaffold_142 unplaced-scaffold na na JAVMPD010000139.1 = NW_027095821.1 Primary Assembly 26254 na manual_scaffold_143 unplaced-scaffold na na JAVMPD010000140.1 = NW_027095822.1 Primary Assembly 24524 na manual_scaffold_144 unplaced-scaffold na na JAVMPD010000141.1 = NW_027095823.1 Primary Assembly 24110 na manual_scaffold_145 unplaced-scaffold na na JAVMPD010000142.1 = NW_027095824.1 Primary Assembly 23084 na manual_scaffold_146 unplaced-scaffold na na JAVMPD010000143.1 = NW_027095825.1 Primary Assembly 23025 na manual_scaffold_147 unplaced-scaffold na na JAVMPD010000144.1 = NW_027095826.1 Primary Assembly 22967 na manual_scaffold_148 unplaced-scaffold na na JAVMPD010000145.1 = NW_027095827.1 Primary Assembly 22560 na manual_scaffold_149 unplaced-scaffold na na JAVMPD010000146.1 = NW_027095828.1 Primary Assembly 21026 na manual_scaffold_150 unplaced-scaffold na na JAVMPD010000147.1 = NW_027095829.1 Primary Assembly 20778 na manual_scaffold_151 unplaced-scaffold na na JAVMPD010000148.1 = NW_027095830.1 Primary Assembly 20717 na manual_scaffold_152 unplaced-scaffold na na JAVMPD010000149.1 = NW_027095831.1 Primary Assembly 20503 na manual_scaffold_153 unplaced-scaffold na na JAVMPD010000150.1 = NW_027095832.1 Primary Assembly 19848 na manual_scaffold_154 unplaced-scaffold na na JAVMPD010000151.1 = NW_027095833.1 Primary Assembly 19700 na manual_scaffold_155 unplaced-scaffold na na JAVMPD010000152.1 = NW_027095834.1 Primary Assembly 18510 na manual_scaffold_156 unplaced-scaffold na na JAVMPD010000153.1 = NW_027095835.1 Primary Assembly 17390 na manual_scaffold_157 unplaced-scaffold na na JAVMPD010000154.1 = NW_027095836.1 Primary Assembly 17266 na manual_scaffold_158 unplaced-scaffold na na JAVMPD010000155.1 = NW_027095837.1 Primary Assembly 16409 na manual_scaffold_159 unplaced-scaffold na na JAVMPD010000156.1 = NW_027095838.1 Primary Assembly 15574 na manual_scaffold_160 unplaced-scaffold na na JAVMPD010000157.1 = NW_027095839.1 Primary Assembly 15023 na manual_scaffold_161 unplaced-scaffold na na JAVMPD010000158.1 = NW_027095840.1 Primary Assembly 14432 na manual_scaffold_162 unplaced-scaffold na na JAVMPD010000159.1 = NW_027095841.1 Primary Assembly 14100 na manual_scaffold_163 unplaced-scaffold na na JAVMPD010000160.1 = NW_027095842.1 Primary Assembly 9721 na manual_scaffold_164 unplaced-scaffold na na JAVMPD010000161.1 = NW_027095843.1 Primary Assembly 8260 na manual_scaffold_165 unplaced-scaffold na na JAVMPD010000162.1 = NW_027095844.1 Primary Assembly 7557 na manual_scaffold_166 unplaced-scaffold na na JAVMPD010000163.1 = NW_027095845.1 Primary Assembly 6386 na manual_scaffold_167 unplaced-scaffold na na JAVMPD010000164.1 = NW_027095846.1 Primary Assembly 5929 na manual_scaffold_168 unplaced-scaffold na na JAVMPD010000165.1 = NW_027095847.1 Primary Assembly 2649 na manual_scaffold_169 unplaced-scaffold na na JAVMPD010000166.1 = NW_027095848.1 Primary Assembly 1344 na manual_scaffold_170 unplaced-scaffold na na JAVMPD010000167.1 = NW_027095849.1 Primary Assembly 938 na MT assembled-molecule MT Mitochondrion na <> NC_036421.1 non-nuclear 16577 na