# Assembly name: ASM4054455v1 # Organism name: Halalkalibacter oceani (firmicutes) # Infraspecific name: strain=DSM 100579 # Taxid: 1653776 # BioSample: SAMN41624502 # BioProject: PRJNA1118796 # Submitter: DOE Joint Genome Institute # Date: 2024-07-08 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JBEPKD01 # Assembly method: SPAdes v. 3.14.1 # Expected final version: no # Genome coverage: 228.0x # Sequencing technology: Illumina # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_040544555.1 # RefSeq assembly accession: GCF_040544555.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_040544565.1 GCF_040544565.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Ga0480542_01 unplaced-scaffold na na JBEPKD010000001.1 = NZ_JBEPKD010000001.1 Primary Assembly 690621 na Ga0480542_02 unplaced-scaffold na na JBEPKD010000002.1 = NZ_JBEPKD010000002.1 Primary Assembly 314219 na Ga0480542_03 unplaced-scaffold na na JBEPKD010000003.1 = NZ_JBEPKD010000003.1 Primary Assembly 276421 na Ga0480542_04 unplaced-scaffold na na JBEPKD010000004.1 = NZ_JBEPKD010000004.1 Primary Assembly 198370 na Ga0480542_05 unplaced-scaffold na na JBEPKD010000005.1 = NZ_JBEPKD010000005.1 Primary Assembly 197000 na Ga0480542_06 unplaced-scaffold na na JBEPKD010000006.1 = NZ_JBEPKD010000006.1 Primary Assembly 196988 na Ga0480542_07 unplaced-scaffold na na JBEPKD010000007.1 = NZ_JBEPKD010000007.1 Primary Assembly 192926 na Ga0480542_08 unplaced-scaffold na na JBEPKD010000008.1 = NZ_JBEPKD010000008.1 Primary Assembly 185026 na Ga0480542_09 unplaced-scaffold na na JBEPKD010000009.1 = NZ_JBEPKD010000009.1 Primary Assembly 173673 na Ga0480542_10 unplaced-scaffold na na JBEPKD010000010.1 = NZ_JBEPKD010000010.1 Primary Assembly 137296 na Ga0480542_11 unplaced-scaffold na na JBEPKD010000011.1 = NZ_JBEPKD010000011.1 Primary Assembly 111095 na Ga0480542_12 unplaced-scaffold na na JBEPKD010000012.1 = NZ_JBEPKD010000012.1 Primary Assembly 110166 na Ga0480542_13 unplaced-scaffold na na JBEPKD010000013.1 = NZ_JBEPKD010000013.1 Primary Assembly 102508 na Ga0480542_14 unplaced-scaffold na na JBEPKD010000014.1 = NZ_JBEPKD010000014.1 Primary Assembly 102433 na Ga0480542_15 unplaced-scaffold na na JBEPKD010000015.1 = NZ_JBEPKD010000015.1 Primary Assembly 100023 na Ga0480542_16 unplaced-scaffold na na JBEPKD010000016.1 = NZ_JBEPKD010000016.1 Primary Assembly 84974 na Ga0480542_17 unplaced-scaffold na na JBEPKD010000017.1 = NZ_JBEPKD010000017.1 Primary Assembly 84789 na Ga0480542_18 unplaced-scaffold na na JBEPKD010000018.1 = NZ_JBEPKD010000018.1 Primary Assembly 79481 na Ga0480542_19 unplaced-scaffold na na JBEPKD010000019.1 = NZ_JBEPKD010000019.1 Primary Assembly 78408 na Ga0480542_20 unplaced-scaffold na na JBEPKD010000020.1 = NZ_JBEPKD010000020.1 Primary Assembly 75047 na Ga0480542_21 unplaced-scaffold na na JBEPKD010000021.1 = NZ_JBEPKD010000021.1 Primary Assembly 74208 na Ga0480542_22 unplaced-scaffold na na JBEPKD010000022.1 = NZ_JBEPKD010000022.1 Primary Assembly 69894 na Ga0480542_23 unplaced-scaffold na na JBEPKD010000023.1 = NZ_JBEPKD010000023.1 Primary Assembly 67085 na Ga0480542_24 unplaced-scaffold na na JBEPKD010000024.1 = NZ_JBEPKD010000024.1 Primary Assembly 61082 na Ga0480542_25 unplaced-scaffold na na JBEPKD010000025.1 = NZ_JBEPKD010000025.1 Primary Assembly 60498 na Ga0480542_26 unplaced-scaffold na na JBEPKD010000026.1 = NZ_JBEPKD010000026.1 Primary Assembly 60135 na Ga0480542_27 unplaced-scaffold na na JBEPKD010000027.1 = NZ_JBEPKD010000027.1 Primary Assembly 55617 na Ga0480542_28 unplaced-scaffold na na JBEPKD010000028.1 = NZ_JBEPKD010000028.1 Primary Assembly 53755 na Ga0480542_29 unplaced-scaffold na na JBEPKD010000029.1 = NZ_JBEPKD010000029.1 Primary Assembly 49349 na Ga0480542_30 unplaced-scaffold na na JBEPKD010000030.1 = NZ_JBEPKD010000030.1 Primary Assembly 43713 na Ga0480542_31 unplaced-scaffold na na JBEPKD010000031.1 = NZ_JBEPKD010000031.1 Primary Assembly 41745 na Ga0480542_32 unplaced-scaffold na na JBEPKD010000032.1 = NZ_JBEPKD010000032.1 Primary Assembly 40598 na Ga0480542_33 unplaced-scaffold na na JBEPKD010000033.1 = NZ_JBEPKD010000033.1 Primary Assembly 39000 na Ga0480542_34 unplaced-scaffold na na JBEPKD010000034.1 = NZ_JBEPKD010000034.1 Primary Assembly 36839 na Ga0480542_35 unplaced-scaffold na na JBEPKD010000035.1 = NZ_JBEPKD010000035.1 Primary Assembly 23354 na Ga0480542_36 unplaced-scaffold na na JBEPKD010000036.1 = NZ_JBEPKD010000036.1 Primary Assembly 20227 na Ga0480542_37 unplaced-scaffold na na JBEPKD010000037.1 = NZ_JBEPKD010000037.1 Primary Assembly 20203 na Ga0480542_38 unplaced-scaffold na na JBEPKD010000038.1 = NZ_JBEPKD010000038.1 Primary Assembly 20198 na Ga0480542_39 unplaced-scaffold na na JBEPKD010000039.1 = NZ_JBEPKD010000039.1 Primary Assembly 20169 na Ga0480542_40 unplaced-scaffold na na JBEPKD010000040.1 = NZ_JBEPKD010000040.1 Primary Assembly 19635 na Ga0480542_41 unplaced-scaffold na na JBEPKD010000041.1 = NZ_JBEPKD010000041.1 Primary Assembly 18271 na Ga0480542_42 unplaced-scaffold na na JBEPKD010000042.1 = NZ_JBEPKD010000042.1 Primary Assembly 17707 na Ga0480542_43 unplaced-scaffold na na JBEPKD010000043.1 = NZ_JBEPKD010000043.1 Primary Assembly 13363 na Ga0480542_44 unplaced-scaffold na na JBEPKD010000044.1 = NZ_JBEPKD010000044.1 Primary Assembly 13056 na Ga0480542_45 unplaced-scaffold na na JBEPKD010000045.1 = NZ_JBEPKD010000045.1 Primary Assembly 12351 na Ga0480542_46 unplaced-scaffold na na JBEPKD010000046.1 = NZ_JBEPKD010000046.1 Primary Assembly 10227 na Ga0480542_47 unplaced-scaffold na na JBEPKD010000047.1 = NZ_JBEPKD010000047.1 Primary Assembly 9190 na Ga0480542_48 unplaced-scaffold na na JBEPKD010000048.1 = NZ_JBEPKD010000048.1 Primary Assembly 8027 na Ga0480542_49 unplaced-scaffold na na JBEPKD010000049.1 = NZ_JBEPKD010000049.1 Primary Assembly 7532 na Ga0480542_50 unplaced-scaffold na na JBEPKD010000050.1 = NZ_JBEPKD010000050.1 Primary Assembly 7193 na Ga0480542_51 unplaced-scaffold na na JBEPKD010000051.1 = NZ_JBEPKD010000051.1 Primary Assembly 6479 na Ga0480542_52 unplaced-scaffold na na JBEPKD010000052.1 = NZ_JBEPKD010000052.1 Primary Assembly 3953 na Ga0480542_53 unplaced-scaffold na na JBEPKD010000053.1 = NZ_JBEPKD010000053.1 Primary Assembly 3750 na Ga0480542_54 unplaced-scaffold na na JBEPKD010000054.1 = NZ_JBEPKD010000054.1 Primary Assembly 2725 na Ga0480542_55 unplaced-scaffold na na JBEPKD010000055.1 = NZ_JBEPKD010000055.1 Primary Assembly 2603 na Ga0480542_56 unplaced-scaffold na na JBEPKD010000056.1 = NZ_JBEPKD010000056.1 Primary Assembly 2518 na Ga0480542_57 unplaced-scaffold na na JBEPKD010000057.1 = NZ_JBEPKD010000057.1 Primary Assembly 2502 na Ga0480542_58 unplaced-scaffold na na JBEPKD010000058.1 = NZ_JBEPKD010000058.1 Primary Assembly 2433 na Ga0480542_59 unplaced-scaffold na na JBEPKD010000059.1 = NZ_JBEPKD010000059.1 Primary Assembly 2172 na Ga0480542_60 unplaced-scaffold na na JBEPKD010000060.1 = NZ_JBEPKD010000060.1 Primary Assembly 1910 na Ga0480542_61 unplaced-scaffold na na JBEPKD010000061.1 = NZ_JBEPKD010000061.1 Primary Assembly 1887 na Ga0480542_62 unplaced-scaffold na na JBEPKD010000062.1 = NZ_JBEPKD010000062.1 Primary Assembly 1757 na Ga0480542_63 unplaced-scaffold na na JBEPKD010000063.1 = NZ_JBEPKD010000063.1 Primary Assembly 1603 na Ga0480542_64 unplaced-scaffold na na JBEPKD010000064.1 = NZ_JBEPKD010000064.1 Primary Assembly 1214 na Ga0480542_65 unplaced-scaffold na na JBEPKD010000065.1 = NZ_JBEPKD010000065.1 Primary Assembly 1106 na Ga0480542_66 unplaced-scaffold na na JBEPKD010000066.1 = NZ_JBEPKD010000066.1 Primary Assembly 1022 na