# Assembly name: ASM4009639v1 # Organism name: Lachnospira intestinalis (firmicutes) # Infraspecific name: strain=CLA-JM-H10 # Taxid: 3133158 # BioSample: SAMN40466799 # BioProject: PRJNA996881 # Submitter: RWTH Aachen University Hospital # Date: 2024-06-07 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JBBMES01 # Assembly method: SPAdes v. 3.15.5 # Expected final version: yes # Genome coverage: 435x # Sequencing technology: Illumina Nextseq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_040096395.1 # RefSeq assembly accession: GCF_040096395.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_040096405.1 GCF_040096405.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name CLAJMH10_contig_1_length_379644 unplaced-scaffold na na JBBMES010000001.1 = NZ_JBBMES010000001.1 Primary Assembly 379644 na CLAJMH10_contig_2_length_350299 unplaced-scaffold na na JBBMES010000002.1 = NZ_JBBMES010000002.1 Primary Assembly 350299 na CLAJMH10_contig_3_length_308933 unplaced-scaffold na na JBBMES010000003.1 = NZ_JBBMES010000003.1 Primary Assembly 308933 na CLAJMH10_contig_4_length_222418 unplaced-scaffold na na JBBMES010000004.1 = NZ_JBBMES010000004.1 Primary Assembly 222418 na CLAJMH10_contig_5_length_206363 unplaced-scaffold na na JBBMES010000005.1 = NZ_JBBMES010000005.1 Primary Assembly 206363 na CLAJMH10_contig_6_length_163768 unplaced-scaffold na na JBBMES010000006.1 = NZ_JBBMES010000006.1 Primary Assembly 163768 na CLAJMH10_contig_7_length_157949 unplaced-scaffold na na JBBMES010000007.1 = NZ_JBBMES010000007.1 Primary Assembly 157949 na CLAJMH10_contig_8_length_134660 unplaced-scaffold na na JBBMES010000008.1 = NZ_JBBMES010000008.1 Primary Assembly 134660 na CLAJMH10_contig_9_length_94492 unplaced-scaffold na na JBBMES010000009.1 = NZ_JBBMES010000009.1 Primary Assembly 94492 na CLAJMH10_contig_10_length_92844 unplaced-scaffold na na JBBMES010000010.1 = NZ_JBBMES010000010.1 Primary Assembly 92844 na CLAJMH10_contig_11_length_91696 unplaced-scaffold na na JBBMES010000011.1 = NZ_JBBMES010000011.1 Primary Assembly 91696 na CLAJMH10_contig_12_length_89251 unplaced-scaffold na na JBBMES010000012.1 = NZ_JBBMES010000012.1 Primary Assembly 89251 na CLAJMH10_contig_13_length_87856 unplaced-scaffold na na JBBMES010000013.1 = NZ_JBBMES010000013.1 Primary Assembly 87856 na CLAJMH10_contig_14_length_79617 unplaced-scaffold na na JBBMES010000014.1 = NZ_JBBMES010000014.1 Primary Assembly 79617 na CLAJMH10_contig_15_length_68995 unplaced-scaffold na na JBBMES010000015.1 = NZ_JBBMES010000015.1 Primary Assembly 68995 na CLAJMH10_contig_16_length_60321 unplaced-scaffold na na JBBMES010000016.1 = NZ_JBBMES010000016.1 Primary Assembly 60321 na CLAJMH10_contig_17_length_53814 unplaced-scaffold na na JBBMES010000017.1 = NZ_JBBMES010000017.1 Primary Assembly 53814 na CLAJMH10_contig_18_length_49892 unplaced-scaffold na na JBBMES010000018.1 = NZ_JBBMES010000018.1 Primary Assembly 49892 na CLAJMH10_contig_19_length_47598 unplaced-scaffold na na JBBMES010000019.1 = NZ_JBBMES010000019.1 Primary Assembly 47598 na CLAJMH10_contig_20_length_45395 unplaced-scaffold na na JBBMES010000020.1 = NZ_JBBMES010000020.1 Primary Assembly 45395 na CLAJMH10_contig_21_length_43662 unplaced-scaffold na na JBBMES010000021.1 = NZ_JBBMES010000021.1 Primary Assembly 43662 na CLAJMH10_contig_22_length_43282 unplaced-scaffold na na JBBMES010000022.1 = NZ_JBBMES010000022.1 Primary Assembly 43282 na CLAJMH10_contig_23_length_43184 unplaced-scaffold na na JBBMES010000023.1 = NZ_JBBMES010000023.1 Primary Assembly 43184 na CLAJMH10_contig_24_length_28099 unplaced-scaffold na na JBBMES010000024.1 = NZ_JBBMES010000024.1 Primary Assembly 28099 na CLAJMH10_contig_25_length_21888 unplaced-scaffold na na JBBMES010000025.1 = NZ_JBBMES010000025.1 Primary Assembly 21888 na CLAJMH10_contig_26_length_17761 unplaced-scaffold na na JBBMES010000026.1 = NZ_JBBMES010000026.1 Primary Assembly 17761 na CLAJMH10_contig_27_length_15839 unplaced-scaffold na na JBBMES010000027.1 = NZ_JBBMES010000027.1 Primary Assembly 15839 na CLAJMH10_contig_28_length_15585 unplaced-scaffold na na JBBMES010000028.1 = NZ_JBBMES010000028.1 Primary Assembly 15585 na CLAJMH10_contig_29_length_12220 unplaced-scaffold na na JBBMES010000029.1 = NZ_JBBMES010000029.1 Primary Assembly 12220 na CLAJMH10_contig_30_length_10471 unplaced-scaffold na na JBBMES010000030.1 = NZ_JBBMES010000030.1 Primary Assembly 10471 na CLAJMH10_contig_31_length_10253 unplaced-scaffold na na JBBMES010000031.1 = NZ_JBBMES010000031.1 Primary Assembly 10253 na CLAJMH10_contig_32_length_9210 unplaced-scaffold na na JBBMES010000032.1 = NZ_JBBMES010000032.1 Primary Assembly 9210 na CLAJMH10_contig_33_length_7648 unplaced-scaffold na na JBBMES010000033.1 = NZ_JBBMES010000033.1 Primary Assembly 7648 na CLAJMH10_contig_34_length_7116 unplaced-scaffold na na JBBMES010000034.1 = NZ_JBBMES010000034.1 Primary Assembly 7116 na CLAJMH10_contig_35_length_6544 unplaced-scaffold na na JBBMES010000035.1 = NZ_JBBMES010000035.1 Primary Assembly 6544 na CLAJMH10_contig_36_length_5001 unplaced-scaffold na na JBBMES010000036.1 = NZ_JBBMES010000036.1 Primary Assembly 5001 na CLAJMH10_contig_37_length_4645 unplaced-scaffold na na JBBMES010000037.1 = NZ_JBBMES010000037.1 Primary Assembly 4645 na CLAJMH10_contig_38_length_4131 unplaced-scaffold na na JBBMES010000038.1 = NZ_JBBMES010000038.1 Primary Assembly 4131 na CLAJMH10_contig_39_length_3728 unplaced-scaffold na na JBBMES010000039.1 = NZ_JBBMES010000039.1 Primary Assembly 3728 na CLAJMH10_contig_40_length_3381 unplaced-scaffold na na JBBMES010000040.1 = NZ_JBBMES010000040.1 Primary Assembly 3381 na CLAJMH10_contig_41_length_3176 unplaced-scaffold na na JBBMES010000041.1 = NZ_JBBMES010000041.1 Primary Assembly 3176 na CLAJMH10_contig_42_length_2855 unplaced-scaffold na na JBBMES010000042.1 = NZ_JBBMES010000042.1 Primary Assembly 2855 na CLAJMH10_contig_43_length_2654 unplaced-scaffold na na JBBMES010000043.1 = NZ_JBBMES010000043.1 Primary Assembly 2654 na CLAJMH10_contig_44_length_2586 unplaced-scaffold na na JBBMES010000044.1 = NZ_JBBMES010000044.1 Primary Assembly 2586 na CLAJMH10_contig_45_length_2395 unplaced-scaffold na na JBBMES010000045.1 = NZ_JBBMES010000045.1 Primary Assembly 2395 na CLAJMH10_contig_46_length_2334 unplaced-scaffold na na JBBMES010000046.1 = NZ_JBBMES010000046.1 Primary Assembly 2334 na CLAJMH10_contig_47_length_2132 unplaced-scaffold na na JBBMES010000047.1 = NZ_JBBMES010000047.1 Primary Assembly 2132 na CLAJMH10_contig_48_length_2063 unplaced-scaffold na na JBBMES010000048.1 = NZ_JBBMES010000048.1 Primary Assembly 2063 na CLAJMH10_contig_49_length_1970 unplaced-scaffold na na JBBMES010000049.1 = NZ_JBBMES010000049.1 Primary Assembly 1970 na CLAJMH10_contig_50_length_1919 unplaced-scaffold na na JBBMES010000050.1 = NZ_JBBMES010000050.1 Primary Assembly 1919 na CLAJMH10_contig_51_length_1879 unplaced-scaffold na na JBBMES010000051.1 = NZ_JBBMES010000051.1 Primary Assembly 1879 na CLAJMH10_contig_52_length_1810 unplaced-scaffold na na JBBMES010000052.1 = NZ_JBBMES010000052.1 Primary Assembly 1810 na CLAJMH10_contig_53_length_1704 unplaced-scaffold na na JBBMES010000053.1 = NZ_JBBMES010000053.1 Primary Assembly 1704 na CLAJMH10_contig_54_length_1644 unplaced-scaffold na na JBBMES010000054.1 = NZ_JBBMES010000054.1 Primary Assembly 1644 na CLAJMH10_contig_55_length_1505 unplaced-scaffold na na JBBMES010000055.1 = NZ_JBBMES010000055.1 Primary Assembly 1505 na CLAJMH10_contig_56_length_1409 unplaced-scaffold na na JBBMES010000056.1 = NZ_JBBMES010000056.1 Primary Assembly 1409 na CLAJMH10_contig_57_length_1318 unplaced-scaffold na na JBBMES010000057.1 = NZ_JBBMES010000057.1 Primary Assembly 1318 na CLAJMH10_contig_58_length_1247 unplaced-scaffold na na JBBMES010000058.1 = NZ_JBBMES010000058.1 Primary Assembly 1247 na CLAJMH10_contig_59_length_1225 unplaced-scaffold na na JBBMES010000059.1 = NZ_JBBMES010000059.1 Primary Assembly 1225 na CLAJMH10_contig_60_length_1008 unplaced-scaffold na na JBBMES010000060.1 = NZ_JBBMES010000060.1 Primary Assembly 1008 na CLAJMH10_contig_61_length_995 unplaced-scaffold na na JBBMES010000061.1 = NZ_JBBMES010000061.1 Primary Assembly 995 na CLAJMH10_contig_62_length_972 unplaced-scaffold na na JBBMES010000062.1 = NZ_JBBMES010000062.1 Primary Assembly 972 na CLAJMH10_contig_63_length_942 unplaced-scaffold na na JBBMES010000063.1 = NZ_JBBMES010000063.1 Primary Assembly 942 na CLAJMH10_contig_64_length_905 unplaced-scaffold na na JBBMES010000064.1 = NZ_JBBMES010000064.1 Primary Assembly 905 na CLAJMH10_contig_65_length_905 unplaced-scaffold na na JBBMES010000065.1 = NZ_JBBMES010000065.1 Primary Assembly 905 na CLAJMH10_contig_66_length_902 unplaced-scaffold na na JBBMES010000066.1 = NZ_JBBMES010000066.1 Primary Assembly 902 na CLAJMH10_contig_67_length_857 unplaced-scaffold na na JBBMES010000067.1 = NZ_JBBMES010000067.1 Primary Assembly 857 na CLAJMH10_contig_68_length_746 unplaced-scaffold na na JBBMES010000068.1 = NZ_JBBMES010000068.1 Primary Assembly 746 na CLAJMH10_contig_69_length_742 unplaced-scaffold na na JBBMES010000069.1 = NZ_JBBMES010000069.1 Primary Assembly 742 na CLAJMH10_contig_70_length_741 unplaced-scaffold na na JBBMES010000070.1 = NZ_JBBMES010000070.1 Primary Assembly 741 na CLAJMH10_contig_71_length_667 unplaced-scaffold na na JBBMES010000071.1 = NZ_JBBMES010000071.1 Primary Assembly 667 na CLAJMH10_contig_72_length_666 unplaced-scaffold na na JBBMES010000072.1 = NZ_JBBMES010000072.1 Primary Assembly 666 na CLAJMH10_contig_73_length_647 unplaced-scaffold na na JBBMES010000073.1 = NZ_JBBMES010000073.1 Primary Assembly 647 na CLAJMH10_contig_74_length_586 unplaced-scaffold na na JBBMES010000074.1 = NZ_JBBMES010000074.1 Primary Assembly 586 na CLAJMH10_contig_75_length_586 unplaced-scaffold na na JBBMES010000075.1 = NZ_JBBMES010000075.1 Primary Assembly 586 na CLAJMH10_contig_76_length_584 unplaced-scaffold na na JBBMES010000076.1 = NZ_JBBMES010000076.1 Primary Assembly 584 na CLAJMH10_contig_77_length_584 unplaced-scaffold na na JBBMES010000077.1 = NZ_JBBMES010000077.1 Primary Assembly 584 na CLAJMH10_contig_78_length_564 unplaced-scaffold na na JBBMES010000078.1 = NZ_JBBMES010000078.1 Primary Assembly 564 na CLAJMH10_contig_79_length_546 unplaced-scaffold na na JBBMES010000079.1 = NZ_JBBMES010000079.1 Primary Assembly 546 na CLAJMH10_contig_80_length_536 unplaced-scaffold na na JBBMES010000080.1 = NZ_JBBMES010000080.1 Primary Assembly 536 na CLAJMH10_contig_81_length_534 unplaced-scaffold na na JBBMES010000081.1 = NZ_JBBMES010000081.1 Primary Assembly 534 na