# Assembly name:  mSaiBol1.pri
# Organism name:  Saimiri boliviensis (Bolivian squirrel monkey)
# Isolate:  mSaiBol1
# Sex:  male
# Taxid:          27679
# BioSample:      SAMN46760316
# BioProject:     PRJNA1221990
# Submitter:      Vertebrate Genomes Project
# Date:           2025-03-12
# Assembly type:  haploid (principal pseudohaplotype of diploid)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    JBLWOU01
# Assembly method: Hifiasm + Hi-C phasing v. 0.18.8 + galaxy1; yahs v. 1.2a.2 + galaxy1
# Expected final version: no
# Genome coverage: 34.8x
# Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2 from mSaiBol1
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_048565385.1
# RefSeq assembly accession: GCF_048565385.1
# RefSeq assembly and GenBank assemblies identical: no
# Linked assembly: GCA_048565415.1 (alternate pseudohaplotype of diploid)
#
## Assembly-Units:
## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
## GCA_048565395.1	GCF_048565395.1	Primary Assembly
## GCA_048565405.1		non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
SUPER_1	assembled-molecule	1	Chromosome	CM109009.1	=	NC_133449.1	Primary Assembly	302010752	na
SUPER_2	assembled-molecule	2	Chromosome	CM109010.1	=	NC_133450.1	Primary Assembly	241270144	na
SUPER_3	assembled-molecule	3	Chromosome	CM109011.1	=	NC_133451.1	Primary Assembly	181099931	na
SUPER_4	assembled-molecule	4	Chromosome	CM109012.1	=	NC_133452.1	Primary Assembly	167606946	na
SUPER_5	assembled-molecule	5	Chromosome	CM109013.1	=	NC_133453.1	Primary Assembly	156753114	na
SUPER_6	assembled-molecule	6	Chromosome	CM109014.1	=	NC_133454.1	Primary Assembly	133896789	na
SUPER_7	assembled-molecule	7	Chromosome	CM109015.1	=	NC_133455.1	Primary Assembly	129414808	na
SUPER_8	assembled-molecule	8	Chromosome	CM109016.1	=	NC_133456.1	Primary Assembly	129217376	na
SUPER_9	assembled-molecule	9	Chromosome	CM109017.1	=	NC_133457.1	Primary Assembly	127517855	na
SUPER_10	assembled-molecule	10	Chromosome	CM109018.1	=	NC_133458.1	Primary Assembly	124232735	na
SUPER_11	assembled-molecule	11	Chromosome	CM109019.1	=	NC_133459.1	Primary Assembly	123845091	na
SUPER_12	assembled-molecule	12	Chromosome	CM109020.1	=	NC_133460.1	Primary Assembly	117451307	na
SUPER_13	assembled-molecule	13	Chromosome	CM109021.1	=	NC_133461.1	Primary Assembly	114437647	na
SUPER_14	assembled-molecule	14	Chromosome	CM109022.1	=	NC_133462.1	Primary Assembly	95953937	na
SUPER_15	assembled-molecule	15	Chromosome	CM109023.1	=	NC_133463.1	Primary Assembly	92579294	na
SUPER_16	assembled-molecule	16	Chromosome	CM109024.1	=	NC_133464.1	Primary Assembly	88606693	na
SUPER_17	assembled-molecule	17	Chromosome	CM109025.1	=	NC_133465.1	Primary Assembly	72674001	na
SUPER_18	assembled-molecule	18	Chromosome	CM109026.1	=	NC_133466.1	Primary Assembly	49473147	na
SUPER_19	assembled-molecule	19	Chromosome	CM109027.1	=	NC_133467.1	Primary Assembly	46583126	na
SUPER_20	assembled-molecule	20	Chromosome	CM109028.1	=	NC_133468.1	Primary Assembly	41966251	na
SUPER_21	assembled-molecule	21	Chromosome	CM109029.1	=	NC_133469.1	Primary Assembly	37265639	na
SUPER_X	assembled-molecule	X	Chromosome	CM109030.1	=	NC_133470.1	Primary Assembly	137536605	na
SUPER_Y	assembled-molecule	Y	Chromosome	CM109031.1	=	NC_133471.1	Primary Assembly	23051282	na
SUPER_1_unloc_4	unlocalized-scaffold	1	Chromosome	JBLWOU010000032.1	=	NW_027412487.1	Primary Assembly	503447	na
SUPER_1_unloc_1	unlocalized-scaffold	1	Chromosome	JBLWOU010000039.1	=	NW_027412484.1	Primary Assembly	92414	na
SUPER_1_unloc_3	unlocalized-scaffold	1	Chromosome	JBLWOU010000041.1	=	NW_027412486.1	Primary Assembly	80644	na
SUPER_1_unloc_2	unlocalized-scaffold	1	Chromosome	JBLWOU010000042.1	=	NW_027412485.1	Primary Assembly	59381	na
SUPER_2_unloc_4	unlocalized-scaffold	2	Chromosome	JBLWOU010000033.1	=	NW_027412491.1	Primary Assembly	419539	na
SUPER_2_unloc_1	unlocalized-scaffold	2	Chromosome	JBLWOU010000044.1	=	NW_027412488.1	Primary Assembly	50916	na
SUPER_2_unloc_2	unlocalized-scaffold	2	Chromosome	JBLWOU010000049.1	=	NW_027412489.1	Primary Assembly	39434	na
SUPER_2_unloc_3	unlocalized-scaffold	2	Chromosome	JBLWOU010000052.1	=	NW_027412490.1	Primary Assembly	37946	na
SUPER_3_unloc_3	unlocalized-scaffold	3	Chromosome	JBLWOU010000037.1	=	NW_027412494.1	Primary Assembly	305942	na
SUPER_3_unloc_1	unlocalized-scaffold	3	Chromosome	JBLWOU010000038.1	=	NW_027412492.1	Primary Assembly	223751	na
SUPER_3_unloc_2	unlocalized-scaffold	3	Chromosome	JBLWOU010000045.1	=	NW_027412493.1	Primary Assembly	48930	na
SUPER_9_unloc_1	unlocalized-scaffold	9	Chromosome	JBLWOU010000035.1	=	NW_027412495.1	Primary Assembly	335631	na
SUPER_11_unloc_1	unlocalized-scaffold	11	Chromosome	JBLWOU010000061.1	=	NW_027412496.1	Primary Assembly	23126	na
SUPER_12_unloc_1	unlocalized-scaffold	12	Chromosome	JBLWOU010000034.1	=	NW_027412497.1	Primary Assembly	367982	na
SUPER_12_unloc_2	unlocalized-scaffold	12	Chromosome	JBLWOU010000040.1	=	NW_027412498.1	Primary Assembly	83907	na
SUPER_16_unloc_2	unlocalized-scaffold	16	Chromosome	JBLWOU010000028.1	=	NW_027412500.1	Primary Assembly	1152570	na
SUPER_16_unloc_1	unlocalized-scaffold	16	Chromosome	JBLWOU010000030.1	=	NW_027412499.1	Primary Assembly	730796	na
SUPER_16_unloc_3	unlocalized-scaffold	16	Chromosome	JBLWOU010000036.1	=	NW_027412501.1	Primary Assembly	334849	na
SUPER_19_unloc_1	unlocalized-scaffold	19	Chromosome	JBLWOU010000025.1	=	NW_027412502.1	Primary Assembly	2725531	na
SUPER_19_unloc_2	unlocalized-scaffold	19	Chromosome	JBLWOU010000026.1	=	NW_027412503.1	Primary Assembly	1751286	na
SUPER_19_unloc_4	unlocalized-scaffold	19	Chromosome	JBLWOU010000027.1	=	NW_027412505.1	Primary Assembly	1562758	na
SUPER_19_unloc_3	unlocalized-scaffold	19	Chromosome	JBLWOU010000029.1	=	NW_027412504.1	Primary Assembly	1038801	na
SUPER_19_unloc_5	unlocalized-scaffold	19	Chromosome	JBLWOU010000031.1	=	NW_027412506.1	Primary Assembly	503604	na
SUPER_Y_unloc_1	unlocalized-scaffold	Y	Chromosome	JBLWOU010000055.1	=	NW_027412507.1	Primary Assembly	30380	na
Scaffold_25	unplaced-scaffold	na	na	JBLWOU010000043.1	=	NW_027412508.1	Primary Assembly	58760	na
Scaffold_26	unplaced-scaffold	na	na	JBLWOU010000046.1	=	NW_027412509.1	Primary Assembly	47041	na
Scaffold_27	unplaced-scaffold	na	na	JBLWOU010000047.1	=	NW_027412510.1	Primary Assembly	42685	na
Scaffold_28	unplaced-scaffold	na	na	JBLWOU010000048.1	=	NW_027412511.1	Primary Assembly	40124	na
Scaffold_29	unplaced-scaffold	na	na	JBLWOU010000050.1	=	NW_027412512.1	Primary Assembly	38672	na
Scaffold_30	unplaced-scaffold	na	na	JBLWOU010000051.1	=	NW_027412513.1	Primary Assembly	38591	na
Scaffold_31	unplaced-scaffold	na	na	JBLWOU010000053.1	=	NW_027412514.1	Primary Assembly	35328	na
Scaffold_32	unplaced-scaffold	na	na	JBLWOU010000054.1	=	NW_027412515.1	Primary Assembly	33654	na
Scaffold_33	unplaced-scaffold	na	na	JBLWOU010000056.1	=	NW_027412516.1	Primary Assembly	29222	na
Scaffold_34	unplaced-scaffold	na	na	JBLWOU010000057.1	=	NW_027412517.1	Primary Assembly	29003	na
Scaffold_35	unplaced-scaffold	na	na	JBLWOU010000058.1	=	NW_027412518.1	Primary Assembly	27538	na
Scaffold_36	unplaced-scaffold	na	na	JBLWOU010000059.1	=	NW_027412519.1	Primary Assembly	25343	na
Scaffold_37	unplaced-scaffold	na	na	JBLWOU010000060.1	=	NW_027412520.1	Primary Assembly	23902	na
Scaffold_38	unplaced-scaffold	na	na	JBLWOU010000062.1	=	NW_027412521.1	Primary Assembly	21229	na
Scaffold_39	unplaced-scaffold	na	na	JBLWOU010000063.1	=	NW_027412522.1	Primary Assembly	20841	na
atg000004l_rotated	assembled-molecule	MT	Mitochondrion	CM109032.1	<>	na	non-nuclear	16472	na