# Assembly name: ASM3717960v1 # Organism name: Mesorhizobium salmacidum (a-proteobacteria) # Infraspecific name: strain=Ld1326N3 # Taxid: 3015171 # BioSample: SAMN32187524 # BioProject: PRJNA911588 # Submitter: University of Pretoria # Date: 2024-03-15 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JAPYKS01 # Assembly method: SPAdes v. 3.12.0 # Expected final version: yes # Genome coverage: 225x # Sequencing technology: Illumina MiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_037179605.1 # RefSeq assembly accession: GCF_037179605.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_037179615.1 GCF_037179615.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name NODE_1_length_523142_cov_22.404832_pilon unplaced-scaffold na na JAPYKS010000001.1 = NZ_JAPYKS010000001.1 Primary Assembly 523142 na NODE_2_length_383028_cov_22.430967_pilon unplaced-scaffold na na JAPYKS010000002.1 = NZ_JAPYKS010000002.1 Primary Assembly 383028 na NODE_3_length_364231_cov_22.471471_pilon unplaced-scaffold na na JAPYKS010000003.1 = NZ_JAPYKS010000003.1 Primary Assembly 364231 na NODE_4_length_358136_cov_22.699817_pilon unplaced-scaffold na na JAPYKS010000004.1 = NZ_JAPYKS010000004.1 Primary Assembly 358136 na NODE_5_length_320251_cov_22.396496_pilon unplaced-scaffold na na JAPYKS010000005.1 = NZ_JAPYKS010000005.1 Primary Assembly 320251 na NODE_6_length_300274_cov_22.383907_pilon unplaced-scaffold na na JAPYKS010000006.1 = NZ_JAPYKS010000006.1 Primary Assembly 300274 na NODE_7_length_287913_cov_20.656805_pilon unplaced-scaffold na na JAPYKS010000007.1 = NZ_JAPYKS010000007.1 Primary Assembly 287913 na NODE_8_length_243797_cov_22.279490_pilon unplaced-scaffold na na JAPYKS010000008.1 = NZ_JAPYKS010000008.1 Primary Assembly 243797 na NODE_9_length_239301_cov_20.377348_pilon unplaced-scaffold na na JAPYKS010000009.1 = NZ_JAPYKS010000009.1 Primary Assembly 239301 na NODE_10_length_211414_cov_20.624464_pilon unplaced-scaffold na na JAPYKS010000010.1 = NZ_JAPYKS010000010.1 Primary Assembly 211414 na NODE_11_length_204850_cov_20.524248_pilon unplaced-scaffold na na JAPYKS010000011.1 = NZ_JAPYKS010000011.1 Primary Assembly 204850 na NODE_12_length_196986_cov_22.450250_pilon unplaced-scaffold na na JAPYKS010000012.1 = NZ_JAPYKS010000012.1 Primary Assembly 196986 na NODE_13_length_186856_cov_21.620119_pilon unplaced-scaffold na na JAPYKS010000013.1 = NZ_JAPYKS010000013.1 Primary Assembly 186856 na NODE_14_length_177397_cov_23.002036_pilon unplaced-scaffold na na JAPYKS010000014.1 = NZ_JAPYKS010000014.1 Primary Assembly 177397 na NODE_15_length_176339_cov_21.186421_pilon unplaced-scaffold na na JAPYKS010000015.1 = NZ_JAPYKS010000015.1 Primary Assembly 176339 na NODE_16_length_158493_cov_22.699713_pilon unplaced-scaffold na na JAPYKS010000016.1 = NZ_JAPYKS010000016.1 Primary Assembly 158493 na NODE_17_length_155049_cov_21.391410_pilon unplaced-scaffold na na JAPYKS010000017.1 = NZ_JAPYKS010000017.1 Primary Assembly 155049 na NODE_18_length_145500_cov_21.286917_pilon unplaced-scaffold na na JAPYKS010000018.1 = NZ_JAPYKS010000018.1 Primary Assembly 145500 na NODE_19_length_124672_cov_22.263794_pilon unplaced-scaffold na na JAPYKS010000019.1 = NZ_JAPYKS010000019.1 Primary Assembly 124672 na NODE_20_length_121988_cov_16.019390_pilon unplaced-scaffold na na JAPYKS010000020.1 = NZ_JAPYKS010000020.1 Primary Assembly 121988 na NODE_21_length_107276_cov_16.221622_pilon unplaced-scaffold na na JAPYKS010000021.1 = NZ_JAPYKS010000021.1 Primary Assembly 107276 na NODE_22_length_92255_cov_18.307244_pilon unplaced-scaffold na na JAPYKS010000022.1 = NZ_JAPYKS010000022.1 Primary Assembly 92255 na NODE_23_length_87400_cov_23.284762_pilon unplaced-scaffold na na JAPYKS010000023.1 = NZ_JAPYKS010000023.1 Primary Assembly 87400 na NODE_24_length_70444_cov_15.903770_pilon unplaced-scaffold na na JAPYKS010000024.1 = NZ_JAPYKS010000024.1 Primary Assembly 70444 na NODE_25_length_65265_cov_20.088030_pilon unplaced-scaffold na na JAPYKS010000025.1 = NZ_JAPYKS010000025.1 Primary Assembly 65265 na NODE_26_length_59116_cov_20.806622_pilon unplaced-scaffold na na JAPYKS010000026.1 = NZ_JAPYKS010000026.1 Primary Assembly 59116 na NODE_27_length_56731_cov_21.719696_pilon unplaced-scaffold na na JAPYKS010000027.1 = NZ_JAPYKS010000027.1 Primary Assembly 56731 na NODE_28_length_56267_cov_16.982739_pilon unplaced-scaffold na na JAPYKS010000028.1 = NZ_JAPYKS010000028.1 Primary Assembly 56267 na NODE_29_length_48895_cov_15.983082_pilon unplaced-scaffold na na JAPYKS010000029.1 = NZ_JAPYKS010000029.1 Primary Assembly 48895 na NODE_30_length_46901_cov_20.005744_pilon unplaced-scaffold na na JAPYKS010000030.1 = NZ_JAPYKS010000030.1 Primary Assembly 46901 na NODE_31_length_46611_cov_22.616566_pilon unplaced-scaffold na na JAPYKS010000031.1 = NZ_JAPYKS010000031.1 Primary Assembly 46611 na NODE_32_length_44696_cov_19.293938_pilon unplaced-scaffold na na JAPYKS010000032.1 = NZ_JAPYKS010000032.1 Primary Assembly 44696 na NODE_33_length_44539_cov_20.397544_pilon unplaced-scaffold na na JAPYKS010000033.1 = NZ_JAPYKS010000033.1 Primary Assembly 44539 na NODE_34_length_43340_cov_16.330352_pilon unplaced-scaffold na na JAPYKS010000034.1 = NZ_JAPYKS010000034.1 Primary Assembly 43340 na NODE_35_length_41935_cov_22.405933_pilon unplaced-scaffold na na JAPYKS010000035.1 = NZ_JAPYKS010000035.1 Primary Assembly 41935 na NODE_36_length_40584_cov_17.008516_pilon unplaced-scaffold na na JAPYKS010000036.1 = NZ_JAPYKS010000036.1 Primary Assembly 40584 na NODE_37_length_38419_cov_22.297982_pilon unplaced-scaffold na na JAPYKS010000037.1 = NZ_JAPYKS010000037.1 Primary Assembly 38419 na NODE_38_length_36950_cov_20.718403_pilon unplaced-scaffold na na JAPYKS010000038.1 = NZ_JAPYKS010000038.1 Primary Assembly 36950 na NODE_39_length_35603_cov_21.191940_pilon unplaced-scaffold na na JAPYKS010000039.1 = NZ_JAPYKS010000039.1 Primary Assembly 35603 na NODE_40_length_33779_cov_21.431292_pilon unplaced-scaffold na na JAPYKS010000040.1 = NZ_JAPYKS010000040.1 Primary Assembly 33779 na NODE_41_length_32910_cov_19.401352_pilon unplaced-scaffold na na JAPYKS010000041.1 = NZ_JAPYKS010000041.1 Primary Assembly 32910 na NODE_42_length_32889_cov_18.566427_pilon unplaced-scaffold na na JAPYKS010000042.1 = NZ_JAPYKS010000042.1 Primary Assembly 32889 na NODE_43_length_32557_cov_17.307886_pilon unplaced-scaffold na na JAPYKS010000043.1 = NZ_JAPYKS010000043.1 Primary Assembly 32557 na NODE_44_length_30339_cov_22.748381_pilon unplaced-scaffold na na JAPYKS010000044.1 = NZ_JAPYKS010000044.1 Primary Assembly 30339 na NODE_45_length_30176_cov_22.564225_pilon unplaced-scaffold na na JAPYKS010000045.1 = NZ_JAPYKS010000045.1 Primary Assembly 30176 na NODE_46_length_26466_cov_21.446789_pilon unplaced-scaffold na na JAPYKS010000046.1 = NZ_JAPYKS010000046.1 Primary Assembly 26466 na NODE_47_length_26448_cov_12.488797_pilon unplaced-scaffold na na JAPYKS010000047.1 = NZ_JAPYKS010000047.1 Primary Assembly 26448 na NODE_48_length_24791_cov_19.146319_pilon unplaced-scaffold na na JAPYKS010000048.1 = NZ_JAPYKS010000048.1 Primary Assembly 24791 na NODE_49_length_22918_cov_21.494025_pilon unplaced-scaffold na na JAPYKS010000049.1 = NZ_JAPYKS010000049.1 Primary Assembly 22918 na NODE_50_length_21019_cov_18.677248_pilon unplaced-scaffold na na JAPYKS010000050.1 = NZ_JAPYKS010000050.1 Primary Assembly 21019 na NODE_51_length_17061_cov_20.248676_pilon unplaced-scaffold na na JAPYKS010000051.1 = NZ_JAPYKS010000051.1 Primary Assembly 17061 na NODE_52_length_15084_cov_16.386731_pilon unplaced-scaffold na na JAPYKS010000052.1 = NZ_JAPYKS010000052.1 Primary Assembly 15084 na NODE_53_length_14945_cov_20.668684_pilon unplaced-scaffold na na JAPYKS010000053.1 = NZ_JAPYKS010000053.1 Primary Assembly 14945 na NODE_54_length_13320_cov_15.075930_pilon unplaced-scaffold na na JAPYKS010000054.1 = NZ_JAPYKS010000054.1 Primary Assembly 13320 na NODE_55_length_12270_cov_15.335273_pilon unplaced-scaffold na na JAPYKS010000055.1 = NZ_JAPYKS010000055.1 Primary Assembly 12270 na NODE_56_length_12066_cov_18.117299_pilon unplaced-scaffold na na JAPYKS010000056.1 = NZ_JAPYKS010000056.1 Primary Assembly 12066 na NODE_57_length_10565_cov_19.966933_pilon unplaced-scaffold na na JAPYKS010000057.1 = NZ_JAPYKS010000057.1 Primary Assembly 10565 na NODE_58_length_10263_cov_17.715659_pilon unplaced-scaffold na na JAPYKS010000058.1 = NZ_JAPYKS010000058.1 Primary Assembly 10263 na NODE_59_length_8574_cov_13.794543_pilon unplaced-scaffold na na JAPYKS010000059.1 = NZ_JAPYKS010000059.1 Primary Assembly 8574 na NODE_60_length_7515_cov_19.249463_pilon unplaced-scaffold na na JAPYKS010000060.1 = NZ_JAPYKS010000060.1 Primary Assembly 7515 na NODE_61_length_6525_cov_17.965913_pilon unplaced-scaffold na na JAPYKS010000061.1 = NZ_JAPYKS010000061.1 Primary Assembly 6525 na NODE_62_length_4285_cov_15.810394_pilon unplaced-scaffold na na JAPYKS010000062.1 = NZ_JAPYKS010000062.1 Primary Assembly 4285 na NODE_63_length_4111_cov_18.484653_pilon unplaced-scaffold na na JAPYKS010000063.1 = NZ_JAPYKS010000063.1 Primary Assembly 4111 na NODE_64_length_3897_cov_19.833769_pilon unplaced-scaffold na na JAPYKS010000064.1 = NZ_JAPYKS010000064.1 Primary Assembly 3897 na NODE_65_length_3558_cov_17.687124_pilon unplaced-scaffold na na JAPYKS010000065.1 = NZ_JAPYKS010000065.1 Primary Assembly 3558 na NODE_66_length_1974_cov_16.071992_pilon unplaced-scaffold na na JAPYKS010000066.1 = NZ_JAPYKS010000066.1 Primary Assembly 1974 na NODE_67_length_1911_cov_45.562500_pilon unplaced-scaffold na na JAPYKS010000067.1 = NZ_JAPYKS010000067.1 Primary Assembly 1911 na NODE_68_length_1840_cov_47.119276_pilon unplaced-scaffold na na JAPYKS010000068.1 = NZ_JAPYKS010000068.1 Primary Assembly 1840 na NODE_69_length_1712_cov_14.489945_pilon unplaced-scaffold na na JAPYKS010000069.1 = NZ_JAPYKS010000069.1 Primary Assembly 1712 na NODE_70_length_1672_cov_36.735166_pilon unplaced-scaffold na na JAPYKS010000070.1 = NZ_JAPYKS010000070.1 Primary Assembly 1672 na NODE_71_length_1580_cov_22.015905_pilon unplaced-scaffold na na JAPYKS010000071.1 = NZ_JAPYKS010000071.1 Primary Assembly 1580 na NODE_72_length_1455_cov_14.778179_pilon unplaced-scaffold na na JAPYKS010000072.1 = NZ_JAPYKS010000072.1 Primary Assembly 1455 na NODE_73_length_1388_cov_51.790433_pilon unplaced-scaffold na na JAPYKS010000073.1 = NZ_JAPYKS010000073.1 Primary Assembly 1388 na NODE_74_length_1304_cov_21.775345_pilon unplaced-scaffold na na JAPYKS010000074.1 = NZ_JAPYKS010000074.1 Primary Assembly 1304 na NODE_75_length_1162_cov_89.721357_pilon unplaced-scaffold na na JAPYKS010000075.1 = NZ_JAPYKS010000075.1 Primary Assembly 1162 na NODE_76_length_1102_cov_21.245393_pilon unplaced-scaffold na na JAPYKS010000076.1 = NZ_JAPYKS010000076.1 Primary Assembly 1102 na NODE_77_length_1090_cov_18.095191_pilon unplaced-scaffold na na JAPYKS010000077.1 = NZ_JAPYKS010000077.1 Primary Assembly 1090 na NODE_78_length_1053_cov_47.663951_pilon unplaced-scaffold na na JAPYKS010000078.1 = NZ_JAPYKS010000078.1 Primary Assembly 1053 na NODE_79_length_921_cov_25.347059_pilon unplaced-scaffold na na JAPYKS010000079.1 = NZ_JAPYKS010000079.1 Primary Assembly 921 na NODE_80_length_916_cov_51.345562_pilon unplaced-scaffold na na JAPYKS010000080.1 = NZ_JAPYKS010000080.1 Primary Assembly 916 na NODE_81_length_885_cov_34.292383_pilon unplaced-scaffold na na JAPYKS010000081.1 = NZ_JAPYKS010000081.1 Primary Assembly 885 na NODE_82_length_875_cov_39.155473_pilon unplaced-scaffold na na JAPYKS010000082.1 = NZ_JAPYKS010000082.1 Primary Assembly 875 na NODE_83_length_859_cov_125.956853_pilon unplaced-scaffold na na JAPYKS010000083.1 = NZ_JAPYKS010000083.1 Primary Assembly 859 na NODE_84_length_809_cov_39.578591_pilon unplaced-scaffold na na JAPYKS010000084.1 = NZ_JAPYKS010000084.1 Primary Assembly 809 na NODE_85_length_731_cov_43.056061_pilon unplaced-scaffold na na JAPYKS010000085.1 = NZ_JAPYKS010000085.1 Primary Assembly 731 na NODE_86_length_713_cov_49.822430_pilon unplaced-scaffold na na JAPYKS010000086.1 = NZ_JAPYKS010000086.1 Primary Assembly 713 na NODE_87_length_672_cov_41.625624_pilon unplaced-scaffold na na JAPYKS010000087.1 = NZ_JAPYKS010000087.1 Primary Assembly 672 na NODE_88_length_626_cov_20.852252_pilon unplaced-scaffold na na JAPYKS010000088.1 = NZ_JAPYKS010000088.1 Primary Assembly 626 na NODE_89_length_617_cov_56.025641_pilon unplaced-scaffold na na JAPYKS010000089.1 = NZ_JAPYKS010000089.1 Primary Assembly 617 na NODE_90_length_585_cov_26.704280_pilon unplaced-scaffold na na JAPYKS010000090.1 = NZ_JAPYKS010000090.1 Primary Assembly 585 na NODE_91_length_583_cov_103.224609_pilon unplaced-scaffold na na JAPYKS010000091.1 = NZ_JAPYKS010000091.1 Primary Assembly 583 na NODE_92_length_566_cov_36.678788_pilon unplaced-scaffold na na JAPYKS010000092.1 = NZ_JAPYKS010000092.1 Primary Assembly 566 na NODE_93_length_515_cov_15.684685_pilon unplaced-scaffold na na JAPYKS010000093.1 = NZ_JAPYKS010000093.1 Primary Assembly 515 na NODE_94_length_510_cov_47.330296_pilon unplaced-scaffold na na JAPYKS010000094.1 = NZ_JAPYKS010000094.1 Primary Assembly 510 na NODE_95_length_509_cov_36.002283_pilon unplaced-scaffold na na JAPYKS010000095.1 = NZ_JAPYKS010000095.1 Primary Assembly 509 na NODE_96_length_431_cov_20.444444_pilon unplaced-scaffold na na JAPYKS010000096.1 = NZ_JAPYKS010000096.1 Primary Assembly 431 na NODE_97_length_431_cov_18.477778_pilon unplaced-scaffold na na JAPYKS010000097.1 = NZ_JAPYKS010000097.1 Primary Assembly 431 na NODE_98_length_426_cov_23.985915_pilon unplaced-scaffold na na JAPYKS010000098.1 = NZ_JAPYKS010000098.1 Primary Assembly 426 na NODE_99_length_426_cov_22.664789_pilon unplaced-scaffold na na JAPYKS010000099.1 = NZ_JAPYKS010000099.1 Primary Assembly 426 na NODE_100_length_415_cov_45.319767_pilon unplaced-scaffold na na JAPYKS010000100.1 = NZ_JAPYKS010000100.1 Primary Assembly 415 na NODE_101_length_413_cov_31.947368_pilon unplaced-scaffold na na JAPYKS010000101.1 = NZ_JAPYKS010000101.1 Primary Assembly 413 na NODE_102_length_413_cov_21.280702_pilon unplaced-scaffold na na JAPYKS010000102.1 = NZ_JAPYKS010000102.1 Primary Assembly 413 na NODE_103_length_399_cov_25.097561_pilon unplaced-scaffold na na JAPYKS010000103.1 = NZ_JAPYKS010000103.1 Primary Assembly 399 na NODE_104_length_395_cov_44.015432_pilon unplaced-scaffold na na JAPYKS010000104.1 = NZ_JAPYKS010000104.1 Primary Assembly 395 na NODE_105_length_389_cov_16.261006_pilon unplaced-scaffold na na JAPYKS010000105.1 = NZ_JAPYKS010000105.1 Primary Assembly 389 na NODE_106_length_373_cov_16.331126_pilon unplaced-scaffold na na JAPYKS010000106.1 = NZ_JAPYKS010000106.1 Primary Assembly 373 na NODE_107_length_349_cov_30.079137_pilon unplaced-scaffold na na JAPYKS010000107.1 = NZ_JAPYKS010000107.1 Primary Assembly 349 na NODE_108_length_349_cov_23.053957_pilon unplaced-scaffold na na JAPYKS010000108.1 = NZ_JAPYKS010000108.1 Primary Assembly 349 na NODE_109_length_347_cov_61.329710_pilon unplaced-scaffold na na JAPYKS010000109.1 = NZ_JAPYKS010000109.1 Primary Assembly 347 na NODE_110_length_347_cov_30.322464_pilon unplaced-scaffold na na JAPYKS010000110.1 = NZ_JAPYKS010000110.1 Primary Assembly 347 na NODE_111_length_321_cov_26.816000_pilon unplaced-scaffold na na JAPYKS010000111.1 = NZ_JAPYKS010000111.1 Primary Assembly 321 na NODE_112_length_314_cov_23.995885_pilon unplaced-scaffold na na JAPYKS010000112.1 = NZ_JAPYKS010000112.1 Primary Assembly 314 na NODE_113_length_305_cov_22.162393_pilon unplaced-scaffold na na JAPYKS010000113.1 = NZ_JAPYKS010000113.1 Primary Assembly 305 na NODE_114_length_296_cov_35.737778_pilon unplaced-scaffold na na JAPYKS010000114.1 = NZ_JAPYKS010000114.1 Primary Assembly 296 na NODE_115_length_291_cov_30.059091_pilon unplaced-scaffold na na JAPYKS010000115.1 = NZ_JAPYKS010000115.1 Primary Assembly 291 na NODE_116_length_290_cov_17.178082_pilon unplaced-scaffold na na JAPYKS010000116.1 = NZ_JAPYKS010000116.1 Primary Assembly 290 na NODE_117_length_278_cov_37.507246_pilon unplaced-scaffold na na JAPYKS010000117.1 = NZ_JAPYKS010000117.1 Primary Assembly 278 na NODE_118_length_271_cov_50.045000_pilon unplaced-scaffold na na JAPYKS010000118.1 = NZ_JAPYKS010000118.1 Primary Assembly 271 na NODE_119_length_269_cov_52.762626_pilon unplaced-scaffold na na JAPYKS010000119.1 = NZ_JAPYKS010000119.1 Primary Assembly 269 na NODE_120_length_254_cov_479.131148_pilon unplaced-scaffold na na JAPYKS010000120.1 = NZ_JAPYKS010000120.1 Primary Assembly 254 na NODE_121_length_227_cov_18.089744_pilon unplaced-scaffold na na JAPYKS010000121.1 = NZ_JAPYKS010000121.1 Primary Assembly 227 na NODE_122_length_218_cov_40.346939_pilon unplaced-scaffold na na JAPYKS010000122.1 = NZ_JAPYKS010000122.1 Primary Assembly 218 na NODE_123_length_206_cov_36.007407_pilon unplaced-scaffold na na JAPYKS010000123.1 = NZ_JAPYKS010000123.1 Primary Assembly 206 na