# Assembly name: ASM4098119v1 # Organism name: Kocuria oxytropis (high G+C Gram-positive bacteria) # Infraspecific name: strain=CPCC 205268 # Taxid: 3058913 # BioSample: SAMN36291373 # BioProject: PRJNA991284 # Submitter: Chinese Academy of Medical Sciences & Peking Union Medical College # Date: 2024-07-31 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JAVFXA01 # Assembly method: SOAPdenovo v. 1.05 # Expected final version: no # Genome coverage: 626.0x # Sequencing technology: Illumina HiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_040981195.1 # RefSeq assembly accession: GCF_040981195.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_040981225.1 GCF_040981225.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Scaffold1_1 unplaced-scaffold na na JAVFXA010000001.1 = NZ_JAVFXA010000001.1 Primary Assembly 519088 na Scaffold2_1 unplaced-scaffold na na JAVFXA010000002.1 = NZ_JAVFXA010000002.1 Primary Assembly 345204 na Scaffold3_1 unplaced-scaffold na na JAVFXA010000003.1 = NZ_JAVFXA010000003.1 Primary Assembly 293495 na Scaffold4_1 unplaced-scaffold na na JAVFXA010000004.1 = NZ_JAVFXA010000004.1 Primary Assembly 282247 na Scaffold5_1 unplaced-scaffold na na JAVFXA010000005.1 = NZ_JAVFXA010000005.1 Primary Assembly 249098 na Scaffold6_1 unplaced-scaffold na na JAVFXA010000006.1 = NZ_JAVFXA010000006.1 Primary Assembly 222060 na Scaffold7_1 unplaced-scaffold na na JAVFXA010000007.1 = NZ_JAVFXA010000007.1 Primary Assembly 212858 na Scaffold8_1 unplaced-scaffold na na JAVFXA010000008.1 = NZ_JAVFXA010000008.1 Primary Assembly 174813 na Scaffold9_1 unplaced-scaffold na na JAVFXA010000009.1 = NZ_JAVFXA010000009.1 Primary Assembly 173061 na Scaffold10_1 unplaced-scaffold na na JAVFXA010000010.1 = NZ_JAVFXA010000010.1 Primary Assembly 167820 na Scaffold11_1 unplaced-scaffold na na JAVFXA010000011.1 = NZ_JAVFXA010000011.1 Primary Assembly 160612 na Scaffold12_1 unplaced-scaffold na na JAVFXA010000012.1 = NZ_JAVFXA010000012.1 Primary Assembly 136913 na Scaffold13_1 unplaced-scaffold na na JAVFXA010000013.1 = NZ_JAVFXA010000013.1 Primary Assembly 117286 na Scaffold14_1 unplaced-scaffold na na JAVFXA010000014.1 = NZ_JAVFXA010000014.1 Primary Assembly 82547 na Scaffold15_1 unplaced-scaffold na na JAVFXA010000015.1 = NZ_JAVFXA010000015.1 Primary Assembly 65224 na Scaffold16_1 unplaced-scaffold na na JAVFXA010000016.1 = NZ_JAVFXA010000016.1 Primary Assembly 57863 na Scaffold17_1 unplaced-scaffold na na JAVFXA010000017.1 = NZ_JAVFXA010000017.1 Primary Assembly 55172 na Scaffold18_1 unplaced-scaffold na na JAVFXA010000018.1 = NZ_JAVFXA010000018.1 Primary Assembly 54756 na Scaffold19_1 unplaced-scaffold na na JAVFXA010000019.1 = NZ_JAVFXA010000019.1 Primary Assembly 52438 na Scaffold20_1 unplaced-scaffold na na JAVFXA010000020.1 = NZ_JAVFXA010000020.1 Primary Assembly 46824 na Scaffold21_1 unplaced-scaffold na na JAVFXA010000021.1 = NZ_JAVFXA010000021.1 Primary Assembly 42453 na Scaffold22_1 unplaced-scaffold na na JAVFXA010000022.1 = NZ_JAVFXA010000022.1 Primary Assembly 39214 na Scaffold23_1 unplaced-scaffold na na JAVFXA010000023.1 = NZ_JAVFXA010000023.1 Primary Assembly 34887 na Scaffold24_1 unplaced-scaffold na na JAVFXA010000024.1 = NZ_JAVFXA010000024.1 Primary Assembly 28690 na Scaffold25_1 unplaced-scaffold na na JAVFXA010000025.1 = NZ_JAVFXA010000025.1 Primary Assembly 26937 na Scaffold26_1 unplaced-scaffold na na JAVFXA010000026.1 = NZ_JAVFXA010000026.1 Primary Assembly 24699 na Scaffold27_1 unplaced-scaffold na na JAVFXA010000027.1 = NZ_JAVFXA010000027.1 Primary Assembly 23802 na Scaffold28_1 unplaced-scaffold na na JAVFXA010000028.1 = NZ_JAVFXA010000028.1 Primary Assembly 16316 na Scaffold29_1 unplaced-scaffold na na JAVFXA010000029.1 = NZ_JAVFXA010000029.1 Primary Assembly 14145 na Scaffold30_1 unplaced-scaffold na na JAVFXA010000030.1 = NZ_JAVFXA010000030.1 Primary Assembly 13856 na Scaffold31_1 unplaced-scaffold na na JAVFXA010000031.1 = NZ_JAVFXA010000031.1 Primary Assembly 12197 na Scaffold32_1 unplaced-scaffold na na JAVFXA010000032.1 = NZ_JAVFXA010000032.1 Primary Assembly 11684 na Scaffold33_1 unplaced-scaffold na na JAVFXA010000033.1 = NZ_JAVFXA010000033.1 Primary Assembly 11141 na Scaffold34_1 unplaced-scaffold na na JAVFXA010000034.1 = NZ_JAVFXA010000034.1 Primary Assembly 11048 na Scaffold35_1 unplaced-scaffold na na JAVFXA010000035.1 = NZ_JAVFXA010000035.1 Primary Assembly 8773 na Scaffold36_1 unplaced-scaffold na na JAVFXA010000036.1 = NZ_JAVFXA010000036.1 Primary Assembly 5765 na Scaffold37_1 unplaced-scaffold na na JAVFXA010000037.1 = NZ_JAVFXA010000037.1 Primary Assembly 5099 na Scaffold38_1 unplaced-scaffold na na JAVFXA010000038.1 = NZ_JAVFXA010000038.1 Primary Assembly 3994 na Scaffold39_1 unplaced-scaffold na na JAVFXA010000039.1 = NZ_JAVFXA010000039.1 Primary Assembly 3952 na Scaffold40_1 unplaced-scaffold na na JAVFXA010000040.1 = NZ_JAVFXA010000040.1 Primary Assembly 2986 na Scaffold41_1 unplaced-scaffold na na JAVFXA010000041.1 = NZ_JAVFXA010000041.1 Primary Assembly 2255 na Scaffold42_1 unplaced-scaffold na na JAVFXA010000042.1 = NZ_JAVFXA010000042.1 Primary Assembly 1984 na Scaffold44_1 unplaced-scaffold na na JAVFXA010000043.1 = NZ_JAVFXA010000043.1 Primary Assembly 1910 na Scaffold45_1 unplaced-scaffold na na JAVFXA010000044.1 = NZ_JAVFXA010000044.1 Primary Assembly 1907 na Scaffold46_1 unplaced-scaffold na na JAVFXA010000045.1 = NZ_JAVFXA010000045.1 Primary Assembly 1642 na Scaffold47_1 unplaced-scaffold na na JAVFXA010000046.1 = NZ_JAVFXA010000046.1 Primary Assembly 1611 na Scaffold48_1 unplaced-scaffold na na JAVFXA010000047.1 = NZ_JAVFXA010000047.1 Primary Assembly 1550 na Scaffold49_1 unplaced-scaffold na na JAVFXA010000048.1 = NZ_JAVFXA010000048.1 Primary Assembly 1542 na Scaffold50_1 unplaced-scaffold na na JAVFXA010000049.1 = NZ_JAVFXA010000049.1 Primary Assembly 1535 na Scaffold51_1 unplaced-scaffold na na JAVFXA010000050.1 = NZ_JAVFXA010000050.1 Primary Assembly 1480 na Scaffold52_1 unplaced-scaffold na na JAVFXA010000051.1 = NZ_JAVFXA010000051.1 Primary Assembly 1442 na Scaffold53_1 unplaced-scaffold na na JAVFXA010000052.1 = NZ_JAVFXA010000052.1 Primary Assembly 1412 na Scaffold54_1 unplaced-scaffold na na JAVFXA010000053.1 = NZ_JAVFXA010000053.1 Primary Assembly 1407 na Scaffold55_1 unplaced-scaffold na na JAVFXA010000054.1 = NZ_JAVFXA010000054.1 Primary Assembly 1407 na Scaffold56_1 unplaced-scaffold na na JAVFXA010000055.1 = NZ_JAVFXA010000055.1 Primary Assembly 1389 na Scaffold59_1 unplaced-scaffold na na JAVFXA010000056.1 = NZ_JAVFXA010000056.1 Primary Assembly 1126 na Scaffold61_1 unplaced-scaffold na na JAVFXA010000057.1 = NZ_JAVFXA010000057.1 Primary Assembly 1111 na Scaffold65_1 unplaced-scaffold na na JAVFXA010000058.1 = NZ_JAVFXA010000058.1 Primary Assembly 1005 na Scaffold66_1 unplaced-scaffold na na JAVFXA010000059.1 = NZ_JAVFXA010000059.1 Primary Assembly 982 na Scaffold67_1 unplaced-scaffold na na JAVFXA010000060.1 = NZ_JAVFXA010000060.1 Primary Assembly 976 na Scaffold70_1 unplaced-scaffold na na JAVFXA010000061.1 = NZ_JAVFXA010000061.1 Primary Assembly 874 na Scaffold72_1 unplaced-scaffold na na JAVFXA010000062.1 = NZ_JAVFXA010000062.1 Primary Assembly 825 na Scaffold73_1 unplaced-scaffold na na JAVFXA010000063.1 = NZ_JAVFXA010000063.1 Primary Assembly 821 na Scaffold74_1 unplaced-scaffold na na JAVFXA010000064.1 = NZ_JAVFXA010000064.1 Primary Assembly 818 na Scaffold75_1 unplaced-scaffold na na JAVFXA010000065.1 = NZ_JAVFXA010000065.1 Primary Assembly 813 na Scaffold76_1 unplaced-scaffold na na JAVFXA010000066.1 = NZ_JAVFXA010000066.1 Primary Assembly 813 na Scaffold78_1 unplaced-scaffold na na JAVFXA010000067.1 = NZ_JAVFXA010000067.1 Primary Assembly 811 na Scaffold80_1 unplaced-scaffold na na JAVFXA010000068.1 = NZ_JAVFXA010000068.1 Primary Assembly 789 na Scaffold84_1 unplaced-scaffold na na JAVFXA010000069.1 = NZ_JAVFXA010000069.1 Primary Assembly 765 na Scaffold85_1 unplaced-scaffold na na JAVFXA010000070.1 = NZ_JAVFXA010000070.1 Primary Assembly 761 na Scaffold87_1 unplaced-scaffold na na JAVFXA010000071.1 = NZ_JAVFXA010000071.1 Primary Assembly 737 na Scaffold90_1 unplaced-scaffold na na JAVFXA010000072.1 = NZ_JAVFXA010000072.1 Primary Assembly 722 na Scaffold93_1 unplaced-scaffold na na JAVFXA010000073.1 = NZ_JAVFXA010000073.1 Primary Assembly 707 na Scaffold96_1 unplaced-scaffold na na JAVFXA010000074.1 = NZ_JAVFXA010000074.1 Primary Assembly 697 na Scaffold106_1 unplaced-scaffold na na JAVFXA010000075.1 = NZ_JAVFXA010000075.1 Primary Assembly 659 na Scaffold113_1 unplaced-scaffold na na JAVFXA010000076.1 = NZ_JAVFXA010000076.1 Primary Assembly 639 na Scaffold114_1 unplaced-scaffold na na JAVFXA010000077.1 = NZ_JAVFXA010000077.1 Primary Assembly 636 na Scaffold117_1 unplaced-scaffold na na JAVFXA010000078.1 = NZ_JAVFXA010000078.1 Primary Assembly 632 na Scaffold119_1 unplaced-scaffold na na JAVFXA010000079.1 = NZ_JAVFXA010000079.1 Primary Assembly 615 na Scaffold124_1 unplaced-scaffold na na JAVFXA010000080.1 = NZ_JAVFXA010000080.1 Primary Assembly 608 na Scaffold125_1 unplaced-scaffold na na JAVFXA010000081.1 = NZ_JAVFXA010000081.1 Primary Assembly 607 na Scaffold128_1 unplaced-scaffold na na JAVFXA010000082.1 = NZ_JAVFXA010000082.1 Primary Assembly 600 na Scaffold129_1 unplaced-scaffold na na JAVFXA010000083.1 = NZ_JAVFXA010000083.1 Primary Assembly 600 na Scaffold130_1 unplaced-scaffold na na JAVFXA010000084.1 = NZ_JAVFXA010000084.1 Primary Assembly 599 na Scaffold131_1 unplaced-scaffold na na JAVFXA010000085.1 = NZ_JAVFXA010000085.1 Primary Assembly 598 na Scaffold132_1 unplaced-scaffold na na JAVFXA010000086.1 = NZ_JAVFXA010000086.1 Primary Assembly 596 na Scaffold134_1 unplaced-scaffold na na JAVFXA010000087.1 = NZ_JAVFXA010000087.1 Primary Assembly 588 na Scaffold135_1 unplaced-scaffold na na JAVFXA010000088.1 = NZ_JAVFXA010000088.1 Primary Assembly 587 na Scaffold142_1 unplaced-scaffold na na JAVFXA010000089.1 = NZ_JAVFXA010000089.1 Primary Assembly 582 na Scaffold146_1 unplaced-scaffold na na JAVFXA010000090.1 = NZ_JAVFXA010000090.1 Primary Assembly 578 na Scaffold147_1 unplaced-scaffold na na JAVFXA010000091.1 = NZ_JAVFXA010000091.1 Primary Assembly 573 na Scaffold149_1 unplaced-scaffold na na JAVFXA010000092.1 = NZ_JAVFXA010000092.1 Primary Assembly 572 na Scaffold153_1 unplaced-scaffold na na JAVFXA010000093.1 = NZ_JAVFXA010000093.1 Primary Assembly 562 na Scaffold156_1 unplaced-scaffold na na JAVFXA010000094.1 = NZ_JAVFXA010000094.1 Primary Assembly 560 na Scaffold157_1 unplaced-scaffold na na JAVFXA010000095.1 = NZ_JAVFXA010000095.1 Primary Assembly 560 na Scaffold158_1 unplaced-scaffold na na JAVFXA010000096.1 = NZ_JAVFXA010000096.1 Primary Assembly 559 na Scaffold165_1 unplaced-scaffold na na JAVFXA010000097.1 = NZ_JAVFXA010000097.1 Primary Assembly 554 na Scaffold166_1 unplaced-scaffold na na JAVFXA010000098.1 = NZ_JAVFXA010000098.1 Primary Assembly 554 na Scaffold167_1 unplaced-scaffold na na JAVFXA010000099.1 = NZ_JAVFXA010000099.1 Primary Assembly 553 na Scaffold169_1 unplaced-scaffold na na JAVFXA010000100.1 = NZ_JAVFXA010000100.1 Primary Assembly 551 na Scaffold176_1 unplaced-scaffold na na JAVFXA010000101.1 = NZ_JAVFXA010000101.1 Primary Assembly 541 na Scaffold178_1 unplaced-scaffold na na JAVFXA010000102.1 = NZ_JAVFXA010000102.1 Primary Assembly 538 na Scaffold179_1 unplaced-scaffold na na JAVFXA010000103.1 = NZ_JAVFXA010000103.1 Primary Assembly 538 na Scaffold182_1 unplaced-scaffold na na JAVFXA010000104.1 = NZ_JAVFXA010000104.1 Primary Assembly 535 na Scaffold184_1 unplaced-scaffold na na JAVFXA010000105.1 = NZ_JAVFXA010000105.1 Primary Assembly 534 na Scaffold186_1 unplaced-scaffold na na JAVFXA010000106.1 = NZ_JAVFXA010000106.1 Primary Assembly 534 na Scaffold188_1 unplaced-scaffold na na JAVFXA010000107.1 = NZ_JAVFXA010000107.1 Primary Assembly 534 na Scaffold189_1 unplaced-scaffold na na JAVFXA010000108.1 = NZ_JAVFXA010000108.1 Primary Assembly 533 na Scaffold190_1 unplaced-scaffold na na JAVFXA010000109.1 = NZ_JAVFXA010000109.1 Primary Assembly 533 na Scaffold191_1 unplaced-scaffold na na JAVFXA010000110.1 = NZ_JAVFXA010000110.1 Primary Assembly 532 na Scaffold195_1 unplaced-scaffold na na JAVFXA010000111.1 = NZ_JAVFXA010000111.1 Primary Assembly 528 na Scaffold196_1 unplaced-scaffold na na JAVFXA010000112.1 = NZ_JAVFXA010000112.1 Primary Assembly 527 na Scaffold198_1 unplaced-scaffold na na JAVFXA010000113.1 = NZ_JAVFXA010000113.1 Primary Assembly 527 na Scaffold199_1 unplaced-scaffold na na JAVFXA010000114.1 = NZ_JAVFXA010000114.1 Primary Assembly 527 na Scaffold204_1 unplaced-scaffold na na JAVFXA010000115.1 = NZ_JAVFXA010000115.1 Primary Assembly 524 na Scaffold206_1 unplaced-scaffold na na JAVFXA010000116.1 = NZ_JAVFXA010000116.1 Primary Assembly 523 na Scaffold207_1 unplaced-scaffold na na JAVFXA010000117.1 = NZ_JAVFXA010000117.1 Primary Assembly 522 na Scaffold210_1 unplaced-scaffold na na JAVFXA010000118.1 = NZ_JAVFXA010000118.1 Primary Assembly 521 na Scaffold212_1 unplaced-scaffold na na JAVFXA010000119.1 = NZ_JAVFXA010000119.1 Primary Assembly 519 na Scaffold213_1 unplaced-scaffold na na JAVFXA010000120.1 = NZ_JAVFXA010000120.1 Primary Assembly 518 na Scaffold219_1 unplaced-scaffold na na JAVFXA010000121.1 = NZ_JAVFXA010000121.1 Primary Assembly 515 na Scaffold220_1 unplaced-scaffold na na JAVFXA010000122.1 = NZ_JAVFXA010000122.1 Primary Assembly 515 na Scaffold222_1 unplaced-scaffold na na JAVFXA010000123.1 = NZ_JAVFXA010000123.1 Primary Assembly 513 na Scaffold224_1 unplaced-scaffold na na JAVFXA010000124.1 = NZ_JAVFXA010000124.1 Primary Assembly 512 na Scaffold228_1 unplaced-scaffold na na JAVFXA010000125.1 = NZ_JAVFXA010000125.1 Primary Assembly 511 na Scaffold238_1 unplaced-scaffold na na JAVFXA010000126.1 = NZ_JAVFXA010000126.1 Primary Assembly 504 na Scaffold239_1 unplaced-scaffold na na JAVFXA010000127.1 = NZ_JAVFXA010000127.1 Primary Assembly 503 na