# Assembly name: ASM4119757v1 # Organism name: Thioalkalicoccus limnaeus (g-proteobacteria) # Infraspecific name: strain=Um2 # Taxid: 120681 # BioSample: SAMN41250912 # BioProject: PRJNA1108746 # Submitter: Bellevue University # Date: 2024-08-09 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JBDKXB01 # Assembly method: Unicycler v. 0.4.8 # Expected final version: yes # Genome coverage: 159.0x # Sequencing technology: Illumina MiSeq # Relation to type material: assembly designated as neotype # RefSeq category: Reference Genome # GenBank assembly accession: GCA_041197575.1 # RefSeq assembly accession: GCF_041197575.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_041197595.1 GCF_041197595.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name assembly_contig_1 unplaced-scaffold na na JBDKXB010000001.1 = NZ_JBDKXB010000001.1 Primary Assembly 322927 na assembly_contig_2 unplaced-scaffold na na JBDKXB010000002.1 = NZ_JBDKXB010000002.1 Primary Assembly 295051 na assembly_contig_3 unplaced-scaffold na na JBDKXB010000003.1 = NZ_JBDKXB010000003.1 Primary Assembly 284440 na assembly_contig_4 unplaced-scaffold na na JBDKXB010000004.1 = NZ_JBDKXB010000004.1 Primary Assembly 275222 na assembly_contig_5 unplaced-scaffold na na JBDKXB010000005.1 = NZ_JBDKXB010000005.1 Primary Assembly 247360 na assembly_contig_6 unplaced-scaffold na na JBDKXB010000006.1 = NZ_JBDKXB010000006.1 Primary Assembly 162563 na assembly_contig_7 unplaced-scaffold na na JBDKXB010000007.1 = NZ_JBDKXB010000007.1 Primary Assembly 157353 na assembly_contig_8 unplaced-scaffold na na JBDKXB010000008.1 = NZ_JBDKXB010000008.1 Primary Assembly 129152 na assembly_contig_9 unplaced-scaffold na na JBDKXB010000009.1 = NZ_JBDKXB010000009.1 Primary Assembly 125740 na assembly_contig_10 unplaced-scaffold na na JBDKXB010000010.1 = NZ_JBDKXB010000010.1 Primary Assembly 122180 na assembly_contig_11 unplaced-scaffold na na JBDKXB010000011.1 = NZ_JBDKXB010000011.1 Primary Assembly 105944 na assembly_contig_12 unplaced-scaffold na na JBDKXB010000012.1 = NZ_JBDKXB010000012.1 Primary Assembly 100964 na assembly_contig_13 unplaced-scaffold na na JBDKXB010000013.1 = NZ_JBDKXB010000013.1 Primary Assembly 95661 na assembly_contig_14 unplaced-scaffold na na JBDKXB010000014.1 = NZ_JBDKXB010000014.1 Primary Assembly 89517 na assembly_contig_15 unplaced-scaffold na na JBDKXB010000015.1 = NZ_JBDKXB010000015.1 Primary Assembly 85273 na assembly_contig_16 unplaced-scaffold na na JBDKXB010000016.1 = NZ_JBDKXB010000016.1 Primary Assembly 75938 na assembly_contig_17 unplaced-scaffold na na JBDKXB010000017.1 = NZ_JBDKXB010000017.1 Primary Assembly 73065 na assembly_contig_18 unplaced-scaffold na na JBDKXB010000018.1 = NZ_JBDKXB010000018.1 Primary Assembly 63283 na assembly_contig_19 unplaced-scaffold na na JBDKXB010000019.1 = NZ_JBDKXB010000019.1 Primary Assembly 59289 na assembly_contig_20 unplaced-scaffold na na JBDKXB010000020.1 = NZ_JBDKXB010000020.1 Primary Assembly 58539 na assembly_contig_21 unplaced-scaffold na na JBDKXB010000021.1 = NZ_JBDKXB010000021.1 Primary Assembly 55513 na assembly_contig_22 unplaced-scaffold na na JBDKXB010000022.1 = NZ_JBDKXB010000022.1 Primary Assembly 55395 na assembly_contig_23 unplaced-scaffold na na JBDKXB010000023.1 = NZ_JBDKXB010000023.1 Primary Assembly 55094 na assembly_contig_24 unplaced-scaffold na na JBDKXB010000024.1 = NZ_JBDKXB010000024.1 Primary Assembly 54115 na assembly_contig_25 unplaced-scaffold na na JBDKXB010000025.1 = NZ_JBDKXB010000025.1 Primary Assembly 54079 na assembly_contig_26 unplaced-scaffold na na JBDKXB010000026.1 = NZ_JBDKXB010000026.1 Primary Assembly 48515 na assembly_contig_27 unplaced-scaffold na na JBDKXB010000027.1 = NZ_JBDKXB010000027.1 Primary Assembly 44989 na assembly_contig_28 unplaced-scaffold na na JBDKXB010000028.1 = NZ_JBDKXB010000028.1 Primary Assembly 42200 na assembly_contig_29 unplaced-scaffold na na JBDKXB010000029.1 = NZ_JBDKXB010000029.1 Primary Assembly 38576 na assembly_contig_30 unplaced-scaffold na na JBDKXB010000030.1 = NZ_JBDKXB010000030.1 Primary Assembly 34468 na assembly_contig_31 unplaced-scaffold na na JBDKXB010000031.1 = NZ_JBDKXB010000031.1 Primary Assembly 32343 na assembly_contig_32 unplaced-scaffold na na JBDKXB010000032.1 = NZ_JBDKXB010000032.1 Primary Assembly 32203 na assembly_contig_33 unplaced-scaffold na na JBDKXB010000033.1 = NZ_JBDKXB010000033.1 Primary Assembly 31956 na assembly_contig_34 unplaced-scaffold na na JBDKXB010000034.1 = NZ_JBDKXB010000034.1 Primary Assembly 28282 na assembly_contig_35 unplaced-scaffold na na JBDKXB010000035.1 = NZ_JBDKXB010000035.1 Primary Assembly 26908 na assembly_contig_36 unplaced-scaffold na na JBDKXB010000036.1 = NZ_JBDKXB010000036.1 Primary Assembly 24741 na assembly_contig_37 unplaced-scaffold na na JBDKXB010000037.1 = NZ_JBDKXB010000037.1 Primary Assembly 24070 na assembly_contig_38 unplaced-scaffold na na JBDKXB010000038.1 = NZ_JBDKXB010000038.1 Primary Assembly 24032 na assembly_contig_39 unplaced-scaffold na na JBDKXB010000039.1 = NZ_JBDKXB010000039.1 Primary Assembly 22375 na assembly_contig_40 unplaced-scaffold na na JBDKXB010000040.1 = NZ_JBDKXB010000040.1 Primary Assembly 19709 na assembly_contig_41 unplaced-scaffold na na JBDKXB010000041.1 = NZ_JBDKXB010000041.1 Primary Assembly 19143 na assembly_contig_42 unplaced-scaffold na na JBDKXB010000042.1 = NZ_JBDKXB010000042.1 Primary Assembly 16863 na assembly_contig_43 unplaced-scaffold na na JBDKXB010000043.1 = NZ_JBDKXB010000043.1 Primary Assembly 16782 na assembly_contig_44 unplaced-scaffold na na JBDKXB010000044.1 = NZ_JBDKXB010000044.1 Primary Assembly 16577 na assembly_contig_45 unplaced-scaffold na na JBDKXB010000045.1 = NZ_JBDKXB010000045.1 Primary Assembly 15349 na assembly_contig_46 unplaced-scaffold na na JBDKXB010000046.1 = NZ_JBDKXB010000046.1 Primary Assembly 14568 na assembly_contig_47 unplaced-scaffold na na JBDKXB010000047.1 = NZ_JBDKXB010000047.1 Primary Assembly 13663 na assembly_contig_48 unplaced-scaffold na na JBDKXB010000048.1 = NZ_JBDKXB010000048.1 Primary Assembly 12385 na assembly_contig_49 unplaced-scaffold na na JBDKXB010000049.1 = NZ_JBDKXB010000049.1 Primary Assembly 11933 na assembly_contig_50 unplaced-scaffold na na JBDKXB010000050.1 = NZ_JBDKXB010000050.1 Primary Assembly 11809 na assembly_contig_51 unplaced-scaffold na na JBDKXB010000051.1 = NZ_JBDKXB010000051.1 Primary Assembly 8883 na assembly_contig_52 unplaced-scaffold na na JBDKXB010000052.1 = NZ_JBDKXB010000052.1 Primary Assembly 7547 na assembly_contig_53 unplaced-scaffold na na JBDKXB010000053.1 = NZ_JBDKXB010000053.1 Primary Assembly 6336 na assembly_contig_54 unplaced-scaffold na na JBDKXB010000054.1 = NZ_JBDKXB010000054.1 Primary Assembly 5452 na assembly_contig_55 unplaced-scaffold na na JBDKXB010000055.1 = NZ_JBDKXB010000055.1 Primary Assembly 5339 na assembly_contig_56 unplaced-scaffold na na JBDKXB010000056.1 = NZ_JBDKXB010000056.1 Primary Assembly 5294 na assembly_contig_57 unplaced-scaffold na na JBDKXB010000057.1 = NZ_JBDKXB010000057.1 Primary Assembly 4776 na assembly_contig_58 unplaced-scaffold na na JBDKXB010000058.1 = NZ_JBDKXB010000058.1 Primary Assembly 3982 na assembly_contig_59 unplaced-scaffold na na JBDKXB010000059.1 = NZ_JBDKXB010000059.1 Primary Assembly 3724 na assembly_contig_60 unplaced-scaffold na na JBDKXB010000060.1 = NZ_JBDKXB010000060.1 Primary Assembly 3595 na assembly_contig_61 unplaced-scaffold na na JBDKXB010000061.1 = NZ_JBDKXB010000061.1 Primary Assembly 3042 na assembly_contig_62 unplaced-scaffold na na JBDKXB010000062.1 = NZ_JBDKXB010000062.1 Primary Assembly 2844 na assembly_contig_63 unplaced-scaffold na na JBDKXB010000063.1 = NZ_JBDKXB010000063.1 Primary Assembly 2685 na assembly_contig_64 unplaced-scaffold na na JBDKXB010000064.1 = NZ_JBDKXB010000064.1 Primary Assembly 2601 na assembly_contig_65 unplaced-scaffold na na JBDKXB010000065.1 = NZ_JBDKXB010000065.1 Primary Assembly 2521 na assembly_contig_66 unplaced-scaffold na na JBDKXB010000066.1 = NZ_JBDKXB010000066.1 Primary Assembly 2271 na assembly_contig_67 unplaced-scaffold na na JBDKXB010000067.1 = NZ_JBDKXB010000067.1 Primary Assembly 1931 na assembly_contig_68 unplaced-scaffold na na JBDKXB010000068.1 = NZ_JBDKXB010000068.1 Primary Assembly 1844 na assembly_contig_69 unplaced-scaffold na na JBDKXB010000069.1 = NZ_JBDKXB010000069.1 Primary Assembly 1817 na assembly_contig_70 unplaced-scaffold na na JBDKXB010000070.1 = NZ_JBDKXB010000070.1 Primary Assembly 1724 na assembly_contig_71 unplaced-scaffold na na JBDKXB010000071.1 = NZ_JBDKXB010000071.1 Primary Assembly 1560 na assembly_contig_72 unplaced-scaffold na na JBDKXB010000072.1 = NZ_JBDKXB010000072.1 Primary Assembly 1389 na assembly_contig_73 unplaced-scaffold na na JBDKXB010000073.1 = NZ_JBDKXB010000073.1 Primary Assembly 1380 na assembly_contig_74 unplaced-scaffold na na JBDKXB010000074.1 = NZ_JBDKXB010000074.1 Primary Assembly 1259 na assembly_contig_75 unplaced-scaffold na na JBDKXB010000075.1 = NZ_JBDKXB010000075.1 Primary Assembly 1205 na assembly_contig_76 unplaced-scaffold na na JBDKXB010000076.1 = NZ_JBDKXB010000076.1 Primary Assembly 1194 na assembly_contig_77 unplaced-scaffold na na JBDKXB010000077.1 = NZ_JBDKXB010000077.1 Primary Assembly 1053 na assembly_contig_78 unplaced-scaffold na na JBDKXB010000078.1 = NZ_JBDKXB010000078.1 Primary Assembly 967 na assembly_contig_79 unplaced-scaffold na na JBDKXB010000079.1 = NZ_JBDKXB010000079.1 Primary Assembly 907 na assembly_contig_80 unplaced-scaffold na na JBDKXB010000080.1 = NZ_JBDKXB010000080.1 Primary Assembly 798 na assembly_contig_81 unplaced-scaffold na na JBDKXB010000081.1 = NZ_JBDKXB010000081.1 Primary Assembly 782 na assembly_contig_82 unplaced-scaffold na na JBDKXB010000082.1 = NZ_JBDKXB010000082.1 Primary Assembly 754 na assembly_contig_83 unplaced-scaffold na na JBDKXB010000083.1 = NZ_JBDKXB010000083.1 Primary Assembly 748 na assembly_contig_84 unplaced-scaffold na na JBDKXB010000084.1 = NZ_JBDKXB010000084.1 Primary Assembly 735 na assembly_contig_85 unplaced-scaffold na na JBDKXB010000085.1 = NZ_JBDKXB010000085.1 Primary Assembly 724 na assembly_contig_86 unplaced-scaffold na na JBDKXB010000086.1 = NZ_JBDKXB010000086.1 Primary Assembly 658 na assembly_contig_87 unplaced-scaffold na na JBDKXB010000087.1 = NZ_JBDKXB010000087.1 Primary Assembly 656 na assembly_contig_88 unplaced-scaffold na na JBDKXB010000088.1 = NZ_JBDKXB010000088.1 Primary Assembly 556 na assembly_contig_89 unplaced-scaffold na na JBDKXB010000089.1 = NZ_JBDKXB010000089.1 Primary Assembly 464 na assembly_contig_90 unplaced-scaffold na na JBDKXB010000090.1 = NZ_JBDKXB010000090.1 Primary Assembly 442 na assembly_contig_91 unplaced-scaffold na na JBDKXB010000091.1 = NZ_JBDKXB010000091.1 Primary Assembly 442 na assembly_contig_92 unplaced-scaffold na na JBDKXB010000092.1 = NZ_JBDKXB010000092.1 Primary Assembly 414 na assembly_contig_93 unplaced-scaffold na na JBDKXB010000093.1 = NZ_JBDKXB010000093.1 Primary Assembly 391 na assembly_contig_94 unplaced-scaffold na na JBDKXB010000094.1 = NZ_JBDKXB010000094.1 Primary Assembly 349 na assembly_contig_95 unplaced-scaffold na na JBDKXB010000095.1 = NZ_JBDKXB010000095.1 Primary Assembly 343 na assembly_contig_96 unplaced-scaffold na na JBDKXB010000096.1 = NZ_JBDKXB010000096.1 Primary Assembly 341 na assembly_contig_97 unplaced-scaffold na na JBDKXB010000097.1 = NZ_JBDKXB010000097.1 Primary Assembly 316 na assembly_contig_98 unplaced-scaffold na na JBDKXB010000098.1 = NZ_JBDKXB010000098.1 Primary Assembly 300 na