# Assembly name: ASM4009626v1 # Organism name: Ruthenibacterium intestinale (firmicutes) # Infraspecific name: strain=CLA-JM-H11 # Taxid: 3133163 # BioSample: SAMN40466807 # BioProject: PRJNA996881 # Submitter: RWTH Aachen University Hospital # Date: 2024-06-07 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JBBMFA01 # Assembly method: SPAdes v. 3.15.5 # Expected final version: yes # Genome coverage: 249x # Sequencing technology: Illumina MiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_040096265.1 # RefSeq assembly accession: GCF_040096265.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_040096275.1 GCF_040096275.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name CLAJMH11_contig_39_length_2995 unplaced-scaffold na na JBBMFA010000001.1 = NZ_JBBMFA010000001.1 Primary Assembly 2995 na CLAJMH11_contig_49_length_1236 unplaced-scaffold na na JBBMFA010000002.1 = NZ_JBBMFA010000002.1 Primary Assembly 1236 na CLAJMH11_contig_50_length_677 unplaced-scaffold na na JBBMFA010000003.1 = NZ_JBBMFA010000003.1 Primary Assembly 677 na CLAJMH11_contig_51_length_572 unplaced-scaffold na na JBBMFA010000004.1 = NZ_JBBMFA010000004.1 Primary Assembly 572 na CLAJMH11_contig_54_length_1304 unplaced-scaffold na na JBBMFA010000005.1 = NZ_JBBMFA010000005.1 Primary Assembly 1304 na CLAJMH11_contig_56_length_541 unplaced-scaffold na na JBBMFA010000006.1 = NZ_JBBMFA010000006.1 Primary Assembly 541 na CLAJMH11_contig_57_length_1670 unplaced-scaffold na na JBBMFA010000007.1 = NZ_JBBMFA010000007.1 Primary Assembly 1670 na CLAJMH11_contig_59_length_1185 unplaced-scaffold na na JBBMFA010000008.1 = NZ_JBBMFA010000008.1 Primary Assembly 1185 na CLAJMH11_contig_61_length_2438 unplaced-scaffold na na JBBMFA010000009.1 = NZ_JBBMFA010000009.1 Primary Assembly 2438 na CLAJMH11_contig_62_length_4859 unplaced-scaffold na na JBBMFA010000010.1 = NZ_JBBMFA010000010.1 Primary Assembly 4859 na CLAJMH11_contig_64_length_6866 unplaced-scaffold na na JBBMFA010000011.1 = NZ_JBBMFA010000011.1 Primary Assembly 6866 na CLAJMH11_contig_65_length_500 unplaced-scaffold na na JBBMFA010000012.1 = NZ_JBBMFA010000012.1 Primary Assembly 500 na CLAJMH11_contig_66_length_4144 unplaced-scaffold na na JBBMFA010000013.1 = NZ_JBBMFA010000013.1 Primary Assembly 4144 na CLAJMH11_contig_69_length_6277 unplaced-scaffold na na JBBMFA010000014.1 = NZ_JBBMFA010000014.1 Primary Assembly 6277 na CLAJMH11_contig_70_length_18305 unplaced-scaffold na na JBBMFA010000015.1 = NZ_JBBMFA010000015.1 Primary Assembly 18305 na CLAJMH11_contig_71_length_1185 unplaced-scaffold na na JBBMFA010000016.1 = NZ_JBBMFA010000016.1 Primary Assembly 1185 na CLAJMH11_contig_72_length_8333 unplaced-scaffold na na JBBMFA010000017.1 = NZ_JBBMFA010000017.1 Primary Assembly 8333 na CLAJMH11_contig_73_length_14628 unplaced-scaffold na na JBBMFA010000018.1 = NZ_JBBMFA010000018.1 Primary Assembly 14628 na CLAJMH11_contig_76_length_2603 unplaced-scaffold na na JBBMFA010000019.1 = NZ_JBBMFA010000019.1 Primary Assembly 2603 na CLAJMH11_contig_77_length_1304 unplaced-scaffold na na JBBMFA010000020.1 = NZ_JBBMFA010000020.1 Primary Assembly 1304 na CLAJMH11_contig_78_length_1357 unplaced-scaffold na na JBBMFA010000021.1 = NZ_JBBMFA010000021.1 Primary Assembly 1357 na CLAJMH11_contig_79_length_25236 unplaced-scaffold na na JBBMFA010000022.1 = NZ_JBBMFA010000022.1 Primary Assembly 25236 na CLAJMH11_contig_80_length_15519 unplaced-scaffold na na JBBMFA010000023.1 = NZ_JBBMFA010000023.1 Primary Assembly 15519 na CLAJMH11_contig_81_length_3527 unplaced-scaffold na na JBBMFA010000024.1 = NZ_JBBMFA010000024.1 Primary Assembly 3527 na CLAJMH11_contig_82_length_3330 unplaced-scaffold na na JBBMFA010000025.1 = NZ_JBBMFA010000025.1 Primary Assembly 3330 na CLAJMH11_contig_83_length_6841 unplaced-scaffold na na JBBMFA010000026.1 = NZ_JBBMFA010000026.1 Primary Assembly 6841 na CLAJMH11_contig_84_length_5571 unplaced-scaffold na na JBBMFA010000027.1 = NZ_JBBMFA010000027.1 Primary Assembly 5571 na CLAJMH11_contig_85_length_2268 unplaced-scaffold na na JBBMFA010000028.1 = NZ_JBBMFA010000028.1 Primary Assembly 2268 na CLAJMH11_contig_86_length_1545 unplaced-scaffold na na JBBMFA010000029.1 = NZ_JBBMFA010000029.1 Primary Assembly 1545 na CLAJMH11_contig_87_length_3140 unplaced-scaffold na na JBBMFA010000030.1 = NZ_JBBMFA010000030.1 Primary Assembly 3140 na CLAJMH11_contig_88_length_14800 unplaced-scaffold na na JBBMFA010000031.1 = NZ_JBBMFA010000031.1 Primary Assembly 14800 na CLAJMH11_contig_89_length_8304 unplaced-scaffold na na JBBMFA010000032.1 = NZ_JBBMFA010000032.1 Primary Assembly 8304 na CLAJMH11_contig_90_length_14434 unplaced-scaffold na na JBBMFA010000033.1 = NZ_JBBMFA010000033.1 Primary Assembly 14434 na CLAJMH11_contig_91_length_35749 unplaced-scaffold na na JBBMFA010000034.1 = NZ_JBBMFA010000034.1 Primary Assembly 35749 na CLAJMH11_contig_92_length_30535 unplaced-scaffold na na JBBMFA010000035.1 = NZ_JBBMFA010000035.1 Primary Assembly 30535 na CLAJMH11_contig_93_length_22662 unplaced-scaffold na na JBBMFA010000036.1 = NZ_JBBMFA010000036.1 Primary Assembly 22662 na CLAJMH11_contig_94_length_33220 unplaced-scaffold na na JBBMFA010000037.1 = NZ_JBBMFA010000037.1 Primary Assembly 33220 na CLAJMH11_contig_95_length_3626 unplaced-scaffold na na JBBMFA010000038.1 = NZ_JBBMFA010000038.1 Primary Assembly 3626 na CLAJMH11_contig_96_length_5632 unplaced-scaffold na na JBBMFA010000039.1 = NZ_JBBMFA010000039.1 Primary Assembly 5632 na CLAJMH11_contig_97_length_26432 unplaced-scaffold na na JBBMFA010000040.1 = NZ_JBBMFA010000040.1 Primary Assembly 26432 na CLAJMH11_contig_98_length_16399 unplaced-scaffold na na JBBMFA010000041.1 = NZ_JBBMFA010000041.1 Primary Assembly 16399 na CLAJMH11_contig_99_length_2006 unplaced-scaffold na na JBBMFA010000042.1 = NZ_JBBMFA010000042.1 Primary Assembly 2006 na CLAJMH11_contig_100_length_27178 unplaced-scaffold na na JBBMFA010000043.1 = NZ_JBBMFA010000043.1 Primary Assembly 27178 na CLAJMH11_contig_101_length_28779 unplaced-scaffold na na JBBMFA010000044.1 = NZ_JBBMFA010000044.1 Primary Assembly 28779 na CLAJMH11_contig_102_length_5735 unplaced-scaffold na na JBBMFA010000045.1 = NZ_JBBMFA010000045.1 Primary Assembly 5735 na CLAJMH11_contig_103_length_10109 unplaced-scaffold na na JBBMFA010000046.1 = NZ_JBBMFA010000046.1 Primary Assembly 10109 na CLAJMH11_contig_104_length_41176 unplaced-scaffold na na JBBMFA010000047.1 = NZ_JBBMFA010000047.1 Primary Assembly 41176 na CLAJMH11_contig_105_length_14274 unplaced-scaffold na na JBBMFA010000048.1 = NZ_JBBMFA010000048.1 Primary Assembly 14274 na CLAJMH11_contig_106_length_1139 unplaced-scaffold na na JBBMFA010000049.1 = NZ_JBBMFA010000049.1 Primary Assembly 1139 na CLAJMH11_contig_107_length_32555 unplaced-scaffold na na JBBMFA010000050.1 = NZ_JBBMFA010000050.1 Primary Assembly 32555 na CLAJMH11_contig_108_length_9434 unplaced-scaffold na na JBBMFA010000051.1 = NZ_JBBMFA010000051.1 Primary Assembly 9434 na CLAJMH11_contig_109_length_32011 unplaced-scaffold na na JBBMFA010000052.1 = NZ_JBBMFA010000052.1 Primary Assembly 32011 na CLAJMH11_contig_110_length_30261 unplaced-scaffold na na JBBMFA010000053.1 = NZ_JBBMFA010000053.1 Primary Assembly 30261 na CLAJMH11_contig_111_length_11701 unplaced-scaffold na na JBBMFA010000054.1 = NZ_JBBMFA010000054.1 Primary Assembly 11701 na CLAJMH11_contig_112_length_6174 unplaced-scaffold na na JBBMFA010000055.1 = NZ_JBBMFA010000055.1 Primary Assembly 6174 na CLAJMH11_contig_113_length_42299 unplaced-scaffold na na JBBMFA010000056.1 = NZ_JBBMFA010000056.1 Primary Assembly 42299 na CLAJMH11_contig_114_length_13165 unplaced-scaffold na na JBBMFA010000057.1 = NZ_JBBMFA010000057.1 Primary Assembly 13165 na CLAJMH11_contig_115_length_38139 unplaced-scaffold na na JBBMFA010000058.1 = NZ_JBBMFA010000058.1 Primary Assembly 38139 na CLAJMH11_contig_116_length_53148 unplaced-scaffold na na JBBMFA010000059.1 = NZ_JBBMFA010000059.1 Primary Assembly 53148 na CLAJMH11_contig_117_length_22661 unplaced-scaffold na na JBBMFA010000060.1 = NZ_JBBMFA010000060.1 Primary Assembly 22661 na CLAJMH11_contig_118_length_24176 unplaced-scaffold na na JBBMFA010000061.1 = NZ_JBBMFA010000061.1 Primary Assembly 24176 na CLAJMH11_contig_120_length_21576 unplaced-scaffold na na JBBMFA010000062.1 = NZ_JBBMFA010000062.1 Primary Assembly 21576 na CLAJMH11_contig_121_length_39330 unplaced-scaffold na na JBBMFA010000063.1 = NZ_JBBMFA010000063.1 Primary Assembly 39330 na CLAJMH11_contig_122_length_7330 unplaced-scaffold na na JBBMFA010000064.1 = NZ_JBBMFA010000064.1 Primary Assembly 7330 na CLAJMH11_contig_125_length_26267 unplaced-scaffold na na JBBMFA010000065.1 = NZ_JBBMFA010000065.1 Primary Assembly 26267 na CLAJMH11_contig_126_length_21688 unplaced-scaffold na na JBBMFA010000066.1 = NZ_JBBMFA010000066.1 Primary Assembly 21688 na CLAJMH11_contig_127_length_16853 unplaced-scaffold na na JBBMFA010000067.1 = NZ_JBBMFA010000067.1 Primary Assembly 16853 na CLAJMH11_contig_128_length_13697 unplaced-scaffold na na JBBMFA010000068.1 = NZ_JBBMFA010000068.1 Primary Assembly 13697 na CLAJMH11_contig_129_length_77211 unplaced-scaffold na na JBBMFA010000069.1 = NZ_JBBMFA010000069.1 Primary Assembly 77211 na CLAJMH11_contig_130_length_4473 unplaced-scaffold na na JBBMFA010000070.1 = NZ_JBBMFA010000070.1 Primary Assembly 4473 na CLAJMH11_contig_131_length_28152 unplaced-scaffold na na JBBMFA010000071.1 = NZ_JBBMFA010000071.1 Primary Assembly 28152 na CLAJMH11_contig_132_length_14361 unplaced-scaffold na na JBBMFA010000072.1 = NZ_JBBMFA010000072.1 Primary Assembly 14361 na CLAJMH11_contig_133_length_12564 unplaced-scaffold na na JBBMFA010000073.1 = NZ_JBBMFA010000073.1 Primary Assembly 12564 na CLAJMH11_contig_134_length_78780 unplaced-scaffold na na JBBMFA010000074.1 = NZ_JBBMFA010000074.1 Primary Assembly 78780 na CLAJMH11_contig_135_length_809 unplaced-scaffold na na JBBMFA010000075.1 = NZ_JBBMFA010000075.1 Primary Assembly 809 na CLAJMH11_contig_142_length_5367 unplaced-scaffold na na JBBMFA010000076.1 = NZ_JBBMFA010000076.1 Primary Assembly 5367 na CLAJMH11_contig_143_length_707 unplaced-scaffold na na JBBMFA010000077.1 = NZ_JBBMFA010000077.1 Primary Assembly 707 na CLAJMH11_contig_144_length_24669 unplaced-scaffold na na JBBMFA010000078.1 = NZ_JBBMFA010000078.1 Primary Assembly 24669 na CLAJMH11_contig_145_length_34508 unplaced-scaffold na na JBBMFA010000079.1 = NZ_JBBMFA010000079.1 Primary Assembly 34508 na CLAJMH11_contig_146_length_48316 unplaced-scaffold na na JBBMFA010000080.1 = NZ_JBBMFA010000080.1 Primary Assembly 48316 na CLAJMH11_contig_147_length_60658 unplaced-scaffold na na JBBMFA010000081.1 = NZ_JBBMFA010000081.1 Primary Assembly 60658 na CLAJMH11_contig_148_length_44559 unplaced-scaffold na na JBBMFA010000082.1 = NZ_JBBMFA010000082.1 Primary Assembly 44559 na CLAJMH11_contig_149_length_27003 unplaced-scaffold na na JBBMFA010000083.1 = NZ_JBBMFA010000083.1 Primary Assembly 27003 na CLAJMH11_contig_150_length_101515 unplaced-scaffold na na JBBMFA010000084.1 = NZ_JBBMFA010000084.1 Primary Assembly 101515 na CLAJMH11_contig_151_length_48069 unplaced-scaffold na na JBBMFA010000085.1 = NZ_JBBMFA010000085.1 Primary Assembly 48069 na CLAJMH11_contig_152_length_6491 unplaced-scaffold na na JBBMFA010000086.1 = NZ_JBBMFA010000086.1 Primary Assembly 6491 na CLAJMH11_contig_153_length_6415 unplaced-scaffold na na JBBMFA010000087.1 = NZ_JBBMFA010000087.1 Primary Assembly 6415 na CLAJMH11_contig_154_length_12067 unplaced-scaffold na na JBBMFA010000088.1 = NZ_JBBMFA010000088.1 Primary Assembly 12067 na CLAJMH11_contig_155_length_33304 unplaced-scaffold na na JBBMFA010000089.1 = NZ_JBBMFA010000089.1 Primary Assembly 33304 na CLAJMH11_contig_156_length_105885 unplaced-scaffold na na JBBMFA010000090.1 = NZ_JBBMFA010000090.1 Primary Assembly 105885 na CLAJMH11_contig_158_length_27482 unplaced-scaffold na na JBBMFA010000091.1 = NZ_JBBMFA010000091.1 Primary Assembly 27482 na CLAJMH11_contig_159_length_85856 unplaced-scaffold na na JBBMFA010000092.1 = NZ_JBBMFA010000092.1 Primary Assembly 85856 na CLAJMH11_contig_160_length_15819 unplaced-scaffold na na JBBMFA010000093.1 = NZ_JBBMFA010000093.1 Primary Assembly 15819 na CLAJMH11_contig_161_length_61968 unplaced-scaffold na na JBBMFA010000094.1 = NZ_JBBMFA010000094.1 Primary Assembly 61968 na CLAJMH11_contig_162_length_80219 unplaced-scaffold na na JBBMFA010000095.1 = NZ_JBBMFA010000095.1 Primary Assembly 80219 na CLAJMH11_contig_163_length_86707 unplaced-scaffold na na JBBMFA010000096.1 = NZ_JBBMFA010000096.1 Primary Assembly 86707 na CLAJMH11_contig_164_length_8855 unplaced-scaffold na na JBBMFA010000097.1 = NZ_JBBMFA010000097.1 Primary Assembly 8855 na CLAJMH11_contig_165_length_60127 unplaced-scaffold na na JBBMFA010000098.1 = NZ_JBBMFA010000098.1 Primary Assembly 60127 na CLAJMH11_contig_166_length_23393 unplaced-scaffold na na JBBMFA010000099.1 = NZ_JBBMFA010000099.1 Primary Assembly 23393 na CLAJMH11_contig_167_length_40181 unplaced-scaffold na na JBBMFA010000100.1 = NZ_JBBMFA010000100.1 Primary Assembly 40181 na CLAJMH11_contig_168_length_175477 unplaced-scaffold na na JBBMFA010000101.1 = NZ_JBBMFA010000101.1 Primary Assembly 175477 na CLAJMH11_contig_171_length_8588 unplaced-scaffold na na JBBMFA010000102.1 = NZ_JBBMFA010000102.1 Primary Assembly 8588 na CLAJMH11_contig_172_length_33690 unplaced-scaffold na na JBBMFA010000103.1 = NZ_JBBMFA010000103.1 Primary Assembly 33690 na CLAJMH11_contig_173_length_66216 unplaced-scaffold na na JBBMFA010000104.1 = NZ_JBBMFA010000104.1 Primary Assembly 66216 na CLAJMH11_contig_174_length_56980 unplaced-scaffold na na JBBMFA010000105.1 = NZ_JBBMFA010000105.1 Primary Assembly 56980 na CLAJMH11_contig_176_length_86614 unplaced-scaffold na na JBBMFA010000106.1 = NZ_JBBMFA010000106.1 Primary Assembly 86614 na CLAJMH11_contig_177_length_6121 unplaced-scaffold na na JBBMFA010000107.1 = NZ_JBBMFA010000107.1 Primary Assembly 6121 na CLAJMH11_contig_178_length_18145 unplaced-scaffold na na JBBMFA010000108.1 = NZ_JBBMFA010000108.1 Primary Assembly 18145 na CLAJMH11_contig_179_length_20099 unplaced-scaffold na na JBBMFA010000109.1 = NZ_JBBMFA010000109.1 Primary Assembly 20099 na CLAJMH11_contig_180_length_23118 unplaced-scaffold na na JBBMFA010000110.1 = NZ_JBBMFA010000110.1 Primary Assembly 23118 na CLAJMH11_contig_181_length_171193 unplaced-scaffold na na JBBMFA010000111.1 = NZ_JBBMFA010000111.1 Primary Assembly 171193 na CLAJMH11_contig_182_length_1575 unplaced-scaffold na na JBBMFA010000112.1 = NZ_JBBMFA010000112.1 Primary Assembly 1575 na CLAJMH11_contig_183_length_83685 unplaced-scaffold na na JBBMFA010000113.1 = NZ_JBBMFA010000113.1 Primary Assembly 83685 na CLAJMH11_contig_185_length_21724 unplaced-scaffold na na JBBMFA010000114.1 = NZ_JBBMFA010000114.1 Primary Assembly 21724 na CLAJMH11_contig_187_length_22313 unplaced-scaffold na na JBBMFA010000115.1 = NZ_JBBMFA010000115.1 Primary Assembly 22313 na CLAJMH11_contig_188_length_73892 unplaced-scaffold na na JBBMFA010000116.1 = NZ_JBBMFA010000116.1 Primary Assembly 73892 na RNODE_1_length_5135_cov_3.88663 unplaced-scaffold na na JBBMFA010000117.1 = NZ_JBBMFA010000117.1 Primary Assembly 5063 na