# Assembly name:  bLonStr1.mat
# Organism name:  Lonchura striata (white-rumped munia)
# Isolate:  bLonStr1
# Sex:  male
# Taxid:          40157
# BioSample:      SAMN44779081
# BioProject:     PRJNA1186962
# Submitter:      Vertebrate Genomes Project
# Date:           2024-12-18
# Assembly type:  haploid (maternal haplotype of diploid)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    JBJHRQ01
# Assembly method: Hifiasm + Hi-C phasing v. 0.19.9 + galaxy0; yahs v. 1.2a.2 + galaxy1
# Expected final version: no
# Genome coverage: 69.0x
# Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_046129695.1
# RefSeq assembly accession: GCF_046129695.1
# RefSeq assembly and GenBank assemblies identical: no
# Linked assembly: GCA_046129705.1 (paternal haplotype of diploid)
#
## Assembly-Units:
## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
## GCA_046129745.1	GCF_046129745.1	Primary Assembly
## 	GCF_002205695.1	non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
SUPER_1	assembled-molecule	1	Chromosome	CM100612.1	=	NC_134603.1	Primary Assembly	157315129	na
SUPER_2	assembled-molecule	2	Chromosome	CM100613.1	=	NC_134604.1	Primary Assembly	117569463	na
SUPER_3	assembled-molecule	3	Chromosome	CM100614.1	=	NC_134605.1	Primary Assembly	113993779	na
SUPER_4	assembled-molecule	4	Chromosome	CM100615.1	=	NC_134606.1	Primary Assembly	76977286	na
SUPER_5	assembled-molecule	5	Chromosome	CM100616.1	=	NC_134607.1	Primary Assembly	73424396	na
SUPER_6	assembled-molecule	6	Chromosome	CM100617.1	=	NC_134608.1	Primary Assembly	70844820	na
SUPER_7	assembled-molecule	7	Chromosome	CM100618.1	=	NC_134609.1	Primary Assembly	40407389	na
SUPER_8	assembled-molecule	8	Chromosome	CM100619.1	=	NC_134610.1	Primary Assembly	40362602	na
SUPER_9	assembled-molecule	9	Chromosome	CM100620.1	=	NC_134611.1	Primary Assembly	30234567	na
SUPER_10	assembled-molecule	10	Chromosome	CM100621.1	=	NC_134612.1	Primary Assembly	27298692	na
SUPER_11	assembled-molecule	11	Chromosome	CM100622.1	=	NC_134613.1	Primary Assembly	24801325	na
SUPER_12	assembled-molecule	12	Chromosome	CM100623.1	=	NC_134614.1	Primary Assembly	24353675	na
SUPER_13	assembled-molecule	13	Chromosome	CM100624.1	=	NC_134615.1	Primary Assembly	23994805	na
SUPER_14	assembled-molecule	14	Chromosome	CM100625.1	=	NC_134616.1	Primary Assembly	21850736	na
SUPER_15	assembled-molecule	15	Chromosome	CM100626.1	=	NC_134617.1	Primary Assembly	19856986	na
SUPER_16	assembled-molecule	16	Chromosome	CM100627.1	=	NC_134618.1	Primary Assembly	17873874	na
SUPER_17	assembled-molecule	17	Chromosome	CM100628.1	=	NC_134619.1	Primary Assembly	15904283	na
SUPER_18	assembled-molecule	18	Chromosome	CM100629.1	=	NC_134620.1	Primary Assembly	15433448	na
SUPER_19	assembled-molecule	19	Chromosome	CM100630.1	=	NC_134621.1	Primary Assembly	12897437	na
SUPER_20	assembled-molecule	20	Chromosome	CM100631.1	=	NC_134622.1	Primary Assembly	12119265	na
SUPER_21	assembled-molecule	21	Chromosome	CM100632.1	=	NC_134623.1	Primary Assembly	11558188	na
SUPER_22	assembled-molecule	22	Chromosome	CM100633.1	=	NC_134624.1	Primary Assembly	11412281	na
SUPER_23	assembled-molecule	23	Chromosome	CM100634.1	=	NC_134625.1	Primary Assembly	11233015	na
SUPER_24	assembled-molecule	24	Chromosome	CM100635.1	=	NC_134626.1	Primary Assembly	10279328	na
SUPER_25	assembled-molecule	25	Chromosome	CM100636.1	=	NC_134627.1	Primary Assembly	9989107	na
SUPER_26	assembled-molecule	26	Chromosome	CM100637.1	=	NC_134628.1	Primary Assembly	9651691	na
SUPER_27	assembled-molecule	27	Chromosome	CM100638.1	=	NC_134629.1	Primary Assembly	9530130	na
SUPER_28	assembled-molecule	28	Chromosome	CM100639.1	=	NC_134630.1	Primary Assembly	8652657	na
SUPER_29	assembled-molecule	29	Chromosome	CM100640.1	=	NC_134631.1	Primary Assembly	7830199	na
SUPER_30	assembled-molecule	30	Chromosome	CM100641.1	=	NC_134632.1	Primary Assembly	6699845	na
SUPER_31	assembled-molecule	31	Chromosome	CM100642.1	=	NC_134633.1	Primary Assembly	6571379	na
SUPER_32	assembled-molecule	32	Chromosome	CM100643.1	=	NC_134634.1	Primary Assembly	6452742	na
SUPER_33	assembled-molecule	33	Chromosome	CM100644.1	=	NC_134635.1	Primary Assembly	6004506	na
SUPER_34	assembled-molecule	34	Chromosome	CM100645.1	=	NC_134636.1	Primary Assembly	5263211	na
SUPER_35	assembled-molecule	35	Chromosome	CM100646.1	=	NC_134637.1	Primary Assembly	5182662	na
SUPER_36	assembled-molecule	36	Chromosome	CM100647.1	=	NC_134638.1	Primary Assembly	3935492	na
SUPER_37	assembled-molecule	37	Chromosome	CM100648.1	=	NC_134639.1	Primary Assembly	3588607	na
SUPER_38	assembled-molecule	38	Chromosome	CM100649.1	=	NC_134640.1	Primary Assembly	3429855	na
SUPER_39	assembled-molecule	39	Chromosome	CM100650.1	=	NC_134641.1	Primary Assembly	1279623	na
SUPER_Z	assembled-molecule	Z	Chromosome	CM100651.1	=	NC_134642.1	Primary Assembly	86666777	na
SUPER_12_unloc_1	unlocalized-scaffold	12	Chromosome	JBJHRQ010000061.1	=	NW_027461073.1	Primary Assembly	626571	na
SUPER_14_unloc_1	unlocalized-scaffold	14	Chromosome	JBJHRQ010000069.1	=	NW_027461074.1	Primary Assembly	465229	na
SUPER_14_unloc_2	unlocalized-scaffold	14	Chromosome	JBJHRQ010000070.1	=	NW_027461075.1	Primary Assembly	398555	na
SUPER_Z_unloc_1	unlocalized-scaffold	Z	Chromosome	JBJHRQ010000060.1	=	NW_027461076.1	Primary Assembly	639713	na
Scaffold_82	unplaced-scaffold	na	na	JBJHRQ010000036.1	=	NW_027461187.1	Primary Assembly	5226282	na
Scaffold_85	unplaced-scaffold	na	na	JBJHRQ010000041.1	=	NW_027461188.1	Primary Assembly	2424353	na
Scaffold_90	unplaced-scaffold	na	na	JBJHRQ010000042.1	=	NW_027461189.1	Primary Assembly	1872588	na
Scaffold_91	unplaced-scaffold	na	na	JBJHRQ010000043.1	=	NW_027461190.1	Primary Assembly	1717428	na
Scaffold_92	unplaced-scaffold	na	na	JBJHRQ010000044.1	=	NW_027461191.1	Primary Assembly	1475932	na
Scaffold_97	unplaced-scaffold	na	na	JBJHRQ010000045.1	=	NW_027461192.1	Primary Assembly	1282472	na
Scaffold_99	unplaced-scaffold	na	na	JBJHRQ010000047.1	=	NW_027461193.1	Primary Assembly	1225168	na
Scaffold_100	unplaced-scaffold	na	na	JBJHRQ010000048.1	=	NW_027461077.1	Primary Assembly	1216534	na
Scaffold_106	unplaced-scaffold	na	na	JBJHRQ010000049.1	=	NW_027461078.1	Primary Assembly	988764	na
Scaffold_109	unplaced-scaffold	na	na	JBJHRQ010000050.1	=	NW_027461079.1	Primary Assembly	871734	na
Scaffold_111	unplaced-scaffold	na	na	JBJHRQ010000051.1	=	NW_027461080.1	Primary Assembly	862484	na
Scaffold_113	unplaced-scaffold	na	na	JBJHRQ010000052.1	=	NW_027461081.1	Primary Assembly	846873	na
Scaffold_114	unplaced-scaffold	na	na	JBJHRQ010000053.1	=	NW_027461082.1	Primary Assembly	804502	na
Scaffold_115	unplaced-scaffold	na	na	JBJHRQ010000054.1	=	NW_027461083.1	Primary Assembly	804323	na
Scaffold_116	unplaced-scaffold	na	na	JBJHRQ010000055.1	=	NW_027461084.1	Primary Assembly	801386	na
Scaffold_117	unplaced-scaffold	na	na	JBJHRQ010000056.1	=	NW_027461085.1	Primary Assembly	770528	na
Scaffold_118	unplaced-scaffold	na	na	JBJHRQ010000057.1	=	NW_027461086.1	Primary Assembly	753232	na
Scaffold_121	unplaced-scaffold	na	na	JBJHRQ010000058.1	=	NW_027461087.1	Primary Assembly	724234	na
Scaffold_123	unplaced-scaffold	na	na	JBJHRQ010000059.1	=	NW_027461088.1	Primary Assembly	698366	na
Scaffold_125	unplaced-scaffold	na	na	JBJHRQ010000062.1	=	NW_027461089.1	Primary Assembly	610498	na
Scaffold_126	unplaced-scaffold	na	na	JBJHRQ010000063.1	=	NW_027461090.1	Primary Assembly	605677	na
Scaffold_127	unplaced-scaffold	na	na	JBJHRQ010000064.1	=	NW_027461091.1	Primary Assembly	581720	na
Scaffold_131	unplaced-scaffold	na	na	JBJHRQ010000065.1	=	NW_027461092.1	Primary Assembly	539501	na
Scaffold_81	unplaced-scaffold	na	na	JBJHRQ010000066.1	=	NW_027461186.1	Primary Assembly	527248	na
Scaffold_132	unplaced-scaffold	na	na	JBJHRQ010000067.1	=	NW_027461093.1	Primary Assembly	514622	na
Scaffold_133	unplaced-scaffold	na	na	JBJHRQ010000068.1	=	NW_027461094.1	Primary Assembly	511435	na
Scaffold_144	unplaced-scaffold	na	na	JBJHRQ010000071.1	=	NW_027461095.1	Primary Assembly	366112	na
Scaffold_145	unplaced-scaffold	na	na	JBJHRQ010000072.1	=	NW_027461096.1	Primary Assembly	363106	na
Scaffold_147	unplaced-scaffold	na	na	JBJHRQ010000073.1	=	NW_027461097.1	Primary Assembly	346551	na
Scaffold_149	unplaced-scaffold	na	na	JBJHRQ010000074.1	=	NW_027461098.1	Primary Assembly	345021	na
Scaffold_150	unplaced-scaffold	na	na	JBJHRQ010000075.1	=	NW_027461099.1	Primary Assembly	325035	na
Scaffold_151	unplaced-scaffold	na	na	JBJHRQ010000076.1	=	NW_027461100.1	Primary Assembly	322914	na
Scaffold_154	unplaced-scaffold	na	na	JBJHRQ010000077.1	=	NW_027461101.1	Primary Assembly	294084	na
Scaffold_156	unplaced-scaffold	na	na	JBJHRQ010000078.1	=	NW_027461102.1	Primary Assembly	292877	na
Scaffold_157	unplaced-scaffold	na	na	JBJHRQ010000079.1	=	NW_027461103.1	Primary Assembly	292345	na
Scaffold_159	unplaced-scaffold	na	na	JBJHRQ010000080.1	=	NW_027461104.1	Primary Assembly	279843	na
Scaffold_161	unplaced-scaffold	na	na	JBJHRQ010000081.1	=	NW_027461105.1	Primary Assembly	275390	na
Scaffold_162	unplaced-scaffold	na	na	JBJHRQ010000082.1	=	NW_027461106.1	Primary Assembly	273585	na
Scaffold_165	unplaced-scaffold	na	na	JBJHRQ010000083.1	=	NW_027461107.1	Primary Assembly	265647	na
Scaffold_166	unplaced-scaffold	na	na	JBJHRQ010000084.1	=	NW_027461108.1	Primary Assembly	265643	na
Scaffold_167	unplaced-scaffold	na	na	JBJHRQ010000085.1	=	NW_027461109.1	Primary Assembly	264612	na
Scaffold_169	unplaced-scaffold	na	na	JBJHRQ010000086.1	=	NW_027461110.1	Primary Assembly	261062	na
Scaffold_170	unplaced-scaffold	na	na	JBJHRQ010000087.1	=	NW_027461111.1	Primary Assembly	258963	na
Scaffold_172	unplaced-scaffold	na	na	JBJHRQ010000088.1	=	NW_027461112.1	Primary Assembly	248540	na
Scaffold_175	unplaced-scaffold	na	na	JBJHRQ010000089.1	=	NW_027461113.1	Primary Assembly	236816	na
Scaffold_177	unplaced-scaffold	na	na	JBJHRQ010000090.1	=	NW_027461114.1	Primary Assembly	234478	na
Scaffold_179	unplaced-scaffold	na	na	JBJHRQ010000091.1	=	NW_027461115.1	Primary Assembly	231838	na
Scaffold_181	unplaced-scaffold	na	na	JBJHRQ010000092.1	=	NW_027461116.1	Primary Assembly	228369	na
Scaffold_183	unplaced-scaffold	na	na	JBJHRQ010000093.1	=	NW_027461117.1	Primary Assembly	226087	na
Scaffold_185	unplaced-scaffold	na	na	JBJHRQ010000094.1	=	NW_027461118.1	Primary Assembly	222934	na
Scaffold_186	unplaced-scaffold	na	na	JBJHRQ010000095.1	=	NW_027461119.1	Primary Assembly	222690	na
Scaffold_187	unplaced-scaffold	na	na	JBJHRQ010000096.1	=	NW_027461120.1	Primary Assembly	222360	na
Scaffold_188	unplaced-scaffold	na	na	JBJHRQ010000097.1	=	NW_027461121.1	Primary Assembly	221855	na
Scaffold_189	unplaced-scaffold	na	na	JBJHRQ010000098.1	=	NW_027461122.1	Primary Assembly	219807	na
Scaffold_190	unplaced-scaffold	na	na	JBJHRQ010000099.1	=	NW_027461123.1	Primary Assembly	218663	na
Scaffold_192	unplaced-scaffold	na	na	JBJHRQ010000100.1	=	NW_027461124.1	Primary Assembly	203964	na
Scaffold_194	unplaced-scaffold	na	na	JBJHRQ010000101.1	=	NW_027461125.1	Primary Assembly	194503	na
Scaffold_197	unplaced-scaffold	na	na	JBJHRQ010000102.1	=	NW_027461126.1	Primary Assembly	190475	na
Scaffold_200	unplaced-scaffold	na	na	JBJHRQ010000103.1	=	NW_027461127.1	Primary Assembly	182975	na
Scaffold_202	unplaced-scaffold	na	na	JBJHRQ010000104.1	=	NW_027461128.1	Primary Assembly	178933	na
Scaffold_203	unplaced-scaffold	na	na	JBJHRQ010000105.1	=	NW_027461129.1	Primary Assembly	177572	na
Scaffold_205	unplaced-scaffold	na	na	JBJHRQ010000106.1	=	NW_027461130.1	Primary Assembly	171644	na
Scaffold_206	unplaced-scaffold	na	na	JBJHRQ010000107.1	=	NW_027461131.1	Primary Assembly	170923	na
Scaffold_207	unplaced-scaffold	na	na	JBJHRQ010000108.1	=	NW_027461132.1	Primary Assembly	167625	na
Scaffold_210	unplaced-scaffold	na	na	JBJHRQ010000109.1	=	NW_027461133.1	Primary Assembly	161577	na
Scaffold_218	unplaced-scaffold	na	na	JBJHRQ010000110.1	=	NW_027461134.1	Primary Assembly	136675	na
Scaffold_219	unplaced-scaffold	na	na	JBJHRQ010000111.1	=	NW_027461135.1	Primary Assembly	134078	na
Scaffold_225	unplaced-scaffold	na	na	JBJHRQ010000112.1	=	NW_027461136.1	Primary Assembly	129659	na
Scaffold_227	unplaced-scaffold	na	na	JBJHRQ010000113.1	=	NW_027461137.1	Primary Assembly	126054	na
Scaffold_228	unplaced-scaffold	na	na	JBJHRQ010000114.1	=	NW_027461138.1	Primary Assembly	126028	na
Scaffold_229	unplaced-scaffold	na	na	JBJHRQ010000115.1	=	NW_027461139.1	Primary Assembly	125250	na
Scaffold_230	unplaced-scaffold	na	na	JBJHRQ010000116.1	=	NW_027461140.1	Primary Assembly	125067	na
Scaffold_232	unplaced-scaffold	na	na	JBJHRQ010000117.1	=	NW_027461141.1	Primary Assembly	117331	na
Scaffold_235	unplaced-scaffold	na	na	JBJHRQ010000118.1	=	NW_027461142.1	Primary Assembly	114782	na
Scaffold_236	unplaced-scaffold	na	na	JBJHRQ010000119.1	=	NW_027461143.1	Primary Assembly	114291	na
Scaffold_237	unplaced-scaffold	na	na	JBJHRQ010000120.1	=	NW_027461144.1	Primary Assembly	110605	na
Scaffold_241	unplaced-scaffold	na	na	JBJHRQ010000121.1	=	NW_027461145.1	Primary Assembly	106572	na
Scaffold_243	unplaced-scaffold	na	na	JBJHRQ010000122.1	=	NW_027461146.1	Primary Assembly	99608	na
Scaffold_244	unplaced-scaffold	na	na	JBJHRQ010000123.1	=	NW_027461147.1	Primary Assembly	96936	na
Scaffold_248	unplaced-scaffold	na	na	JBJHRQ010000124.1	=	NW_027461148.1	Primary Assembly	92068	na
Scaffold_251	unplaced-scaffold	na	na	JBJHRQ010000125.1	=	NW_027461149.1	Primary Assembly	90500	na
Scaffold_253	unplaced-scaffold	na	na	JBJHRQ010000126.1	=	NW_027461150.1	Primary Assembly	86669	na
Scaffold_255	unplaced-scaffold	na	na	JBJHRQ010000127.1	=	NW_027461151.1	Primary Assembly	81825	na
Scaffold_256	unplaced-scaffold	na	na	JBJHRQ010000128.1	=	NW_027461152.1	Primary Assembly	80223	na
Scaffold_259	unplaced-scaffold	na	na	JBJHRQ010000129.1	=	NW_027461153.1	Primary Assembly	77817	na
Scaffold_264	unplaced-scaffold	na	na	JBJHRQ010000130.1	=	NW_027461154.1	Primary Assembly	74738	na
Scaffold_267	unplaced-scaffold	na	na	JBJHRQ010000131.1	=	NW_027461155.1	Primary Assembly	73780	na
Scaffold_269	unplaced-scaffold	na	na	JBJHRQ010000132.1	=	NW_027461156.1	Primary Assembly	70596	na
Scaffold_273	unplaced-scaffold	na	na	JBJHRQ010000133.1	=	NW_027461157.1	Primary Assembly	68017	na
Scaffold_276	unplaced-scaffold	na	na	JBJHRQ010000134.1	=	NW_027461158.1	Primary Assembly	66605	na
Scaffold_483	unplaced-scaffold	na	na	JBJHRQ010000135.1	=	NW_027461175.1	Primary Assembly	65541	na
Scaffold_277	unplaced-scaffold	na	na	JBJHRQ010000136.1	=	NW_027461159.1	Primary Assembly	62876	na
Scaffold_279	unplaced-scaffold	na	na	JBJHRQ010000137.1	=	NW_027461160.1	Primary Assembly	61769	na
Scaffold_281	unplaced-scaffold	na	na	JBJHRQ010000138.1	=	NW_027461161.1	Primary Assembly	60721	na
Scaffold_282	unplaced-scaffold	na	na	JBJHRQ010000139.1	=	NW_027461162.1	Primary Assembly	59788	na
Scaffold_283	unplaced-scaffold	na	na	JBJHRQ010000140.1	=	NW_027461163.1	Primary Assembly	58790	na
Scaffold_489	unplaced-scaffold	na	na	JBJHRQ010000141.1	=	NW_027461176.1	Primary Assembly	56097	na
Scaffold_288	unplaced-scaffold	na	na	JBJHRQ010000142.1	=	NW_027461164.1	Primary Assembly	55032	na
Scaffold_491	unplaced-scaffold	na	na	JBJHRQ010000143.1	=	NW_027461177.1	Primary Assembly	54529	na
Scaffold_291	unplaced-scaffold	na	na	JBJHRQ010000144.1	=	NW_027461165.1	Primary Assembly	53887	na
Scaffold_292	unplaced-scaffold	na	na	JBJHRQ010000145.1	=	NW_027461166.1	Primary Assembly	53190	na
Scaffold_295	unplaced-scaffold	na	na	JBJHRQ010000146.1	=	NW_027461167.1	Primary Assembly	50783	na
Scaffold_495	unplaced-scaffold	na	na	JBJHRQ010000147.1	=	NW_027461178.1	Primary Assembly	49849	na
Scaffold_496	unplaced-scaffold	na	na	JBJHRQ010000148.1	=	NW_027461179.1	Primary Assembly	45826	na
Scaffold_301	unplaced-scaffold	na	na	JBJHRQ010000149.1	=	NW_027461168.1	Primary Assembly	45658	na
Scaffold_498	unplaced-scaffold	na	na	JBJHRQ010000150.1	=	NW_027461180.1	Primary Assembly	45008	na
Scaffold_302	unplaced-scaffold	na	na	JBJHRQ010000151.1	=	NW_027461169.1	Primary Assembly	43773	na
Scaffold_500	unplaced-scaffold	na	na	JBJHRQ010000152.1	=	NW_027461181.1	Primary Assembly	43036	na
Scaffold_304	unplaced-scaffold	na	na	JBJHRQ010000153.1	=	NW_027461170.1	Primary Assembly	42566	na
Scaffold_502	unplaced-scaffold	na	na	JBJHRQ010000154.1	=	NW_027461182.1	Primary Assembly	41064	na
Scaffold_305	unplaced-scaffold	na	na	JBJHRQ010000155.1	=	NW_027461171.1	Primary Assembly	41047	na
Scaffold_312	unplaced-scaffold	na	na	JBJHRQ010000156.1	=	NW_027461172.1	Primary Assembly	36446	na
Scaffold_315	unplaced-scaffold	na	na	JBJHRQ010000157.1	=	NW_027461173.1	Primary Assembly	34457	na
Scaffold_316	unplaced-scaffold	na	na	JBJHRQ010000158.1	=	NW_027461174.1	Primary Assembly	32759	na
Scaffold_507	unplaced-scaffold	na	na	JBJHRQ010000159.1	=	NW_027461183.1	Primary Assembly	30633	na
Scaffold_508	unplaced-scaffold	na	na	JBJHRQ010000160.1	=	NW_027461184.1	Primary Assembly	30078	na
Scaffold_509	unplaced-scaffold	na	na	JBJHRQ010000161.1	=	NW_027461185.1	Primary Assembly	29343	na
MT	assembled-molecule	MT	Mitochondrion	na	<>	NC_029475.1	non-nuclear	16813	na