# Assembly name: HU_Pman_BW_mat_3.1 # Organism name: Peromyscus maniculatus bairdii (prairie deer mouse) # Isolate: BWxNUB_F1_BW_parent # Sex: female # Taxid: 230844 # BioSample: SAMN49628720 # BioProject: PRJNA1155677 # Submitter: Harvard University # Date: 2025-04-22 # Assembly type: haploid (maternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBMNXS01 # Assembly method: hifiasm v. 0.19.5-r587; Dovetail v. HiRise # Expected final version: yes # Genome coverage: 30x # Sequencing technology: PacBio Sequel; Dovetail Omni-C # RefSeq category: Reference Genome # GenBank assembly accession: GCA_049852395.1 # RefSeq assembly accession: GCF_049852395.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_049852375.1 (paternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_049852405.1 GCF_049852405.1 Primary Assembly ## GCF_018885405.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM113195.1 = NC_134852.1 Primary Assembly 214775318 na chr2 assembled-molecule 2 Chromosome CM113196.1 = NC_134853.1 Primary Assembly 173669867 na chr3 assembled-molecule 3 Chromosome CM113197.1 = NC_134854.1 Primary Assembly 170425380 na chr4 assembled-molecule 4 Chromosome CM113198.1 = NC_134855.1 Primary Assembly 159359088 na chr5 assembled-molecule 5 Chromosome CM113199.1 = NC_134856.1 Primary Assembly 145021001 na chr6 assembled-molecule 6 Chromosome CM113200.1 = NC_134857.1 Primary Assembly 140148521 na chr7 assembled-molecule 7 Chromosome CM113201.1 = NC_134858.1 Primary Assembly 122208007 na chr8 assembled-molecule 8 Chromosome CM113202.1 = NC_134859.1 Primary Assembly 110101416 na chr9 assembled-molecule 9 Chromosome CM113203.1 = NC_134860.1 Primary Assembly 122329005 na chr10 assembled-molecule 10 Chromosome CM113204.1 = NC_134861.1 Primary Assembly 101751432 na chr11 assembled-molecule 11 Chromosome CM113205.1 = NC_134862.1 Primary Assembly 104458120 na chr12 assembled-molecule 12 Chromosome CM113206.1 = NC_134863.1 Primary Assembly 88302313 na chr13 assembled-molecule 13 Chromosome CM113207.1 = NC_134864.1 Primary Assembly 68437100 na chr14 assembled-molecule 14 Chromosome CM113208.1 = NC_134865.1 Primary Assembly 91834715 na chr15 assembled-molecule 15 Chromosome CM113209.1 = NC_134866.1 Primary Assembly 83294105 na chr16 assembled-molecule 16 Chromosome CM113210.1 = NC_134867.1 Primary Assembly 68482844 na chr17 assembled-molecule 17 Chromosome CM113211.1 = NC_134868.1 Primary Assembly 65919039 na chr18 assembled-molecule 18 Chromosome CM113212.1 = NC_134869.1 Primary Assembly 54680123 na chr19 assembled-molecule 19 Chromosome CM113213.1 = NC_134870.1 Primary Assembly 81944470 na chr20 assembled-molecule 20 Chromosome CM113214.1 = NC_134871.1 Primary Assembly 73771006 na chr21 assembled-molecule 21 Chromosome CM113215.1 = NC_134872.1 Primary Assembly 72590545 na chr22 assembled-molecule 22 Chromosome CM113216.1 = NC_134873.1 Primary Assembly 64387071 na chr23 assembled-molecule 23 Chromosome CM113217.1 = NC_134874.1 Primary Assembly 63300833 na chrX assembled-molecule X Chromosome CM113218.1 = NC_134875.1 Primary Assembly 145873964 na MT assembled-molecule MT Mitochondrion na <> NC_039921.1 non-nuclear 16322 na