# Assembly name: ASM4009628v1 # Organism name: Ruminococcoides intestinihominis (firmicutes) # Infraspecific name: strain=CLA-AA-H171 # Taxid: 3133161 # BioSample: SAMN40466805 # BioProject: PRJNA996881 # Submitter: RWTH Aachen University Hospital # Date: 2024-06-07 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JBBMEY01 # Assembly method: SPAdes v. 3.15.5 # Expected final version: yes # Genome coverage: 363x # Sequencing technology: Illumina Nextseq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_040096285.1 # RefSeq assembly accession: GCF_040096285.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_040096295.1 GCF_040096295.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name CLAAAH171_contig_1_length_177900 unplaced-scaffold na na JBBMEY010000001.1 = NZ_JBBMEY010000001.1 Primary Assembly 177900 na CLAAAH171_contig_2_length_120471 unplaced-scaffold na na JBBMEY010000002.1 = NZ_JBBMEY010000002.1 Primary Assembly 120471 na CLAAAH171_contig_3_length_108979 unplaced-scaffold na na JBBMEY010000003.1 = NZ_JBBMEY010000003.1 Primary Assembly 108979 na CLAAAH171_contig_4_length_84903 unplaced-scaffold na na JBBMEY010000004.1 = NZ_JBBMEY010000004.1 Primary Assembly 84903 na CLAAAH171_contig_5_length_82341 unplaced-scaffold na na JBBMEY010000005.1 = NZ_JBBMEY010000005.1 Primary Assembly 82341 na CLAAAH171_contig_6_length_77572 unplaced-scaffold na na JBBMEY010000006.1 = NZ_JBBMEY010000006.1 Primary Assembly 77572 na CLAAAH171_contig_7_length_64770 unplaced-scaffold na na JBBMEY010000007.1 = NZ_JBBMEY010000007.1 Primary Assembly 64770 na CLAAAH171_contig_8_length_64375 unplaced-scaffold na na JBBMEY010000008.1 = NZ_JBBMEY010000008.1 Primary Assembly 64375 na CLAAAH171_contig_9_length_63318 unplaced-scaffold na na JBBMEY010000009.1 = NZ_JBBMEY010000009.1 Primary Assembly 63318 na CLAAAH171_contig_10_length_61046 unplaced-scaffold na na JBBMEY010000010.1 = NZ_JBBMEY010000010.1 Primary Assembly 61046 na CLAAAH171_contig_11_length_59278 unplaced-scaffold na na JBBMEY010000011.1 = NZ_JBBMEY010000011.1 Primary Assembly 59278 na CLAAAH171_contig_12_length_57019 unplaced-scaffold na na JBBMEY010000012.1 = NZ_JBBMEY010000012.1 Primary Assembly 57019 na CLAAAH171_contig_13_length_53162 unplaced-scaffold na na JBBMEY010000013.1 = NZ_JBBMEY010000013.1 Primary Assembly 53162 na CLAAAH171_contig_14_length_52703 unplaced-scaffold na na JBBMEY010000014.1 = NZ_JBBMEY010000014.1 Primary Assembly 52703 na CLAAAH171_contig_15_length_51194 unplaced-scaffold na na JBBMEY010000015.1 = NZ_JBBMEY010000015.1 Primary Assembly 51194 na CLAAAH171_contig_16_length_44351 unplaced-scaffold na na JBBMEY010000016.1 = NZ_JBBMEY010000016.1 Primary Assembly 44351 na CLAAAH171_contig_17_length_41336 unplaced-scaffold na na JBBMEY010000017.1 = NZ_JBBMEY010000017.1 Primary Assembly 41336 na CLAAAH171_contig_18_length_39855 unplaced-scaffold na na JBBMEY010000018.1 = NZ_JBBMEY010000018.1 Primary Assembly 39855 na CLAAAH171_contig_19_length_39648 unplaced-scaffold na na JBBMEY010000019.1 = NZ_JBBMEY010000019.1 Primary Assembly 39648 na CLAAAH171_contig_20_length_39267 unplaced-scaffold na na JBBMEY010000020.1 = NZ_JBBMEY010000020.1 Primary Assembly 39267 na CLAAAH171_contig_21_length_37049 unplaced-scaffold na na JBBMEY010000021.1 = NZ_JBBMEY010000021.1 Primary Assembly 37049 na CLAAAH171_contig_22_length_30709 unplaced-scaffold na na JBBMEY010000022.1 = NZ_JBBMEY010000022.1 Primary Assembly 30709 na CLAAAH171_contig_23_length_30653 unplaced-scaffold na na JBBMEY010000023.1 = NZ_JBBMEY010000023.1 Primary Assembly 30653 na CLAAAH171_contig_24_length_29771 unplaced-scaffold na na JBBMEY010000024.1 = NZ_JBBMEY010000024.1 Primary Assembly 29771 na CLAAAH171_contig_25_length_29462 unplaced-scaffold na na JBBMEY010000025.1 = NZ_JBBMEY010000025.1 Primary Assembly 29462 na CLAAAH171_contig_26_length_27840 unplaced-scaffold na na JBBMEY010000026.1 = NZ_JBBMEY010000026.1 Primary Assembly 27840 na CLAAAH171_contig_27_length_27801 unplaced-scaffold na na JBBMEY010000027.1 = NZ_JBBMEY010000027.1 Primary Assembly 27801 na CLAAAH171_contig_28_length_27407 unplaced-scaffold na na JBBMEY010000028.1 = NZ_JBBMEY010000028.1 Primary Assembly 27407 na CLAAAH171_contig_29_length_27187 unplaced-scaffold na na JBBMEY010000029.1 = NZ_JBBMEY010000029.1 Primary Assembly 27187 na CLAAAH171_contig_30_length_25664 unplaced-scaffold na na JBBMEY010000030.1 = NZ_JBBMEY010000030.1 Primary Assembly 25664 na CLAAAH171_contig_31_length_24531 unplaced-scaffold na na JBBMEY010000031.1 = NZ_JBBMEY010000031.1 Primary Assembly 24531 na CLAAAH171_contig_32_length_24162 unplaced-scaffold na na JBBMEY010000032.1 = NZ_JBBMEY010000032.1 Primary Assembly 24162 na CLAAAH171_contig_33_length_22025 unplaced-scaffold na na JBBMEY010000033.1 = NZ_JBBMEY010000033.1 Primary Assembly 22025 na CLAAAH171_contig_34_length_20660 unplaced-scaffold na na JBBMEY010000034.1 = NZ_JBBMEY010000034.1 Primary Assembly 20660 na CLAAAH171_contig_35_length_20287 unplaced-scaffold na na JBBMEY010000035.1 = NZ_JBBMEY010000035.1 Primary Assembly 20287 na CLAAAH171_contig_36_length_18672 unplaced-scaffold na na JBBMEY010000036.1 = NZ_JBBMEY010000036.1 Primary Assembly 18672 na CLAAAH171_contig_37_length_18514 unplaced-scaffold na na JBBMEY010000037.1 = NZ_JBBMEY010000037.1 Primary Assembly 18514 na CLAAAH171_contig_38_length_18307 unplaced-scaffold na na JBBMEY010000038.1 = NZ_JBBMEY010000038.1 Primary Assembly 18307 na CLAAAH171_contig_39_length_18011 unplaced-scaffold na na JBBMEY010000039.1 = NZ_JBBMEY010000039.1 Primary Assembly 18011 na CLAAAH171_contig_40_length_15556 unplaced-scaffold na na JBBMEY010000040.1 = NZ_JBBMEY010000040.1 Primary Assembly 15556 na CLAAAH171_contig_41_length_15125 unplaced-scaffold na na JBBMEY010000041.1 = NZ_JBBMEY010000041.1 Primary Assembly 15125 na CLAAAH171_contig_42_length_14414 unplaced-scaffold na na JBBMEY010000042.1 = NZ_JBBMEY010000042.1 Primary Assembly 14414 na CLAAAH171_contig_43_length_13718 unplaced-scaffold na na JBBMEY010000043.1 = NZ_JBBMEY010000043.1 Primary Assembly 13718 na CLAAAH171_contig_44_length_13330 unplaced-scaffold na na JBBMEY010000044.1 = NZ_JBBMEY010000044.1 Primary Assembly 13330 na CLAAAH171_contig_45_length_13230 unplaced-scaffold na na JBBMEY010000045.1 = NZ_JBBMEY010000045.1 Primary Assembly 13230 na CLAAAH171_contig_46_length_13097 unplaced-scaffold na na JBBMEY010000046.1 = NZ_JBBMEY010000046.1 Primary Assembly 13097 na CLAAAH171_contig_47_length_12429 unplaced-scaffold na na JBBMEY010000047.1 = NZ_JBBMEY010000047.1 Primary Assembly 12429 na CLAAAH171_contig_48_length_12285 unplaced-scaffold na na JBBMEY010000048.1 = NZ_JBBMEY010000048.1 Primary Assembly 12285 na CLAAAH171_contig_49_length_11192 unplaced-scaffold na na JBBMEY010000049.1 = NZ_JBBMEY010000049.1 Primary Assembly 11192 na CLAAAH171_contig_50_length_10779 unplaced-scaffold na na JBBMEY010000050.1 = NZ_JBBMEY010000050.1 Primary Assembly 10779 na CLAAAH171_contig_51_length_10591 unplaced-scaffold na na JBBMEY010000051.1 = NZ_JBBMEY010000051.1 Primary Assembly 10591 na CLAAAH171_contig_52_length_10522 unplaced-scaffold na na JBBMEY010000052.1 = NZ_JBBMEY010000052.1 Primary Assembly 10522 na CLAAAH171_contig_53_length_10393 unplaced-scaffold na na JBBMEY010000053.1 = NZ_JBBMEY010000053.1 Primary Assembly 10393 na CLAAAH171_contig_54_length_10237 unplaced-scaffold na na JBBMEY010000054.1 = NZ_JBBMEY010000054.1 Primary Assembly 10237 na CLAAAH171_contig_55_length_9882 unplaced-scaffold na na JBBMEY010000055.1 = NZ_JBBMEY010000055.1 Primary Assembly 9882 na CLAAAH171_contig_56_length_9680 unplaced-scaffold na na JBBMEY010000056.1 = NZ_JBBMEY010000056.1 Primary Assembly 9680 na CLAAAH171_contig_57_length_8843 unplaced-scaffold na na JBBMEY010000057.1 = NZ_JBBMEY010000057.1 Primary Assembly 8843 na CLAAAH171_contig_58_length_8751 unplaced-scaffold na na JBBMEY010000058.1 = NZ_JBBMEY010000058.1 Primary Assembly 8751 na CLAAAH171_contig_59_length_8555 unplaced-scaffold na na JBBMEY010000059.1 = NZ_JBBMEY010000059.1 Primary Assembly 8555 na CLAAAH171_contig_60_length_8258 unplaced-scaffold na na JBBMEY010000060.1 = NZ_JBBMEY010000060.1 Primary Assembly 8258 na CLAAAH171_contig_61_length_8177 unplaced-scaffold na na JBBMEY010000061.1 = NZ_JBBMEY010000061.1 Primary Assembly 8177 na CLAAAH171_contig_62_length_8039 unplaced-scaffold na na JBBMEY010000062.1 = NZ_JBBMEY010000062.1 Primary Assembly 8039 na CLAAAH171_contig_63_length_7821 unplaced-scaffold na na JBBMEY010000063.1 = NZ_JBBMEY010000063.1 Primary Assembly 7821 na CLAAAH171_contig_64_length_7685 unplaced-scaffold na na JBBMEY010000064.1 = NZ_JBBMEY010000064.1 Primary Assembly 7685 na CLAAAH171_contig_65_length_6990 unplaced-scaffold na na JBBMEY010000065.1 = NZ_JBBMEY010000065.1 Primary Assembly 6990 na CLAAAH171_contig_66_length_6850 unplaced-scaffold na na JBBMEY010000066.1 = NZ_JBBMEY010000066.1 Primary Assembly 6850 na CLAAAH171_contig_67_length_6529 unplaced-scaffold na na JBBMEY010000067.1 = NZ_JBBMEY010000067.1 Primary Assembly 6529 na CLAAAH171_contig_68_length_6305 unplaced-scaffold na na JBBMEY010000068.1 = NZ_JBBMEY010000068.1 Primary Assembly 6305 na CLAAAH171_contig_69_length_6161 unplaced-scaffold na na JBBMEY010000069.1 = NZ_JBBMEY010000069.1 Primary Assembly 6161 na CLAAAH171_contig_70_length_6085 unplaced-scaffold na na JBBMEY010000070.1 = NZ_JBBMEY010000070.1 Primary Assembly 6085 na CLAAAH171_contig_71_length_5943 unplaced-scaffold na na JBBMEY010000071.1 = NZ_JBBMEY010000071.1 Primary Assembly 5943 na CLAAAH171_contig_72_length_5252 unplaced-scaffold na na JBBMEY010000072.1 = NZ_JBBMEY010000072.1 Primary Assembly 5252 na CLAAAH171_contig_73_length_5168 unplaced-scaffold na na JBBMEY010000073.1 = NZ_JBBMEY010000073.1 Primary Assembly 5168 na CLAAAH171_contig_74_length_5055 unplaced-scaffold na na JBBMEY010000074.1 = NZ_JBBMEY010000074.1 Primary Assembly 5055 na CLAAAH171_contig_75_length_4661 unplaced-scaffold na na JBBMEY010000075.1 = NZ_JBBMEY010000075.1 Primary Assembly 4661 na CLAAAH171_contig_76_length_4416 unplaced-scaffold na na JBBMEY010000076.1 = NZ_JBBMEY010000076.1 Primary Assembly 4416 na CLAAAH171_contig_77_length_4020 unplaced-scaffold na na JBBMEY010000077.1 = NZ_JBBMEY010000077.1 Primary Assembly 4020 na CLAAAH171_contig_78_length_3931 unplaced-scaffold na na JBBMEY010000078.1 = NZ_JBBMEY010000078.1 Primary Assembly 3931 na CLAAAH171_contig_79_length_3829 unplaced-scaffold na na JBBMEY010000079.1 = NZ_JBBMEY010000079.1 Primary Assembly 3829 na CLAAAH171_contig_80_length_3604 unplaced-scaffold na na JBBMEY010000080.1 = NZ_JBBMEY010000080.1 Primary Assembly 3604 na CLAAAH171_contig_81_length_3554 unplaced-scaffold na na JBBMEY010000081.1 = NZ_JBBMEY010000081.1 Primary Assembly 3554 na CLAAAH171_contig_82_length_3345 unplaced-scaffold na na JBBMEY010000082.1 = NZ_JBBMEY010000082.1 Primary Assembly 3345 na CLAAAH171_contig_83_length_3086 unplaced-scaffold na na JBBMEY010000083.1 = NZ_JBBMEY010000083.1 Primary Assembly 3086 na CLAAAH171_contig_84_length_2968 unplaced-scaffold na na JBBMEY010000084.1 = NZ_JBBMEY010000084.1 Primary Assembly 2968 na CLAAAH171_contig_85_length_2646 unplaced-scaffold na na JBBMEY010000085.1 = NZ_JBBMEY010000085.1 Primary Assembly 2646 na CLAAAH171_contig_86_length_2424 unplaced-scaffold na na JBBMEY010000086.1 = NZ_JBBMEY010000086.1 Primary Assembly 2424 na CLAAAH171_contig_87_length_2155 unplaced-scaffold na na JBBMEY010000087.1 = NZ_JBBMEY010000087.1 Primary Assembly 2155 na CLAAAH171_contig_88_length_2105 unplaced-scaffold na na JBBMEY010000088.1 = NZ_JBBMEY010000088.1 Primary Assembly 2105 na CLAAAH171_contig_89_length_1903 unplaced-scaffold na na JBBMEY010000089.1 = NZ_JBBMEY010000089.1 Primary Assembly 1903 na CLAAAH171_contig_90_length_1845 unplaced-scaffold na na JBBMEY010000090.1 = NZ_JBBMEY010000090.1 Primary Assembly 1845 na CLAAAH171_contig_91_length_1625 unplaced-scaffold na na JBBMEY010000091.1 = NZ_JBBMEY010000091.1 Primary Assembly 1625 na CLAAAH171_contig_92_length_1491 unplaced-scaffold na na JBBMEY010000092.1 = NZ_JBBMEY010000092.1 Primary Assembly 1491 na CLAAAH171_contig_93_length_1471 unplaced-scaffold na na JBBMEY010000093.1 = NZ_JBBMEY010000093.1 Primary Assembly 1471 na CLAAAH171_contig_94_length_1092 unplaced-scaffold na na JBBMEY010000094.1 = NZ_JBBMEY010000094.1 Primary Assembly 1092 na CLAAAH171_contig_95_length_966 unplaced-scaffold na na JBBMEY010000095.1 = NZ_JBBMEY010000095.1 Primary Assembly 966 na CLAAAH171_contig_96_length_868 unplaced-scaffold na na JBBMEY010000096.1 = NZ_JBBMEY010000096.1 Primary Assembly 868 na CLAAAH171_contig_97_length_860 unplaced-scaffold na na JBBMEY010000097.1 = NZ_JBBMEY010000097.1 Primary Assembly 860 na CLAAAH171_contig_98_length_854 unplaced-scaffold na na JBBMEY010000098.1 = NZ_JBBMEY010000098.1 Primary Assembly 854 na CLAAAH171_contig_99_length_666 unplaced-scaffold na na JBBMEY010000099.1 = NZ_JBBMEY010000099.1 Primary Assembly 666 na CLAAAH171_contig_100_length_632 unplaced-scaffold na na JBBMEY010000100.1 = NZ_JBBMEY010000100.1 Primary Assembly 632 na CLAAAH171_contig_101_length_518 unplaced-scaffold na na JBBMEY010000101.1 = NZ_JBBMEY010000101.1 Primary Assembly 518 na CLAAAH171_contig_102_length_512 unplaced-scaffold na na JBBMEY010000102.1 = NZ_JBBMEY010000102.1 Primary Assembly 512 na CLAAAH171_contig_103_length_503 unplaced-scaffold na na JBBMEY010000103.1 = NZ_JBBMEY010000103.1 Primary Assembly 503 na RNODE_1_length_1969_cov_78.42016 unplaced-scaffold na na JBBMEY010000104.1 = NZ_JBBMEY010000104.1 Primary Assembly 1825 na