# Assembly name: MJ_LKY # Organism name: Manis javanica (Malayan pangolin) # Isolate: MJ-LG # Sex: male # Taxid: 9974 # BioSample: SAMN41491306 # BioProject: PRJNA1114675 # Submitter: Northeast Forestry University # Date: 2024-07-22 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBFMMM01 # Assembly method: hifiasm v. v0.16.1 # Expected final version: yes # Genome coverage: 38x # Sequencing technology: PacBio Sequel # RefSeq category: Reference Genome # GenBank assembly accession: GCA_040802235.1 # RefSeq assembly accession: GCF_040802235.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_040802295.1 GCF_040802295.1 Primary Assembly ## GCF_001693585.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Chromosome_1.HiC_scaffold_1 assembled-molecule 1 Chromosome CM081328.1 = NC_133156.1 Primary Assembly 241980339 na Chromosome_2.HiC_scaffold_2 assembled-molecule 2 Chromosome CM081329.1 = NC_133157.1 Primary Assembly 226986637 na Chromosome_3.HiC_scaffold_3 assembled-molecule 3 Chromosome CM081330.1 = NC_133158.1 Primary Assembly 217799483 na Chromosome_4.HiC_scaffold_4 assembled-molecule 4 Chromosome CM081331.1 = NC_133159.1 Primary Assembly 183360244 na Chromosome_5.HiC_scaffold_5 assembled-molecule 5 Chromosome CM081332.1 = NC_133160.1 Primary Assembly 174144158 na Chromosome_6.HiC_scaffold_6 assembled-molecule 6 Chromosome CM081333.1 = NC_133161.1 Primary Assembly 150327384 na Chromosome_7.HiC_scaffold_8 assembled-molecule 7 Chromosome CM081334.1 = NC_133162.1 Primary Assembly 139175493 na Chromosome_8.HiC_scaffold_9 assembled-molecule 8 Chromosome CM081335.1 = NC_133163.1 Primary Assembly 125332986 na Chromosome_9.HiC_scaffold_10 assembled-molecule 9 Chromosome CM081336.1 = NC_133164.1 Primary Assembly 125306029 na Chromosome_10.HiC_scaffold_11 assembled-molecule 10 Chromosome CM081337.1 = NC_133165.1 Primary Assembly 119352310 na Chromosome_11.HiC_scaffold_12 assembled-molecule 11 Chromosome CM081338.1 = NC_133166.1 Primary Assembly 119084320 na Chromosome_12.HiC_scaffold_13 assembled-molecule 12 Chromosome CM081339.1 = NC_133167.1 Primary Assembly 111219906 na Chromosome_13.HiC_scaffold_14 assembled-molecule 13 Chromosome CM081340.1 = NC_133168.1 Primary Assembly 101123189 na Chromosome_14.HiC_scaffold_15 assembled-molecule 14 Chromosome CM081341.1 = NC_133169.1 Primary Assembly 93993658 na Chromosome_15.HiC_scaffold_16 assembled-molecule 15 Chromosome CM081342.1 = NC_133170.1 Primary Assembly 88959520 na Chromosome_16.HiC_scaffold_17 assembled-molecule 16 Chromosome CM081343.1 = NC_133171.1 Primary Assembly 71213482 na Chromosome_17.HiC_scaffold_18 assembled-molecule 17 Chromosome CM081344.1 = NC_133172.1 Primary Assembly 64558851 na Chromosome_18.HiC_scaffold_19 assembled-molecule 18 Chromosome CM081345.1 = NC_133173.1 Primary Assembly 25285487 na Chromosome_X.HiC_scaffold_7 assembled-molecule X Chromosome CM081346.1 = NC_133174.1 Primary Assembly 141798549 na Chromosome_Y.HiC_scaffold_20 assembled-molecule Y Chromosome CM081347.1 = NC_133175.1 Primary Assembly 6250399 na HiC_scaffold_21 unplaced-scaffold na na JBFMMM010000021.1 = NW_027332167.1 Primary Assembly 4855193 na HiC_scaffold_22 unplaced-scaffold na na JBFMMM010000022.1 = NW_027332168.1 Primary Assembly 3451090 na HiC_scaffold_23 unplaced-scaffold na na JBFMMM010000023.1 = NW_027332169.1 Primary Assembly 2998147 na HiC_scaffold_24 unplaced-scaffold na na JBFMMM010000024.1 = NW_027332170.1 Primary Assembly 2984314 na HiC_scaffold_25 unplaced-scaffold na na JBFMMM010000025.1 = NW_027332171.1 Primary Assembly 2209627 na HiC_scaffold_26 unplaced-scaffold na na JBFMMM010000026.1 = NW_027332172.1 Primary Assembly 2113725 na HiC_scaffold_27 unplaced-scaffold na na JBFMMM010000027.1 = NW_027332173.1 Primary Assembly 1044313 na HiC_scaffold_28 unplaced-scaffold na na JBFMMM010000028.1 = NW_027332174.1 Primary Assembly 996380 na HiC_scaffold_29 unplaced-scaffold na na JBFMMM010000029.1 = NW_027332175.1 Primary Assembly 968066 na HiC_scaffold_30 unplaced-scaffold na na JBFMMM010000030.1 = NW_027332176.1 Primary Assembly 953467 na HiC_scaffold_31 unplaced-scaffold na na JBFMMM010000031.1 = NW_027332177.1 Primary Assembly 853796 na HiC_scaffold_32 unplaced-scaffold na na JBFMMM010000032.1 = NW_027332178.1 Primary Assembly 806372 na HiC_scaffold_33 unplaced-scaffold na na JBFMMM010000033.1 = NW_027332179.1 Primary Assembly 631326 na HiC_scaffold_34 unplaced-scaffold na na JBFMMM010000034.1 = NW_027332180.1 Primary Assembly 595968 na HiC_scaffold_35 unplaced-scaffold na na JBFMMM010000035.1 = NW_027332181.1 Primary Assembly 500000 na HiC_scaffold_36 unplaced-scaffold na na JBFMMM010000036.1 = NW_027332182.1 Primary Assembly 500000 na HiC_scaffold_37 unplaced-scaffold na na JBFMMM010000037.1 = NW_027332183.1 Primary Assembly 440886 na HiC_scaffold_38 unplaced-scaffold na na JBFMMM010000038.1 = NW_027332184.1 Primary Assembly 437741 na HiC_scaffold_39 unplaced-scaffold na na JBFMMM010000039.1 = NW_027332185.1 Primary Assembly 436890 na HiC_scaffold_40 unplaced-scaffold na na JBFMMM010000040.1 = NW_027332186.1 Primary Assembly 413673 na HiC_scaffold_41 unplaced-scaffold na na JBFMMM010000041.1 = NW_027332187.1 Primary Assembly 408011 na HiC_scaffold_42 unplaced-scaffold na na JBFMMM010000042.1 = NW_027332188.1 Primary Assembly 354581 na HiC_scaffold_43 unplaced-scaffold na na JBFMMM010000043.1 = NW_027332189.1 Primary Assembly 354470 na HiC_scaffold_44 unplaced-scaffold na na JBFMMM010000044.1 = NW_027332190.1 Primary Assembly 305432 na HiC_scaffold_45 unplaced-scaffold na na JBFMMM010000045.1 = NW_027332191.1 Primary Assembly 295215 na HiC_scaffold_46 unplaced-scaffold na na JBFMMM010000046.1 = NW_027332192.1 Primary Assembly 285494 na HiC_scaffold_47 unplaced-scaffold na na JBFMMM010000047.1 = NW_027332193.1 Primary Assembly 272596 na HiC_scaffold_48 unplaced-scaffold na na JBFMMM010000048.1 = NW_027332194.1 Primary Assembly 271792 na HiC_scaffold_49 unplaced-scaffold na na JBFMMM010000049.1 = NW_027332195.1 Primary Assembly 258236 na HiC_scaffold_50 unplaced-scaffold na na JBFMMM010000050.1 = NW_027332196.1 Primary Assembly 250000 na HiC_scaffold_51 unplaced-scaffold na na JBFMMM010000051.1 = NW_027332197.1 Primary Assembly 215167 na HiC_scaffold_52 unplaced-scaffold na na JBFMMM010000052.1 = NW_027332198.1 Primary Assembly 173175 na HiC_scaffold_53 unplaced-scaffold na na JBFMMM010000053.1 = NW_027332199.1 Primary Assembly 158354 na HiC_scaffold_54 unplaced-scaffold na na JBFMMM010000054.1 = NW_027332200.1 Primary Assembly 138140 na HiC_scaffold_55 unplaced-scaffold na na JBFMMM010000055.1 = NW_027332201.1 Primary Assembly 134564 na HiC_scaffold_56 unplaced-scaffold na na JBFMMM010000056.1 = NW_027332202.1 Primary Assembly 130507 na HiC_scaffold_57 unplaced-scaffold na na JBFMMM010000057.1 = NW_027332203.1 Primary Assembly 129517 na HiC_scaffold_58 unplaced-scaffold na na JBFMMM010000058.1 = NW_027332204.1 Primary Assembly 125000 na HiC_scaffold_59 unplaced-scaffold na na JBFMMM010000059.1 = NW_027332205.1 Primary Assembly 100845 na HiC_scaffold_60 unplaced-scaffold na na JBFMMM010000060.1 = NW_027332206.1 Primary Assembly 70214 na HiC_scaffold_61 unplaced-scaffold na na JBFMMM010000061.1 = NW_027332207.1 Primary Assembly 58440 na HiC_scaffold_62 unplaced-scaffold na na JBFMMM010000062.1 = NW_027332208.1 Primary Assembly 46400 na MT assembled-molecule MT Mitochondrion na <> NC_026781.1 non-nuclear 16576 na