# Assembly name: ASM5033700v1 # Organism name: Photobacterium japonica (g-proteobacteria) # Infraspecific name: strain=JAMM0518 # Taxid: 2910235 # BioSample: SAMN24907490 # BioProject: PRJNA796716 # Submitter: Universidade Federal do Rio de Janeiro # Date: 2025-05-13 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JAKJSN01 # Assembly method: A5-MiSeq v. v20160825 # Expected final version: yes # Genome coverage: 100x # Sequencing technology: Illumina MiSeq # RefSeq category: Reference Genome # GenBank assembly accession: GCA_050337005.1 # RefSeq assembly accession: GCF_050337005.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_050337035.1 GCF_050337035.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name JAMM0518_Contig1 unplaced-scaffold na na JAKJSN010000001.1 = NZ_JAKJSN010000001.1 Primary Assembly 18255 na JAMM0518_Contig2 unplaced-scaffold na na JAKJSN010000002.1 = NZ_JAKJSN010000002.1 Primary Assembly 30331 na JAMM0518_Contig3 unplaced-scaffold na na JAKJSN010000003.1 = NZ_JAKJSN010000003.1 Primary Assembly 30444 na JAMM0518_Contig4 unplaced-scaffold na na JAKJSN010000004.1 = NZ_JAKJSN010000004.1 Primary Assembly 4972 na JAMM0518_Contig5 unplaced-scaffold na na JAKJSN010000005.1 = NZ_JAKJSN010000005.1 Primary Assembly 2192 na JAMM0518_Contig6 unplaced-scaffold na na JAKJSN010000006.1 = NZ_JAKJSN010000006.1 Primary Assembly 6738 na JAMM0518_scaffold_0 unplaced-scaffold na na JAKJSN010000007.1 = NZ_JAKJSN010000007.1 Primary Assembly 231646 na JAMM0518_scaffold_1 unplaced-scaffold na na JAKJSN010000008.1 = NZ_JAKJSN010000008.1 Primary Assembly 190430 na JAMM0518_scaffold_2 unplaced-scaffold na na JAKJSN010000009.1 = NZ_JAKJSN010000009.1 Primary Assembly 170859 na JAMM0518_scaffold_3 unplaced-scaffold na na JAKJSN010000010.1 = NZ_JAKJSN010000010.1 Primary Assembly 168767 na JAMM0518_scaffold_4 unplaced-scaffold na na JAKJSN010000011.1 = NZ_JAKJSN010000011.1 Primary Assembly 147879 na JAMM0518_scaffold_5 unplaced-scaffold na na JAKJSN010000012.1 = NZ_JAKJSN010000012.1 Primary Assembly 147805 na JAMM0518_scaffold_6 unplaced-scaffold na na JAKJSN010000013.1 = NZ_JAKJSN010000013.1 Primary Assembly 141701 na JAMM0518_scaffold_7 unplaced-scaffold na na JAKJSN010000014.1 = NZ_JAKJSN010000014.1 Primary Assembly 136105 na JAMM0518_scaffold_8 unplaced-scaffold na na JAKJSN010000015.1 = NZ_JAKJSN010000015.1 Primary Assembly 134110 na JAMM0518_scaffold_9 unplaced-scaffold na na JAKJSN010000016.1 = NZ_JAKJSN010000016.1 Primary Assembly 123920 na JAMM0518_scaffold_10 unplaced-scaffold na na JAKJSN010000017.1 = NZ_JAKJSN010000017.1 Primary Assembly 113809 na JAMM0518_scaffold_11 unplaced-scaffold na na JAKJSN010000018.1 = NZ_JAKJSN010000018.1 Primary Assembly 113238 na JAMM0518_scaffold_12 unplaced-scaffold na na JAKJSN010000019.1 = NZ_JAKJSN010000019.1 Primary Assembly 108305 na JAMM0518_scaffold_13 unplaced-scaffold na na JAKJSN010000020.1 = NZ_JAKJSN010000020.1 Primary Assembly 102643 na JAMM0518_scaffold_14 unplaced-scaffold na na JAKJSN010000021.1 = NZ_JAKJSN010000021.1 Primary Assembly 102173 na JAMM0518_scaffold_15 unplaced-scaffold na na JAKJSN010000022.1 = NZ_JAKJSN010000022.1 Primary Assembly 98029 na JAMM0518_scaffold_16 unplaced-scaffold na na JAKJSN010000023.1 = NZ_JAKJSN010000023.1 Primary Assembly 86986 na JAMM0518_scaffold_17 unplaced-scaffold na na JAKJSN010000024.1 = NZ_JAKJSN010000024.1 Primary Assembly 86868 na JAMM0518_scaffold_18 unplaced-scaffold na na JAKJSN010000025.1 = NZ_JAKJSN010000025.1 Primary Assembly 84151 na JAMM0518_scaffold_19 unplaced-scaffold na na JAKJSN010000026.1 = NZ_JAKJSN010000026.1 Primary Assembly 83873 na JAMM0518_scaffold_20 unplaced-scaffold na na JAKJSN010000027.1 = NZ_JAKJSN010000027.1 Primary Assembly 81601 na JAMM0518_scaffold_21 unplaced-scaffold na na JAKJSN010000028.1 = NZ_JAKJSN010000028.1 Primary Assembly 79938 na JAMM0518_scaffold_22 unplaced-scaffold na na JAKJSN010000029.1 = NZ_JAKJSN010000029.1 Primary Assembly 79881 na JAMM0518_scaffold_23 unplaced-scaffold na na JAKJSN010000030.1 = NZ_JAKJSN010000030.1 Primary Assembly 73060 na JAMM0518_scaffold_24 unplaced-scaffold na na JAKJSN010000031.1 = NZ_JAKJSN010000031.1 Primary Assembly 70605 na JAMM0518_scaffold_25 unplaced-scaffold na na JAKJSN010000032.1 = NZ_JAKJSN010000032.1 Primary Assembly 67483 na JAMM0518_scaffold_26 unplaced-scaffold na na JAKJSN010000033.1 = NZ_JAKJSN010000033.1 Primary Assembly 63044 na JAMM0518_scaffold_27 unplaced-scaffold na na JAKJSN010000034.1 = NZ_JAKJSN010000034.1 Primary Assembly 61422 na JAMM0518_scaffold_28 unplaced-scaffold na na JAKJSN010000035.1 = NZ_JAKJSN010000035.1 Primary Assembly 61156 na JAMM0518_scaffold_29 unplaced-scaffold na na JAKJSN010000036.1 = NZ_JAKJSN010000036.1 Primary Assembly 60050 na JAMM0518_scaffold_30 unplaced-scaffold na na JAKJSN010000037.1 = NZ_JAKJSN010000037.1 Primary Assembly 58011 na JAMM0518_scaffold_31 unplaced-scaffold na na JAKJSN010000038.1 = NZ_JAKJSN010000038.1 Primary Assembly 55699 na JAMM0518_scaffold_32 unplaced-scaffold na na JAKJSN010000039.1 = NZ_JAKJSN010000039.1 Primary Assembly 55218 na JAMM0518_scaffold_33 unplaced-scaffold na na JAKJSN010000040.1 = NZ_JAKJSN010000040.1 Primary Assembly 54921 na JAMM0518_scaffold_34 unplaced-scaffold na na JAKJSN010000041.1 = NZ_JAKJSN010000041.1 Primary Assembly 54431 na JAMM0518_scaffold_35 unplaced-scaffold na na JAKJSN010000042.1 = NZ_JAKJSN010000042.1 Primary Assembly 62920 na JAMM0518_scaffold_36 unplaced-scaffold na na JAKJSN010000043.1 = NZ_JAKJSN010000043.1 Primary Assembly 52036 na JAMM0518_scaffold_37 unplaced-scaffold na na JAKJSN010000044.1 = NZ_JAKJSN010000044.1 Primary Assembly 51820 na JAMM0518_scaffold_38 unplaced-scaffold na na JAKJSN010000045.1 = NZ_JAKJSN010000045.1 Primary Assembly 50095 na JAMM0518_scaffold_39 unplaced-scaffold na na JAKJSN010000046.1 = NZ_JAKJSN010000046.1 Primary Assembly 48366 na JAMM0518_scaffold_40 unplaced-scaffold na na JAKJSN010000047.1 = NZ_JAKJSN010000047.1 Primary Assembly 48128 na JAMM0518_scaffold_41 unplaced-scaffold na na JAKJSN010000048.1 = NZ_JAKJSN010000048.1 Primary Assembly 48105 na JAMM0518_scaffold_42 unplaced-scaffold na na JAKJSN010000049.1 = NZ_JAKJSN010000049.1 Primary Assembly 45916 na JAMM0518_scaffold_43 unplaced-scaffold na na JAKJSN010000050.1 = NZ_JAKJSN010000050.1 Primary Assembly 41272 na JAMM0518_scaffold_44 unplaced-scaffold na na JAKJSN010000051.1 = NZ_JAKJSN010000051.1 Primary Assembly 39142 na JAMM0518_scaffold_45 unplaced-scaffold na na JAKJSN010000052.1 = NZ_JAKJSN010000052.1 Primary Assembly 37314 na JAMM0518_scaffold_46 unplaced-scaffold na na JAKJSN010000053.1 = NZ_JAKJSN010000053.1 Primary Assembly 37202 na JAMM0518_scaffold_47 unplaced-scaffold na na JAKJSN010000054.1 = NZ_JAKJSN010000054.1 Primary Assembly 36334 na JAMM0518_scaffold_48 unplaced-scaffold na na JAKJSN010000055.1 = NZ_JAKJSN010000055.1 Primary Assembly 35401 na JAMM0518_scaffold_49 unplaced-scaffold na na JAKJSN010000056.1 = NZ_JAKJSN010000056.1 Primary Assembly 34484 na JAMM0518_scaffold_50 unplaced-scaffold na na JAKJSN010000057.1 = NZ_JAKJSN010000057.1 Primary Assembly 33954 na JAMM0518_scaffold_51 unplaced-scaffold na na JAKJSN010000058.1 = NZ_JAKJSN010000058.1 Primary Assembly 33680 na JAMM0518_scaffold_52 unplaced-scaffold na na JAKJSN010000059.1 = NZ_JAKJSN010000059.1 Primary Assembly 32261 na JAMM0518_scaffold_53 unplaced-scaffold na na JAKJSN010000060.1 = NZ_JAKJSN010000060.1 Primary Assembly 44597 na JAMM0518_scaffold_54 unplaced-scaffold na na JAKJSN010000061.1 = NZ_JAKJSN010000061.1 Primary Assembly 30453 na JAMM0518_scaffold_55 unplaced-scaffold na na JAKJSN010000062.1 = NZ_JAKJSN010000062.1 Primary Assembly 29558 na JAMM0518_scaffold_56 unplaced-scaffold na na JAKJSN010000063.1 = NZ_JAKJSN010000063.1 Primary Assembly 29256 na JAMM0518_scaffold_57 unplaced-scaffold na na JAKJSN010000064.1 = NZ_JAKJSN010000064.1 Primary Assembly 27907 na JAMM0518_scaffold_58 unplaced-scaffold na na JAKJSN010000065.1 = NZ_JAKJSN010000065.1 Primary Assembly 27898 na JAMM0518_scaffold_59 unplaced-scaffold na na JAKJSN010000066.1 = NZ_JAKJSN010000066.1 Primary Assembly 27259 na JAMM0518_scaffold_61 unplaced-scaffold na na JAKJSN010000067.1 = NZ_JAKJSN010000067.1 Primary Assembly 25741 na JAMM0518_scaffold_62 unplaced-scaffold na na JAKJSN010000068.1 = NZ_JAKJSN010000068.1 Primary Assembly 23311 na JAMM0518_scaffold_63 unplaced-scaffold na na JAKJSN010000069.1 = NZ_JAKJSN010000069.1 Primary Assembly 22938 na JAMM0518_scaffold_64 unplaced-scaffold na na JAKJSN010000070.1 = NZ_JAKJSN010000070.1 Primary Assembly 21503 na JAMM0518_scaffold_65 unplaced-scaffold na na JAKJSN010000071.1 = NZ_JAKJSN010000071.1 Primary Assembly 21180 na JAMM0518_scaffold_66 unplaced-scaffold na na JAKJSN010000072.1 = NZ_JAKJSN010000072.1 Primary Assembly 20784 na JAMM0518_scaffold_67 unplaced-scaffold na na JAKJSN010000073.1 = NZ_JAKJSN010000073.1 Primary Assembly 20126 na JAMM0518_scaffold_68 unplaced-scaffold na na JAKJSN010000074.1 = NZ_JAKJSN010000074.1 Primary Assembly 19555 na JAMM0518_scaffold_70 unplaced-scaffold na na JAKJSN010000075.1 = NZ_JAKJSN010000075.1 Primary Assembly 17397 na JAMM0518_scaffold_72 unplaced-scaffold na na JAKJSN010000076.1 = NZ_JAKJSN010000076.1 Primary Assembly 16802 na JAMM0518_scaffold_73 unplaced-scaffold na na JAKJSN010000077.1 = NZ_JAKJSN010000077.1 Primary Assembly 16795 na JAMM0518_scaffold_74 unplaced-scaffold na na JAKJSN010000078.1 = NZ_JAKJSN010000078.1 Primary Assembly 16610 na JAMM0518_scaffold_75 unplaced-scaffold na na JAKJSN010000079.1 = NZ_JAKJSN010000079.1 Primary Assembly 16320 na JAMM0518_scaffold_76 unplaced-scaffold na na JAKJSN010000080.1 = NZ_JAKJSN010000080.1 Primary Assembly 14741 na JAMM0518_scaffold_77 unplaced-scaffold na na JAKJSN010000081.1 = NZ_JAKJSN010000081.1 Primary Assembly 14309 na JAMM0518_scaffold_78 unplaced-scaffold na na JAKJSN010000082.1 = NZ_JAKJSN010000082.1 Primary Assembly 13889 na JAMM0518_scaffold_79 unplaced-scaffold na na JAKJSN010000083.1 = NZ_JAKJSN010000083.1 Primary Assembly 13698 na JAMM0518_scaffold_80 unplaced-scaffold na na JAKJSN010000084.1 = NZ_JAKJSN010000084.1 Primary Assembly 13590 na JAMM0518_scaffold_81 unplaced-scaffold na na JAKJSN010000085.1 = NZ_JAKJSN010000085.1 Primary Assembly 13285 na JAMM0518_scaffold_82 unplaced-scaffold na na JAKJSN010000086.1 = NZ_JAKJSN010000086.1 Primary Assembly 13272 na JAMM0518_scaffold_83 unplaced-scaffold na na JAKJSN010000087.1 = NZ_JAKJSN010000087.1 Primary Assembly 13243 na JAMM0518_scaffold_84 unplaced-scaffold na na JAKJSN010000088.1 = NZ_JAKJSN010000088.1 Primary Assembly 13070 na JAMM0518_scaffold_85 unplaced-scaffold na na JAKJSN010000089.1 = NZ_JAKJSN010000089.1 Primary Assembly 12955 na JAMM0518_scaffold_86 unplaced-scaffold na na JAKJSN010000090.1 = NZ_JAKJSN010000090.1 Primary Assembly 12760 na JAMM0518_scaffold_87 unplaced-scaffold na na JAKJSN010000091.1 = NZ_JAKJSN010000091.1 Primary Assembly 12751 na JAMM0518_scaffold_88 unplaced-scaffold na na JAKJSN010000092.1 = NZ_JAKJSN010000092.1 Primary Assembly 12473 na JAMM0518_scaffold_90 unplaced-scaffold na na JAKJSN010000093.1 = NZ_JAKJSN010000093.1 Primary Assembly 11551 na JAMM0518_scaffold_91 unplaced-scaffold na na JAKJSN010000094.1 = NZ_JAKJSN010000094.1 Primary Assembly 10421 na JAMM0518_scaffold_92 unplaced-scaffold na na JAKJSN010000095.1 = NZ_JAKJSN010000095.1 Primary Assembly 10305 na JAMM0518_scaffold_93 unplaced-scaffold na na JAKJSN010000096.1 = NZ_JAKJSN010000096.1 Primary Assembly 9188 na JAMM0518_scaffold_94 unplaced-scaffold na na JAKJSN010000097.1 = NZ_JAKJSN010000097.1 Primary Assembly 8515 na JAMM0518_scaffold_95 unplaced-scaffold na na JAKJSN010000098.1 = NZ_JAKJSN010000098.1 Primary Assembly 8434 na JAMM0518_scaffold_96 unplaced-scaffold na na JAKJSN010000099.1 = NZ_JAKJSN010000099.1 Primary Assembly 7330 na JAMM0518_scaffold_97 unplaced-scaffold na na JAKJSN010000100.1 = NZ_JAKJSN010000100.1 Primary Assembly 7171 na JAMM0518_scaffold_98 unplaced-scaffold na na JAKJSN010000101.1 = NZ_JAKJSN010000101.1 Primary Assembly 7089 na JAMM0518_scaffold_99 unplaced-scaffold na na JAKJSN010000102.1 = NZ_JAKJSN010000102.1 Primary Assembly 6606 na JAMM0518_scaffold_100 unplaced-scaffold na na JAKJSN010000103.1 = NZ_JAKJSN010000103.1 Primary Assembly 6389 na JAMM0518_scaffold_101 unplaced-scaffold na na JAKJSN010000104.1 = NZ_JAKJSN010000104.1 Primary Assembly 5229 na JAMM0518_scaffold_102 unplaced-scaffold na na JAKJSN010000105.1 = NZ_JAKJSN010000105.1 Primary Assembly 5155 na JAMM0518_scaffold_103 unplaced-scaffold na na JAKJSN010000106.1 = NZ_JAKJSN010000106.1 Primary Assembly 4975 na JAMM0518_scaffold_106 unplaced-scaffold na na JAKJSN010000107.1 = NZ_JAKJSN010000107.1 Primary Assembly 4726 na JAMM0518_scaffold_107 unplaced-scaffold na na JAKJSN010000108.1 = NZ_JAKJSN010000108.1 Primary Assembly 4519 na JAMM0518_scaffold_108 unplaced-scaffold na na JAKJSN010000109.1 = NZ_JAKJSN010000109.1 Primary Assembly 4094 na JAMM0518_scaffold_109 unplaced-scaffold na na JAKJSN010000110.1 = NZ_JAKJSN010000110.1 Primary Assembly 4044 na JAMM0518_scaffold_110 unplaced-scaffold na na JAKJSN010000111.1 = NZ_JAKJSN010000111.1 Primary Assembly 3907 na JAMM0518_scaffold_111 unplaced-scaffold na na JAKJSN010000112.1 = NZ_JAKJSN010000112.1 Primary Assembly 3883 na JAMM0518_scaffold_112 unplaced-scaffold na na JAKJSN010000113.1 = NZ_JAKJSN010000113.1 Primary Assembly 3582 na JAMM0518_scaffold_113 unplaced-scaffold na na JAKJSN010000114.1 = NZ_JAKJSN010000114.1 Primary Assembly 3499 na JAMM0518_scaffold_114 unplaced-scaffold na na JAKJSN010000115.1 = NZ_JAKJSN010000115.1 Primary Assembly 3063 na JAMM0518_scaffold_115 unplaced-scaffold na na JAKJSN010000116.1 = NZ_JAKJSN010000116.1 Primary Assembly 3015 na JAMM0518_scaffold_116 unplaced-scaffold na na JAKJSN010000117.1 = NZ_JAKJSN010000117.1 Primary Assembly 2956 na JAMM0518_scaffold_117 unplaced-scaffold na na JAKJSN010000118.1 = NZ_JAKJSN010000118.1 Primary Assembly 2950 na JAMM0518_scaffold_118 unplaced-scaffold na na JAKJSN010000119.1 = NZ_JAKJSN010000119.1 Primary Assembly 2906 na JAMM0518_scaffold_119 unplaced-scaffold na na JAKJSN010000120.1 = NZ_JAKJSN010000120.1 Primary Assembly 2821 na JAMM0518_scaffold_121 unplaced-scaffold na na JAKJSN010000121.1 = NZ_JAKJSN010000121.1 Primary Assembly 2566 na JAMM0518_scaffold_122 unplaced-scaffold na na JAKJSN010000122.1 = NZ_JAKJSN010000122.1 Primary Assembly 2463 na JAMM0518_scaffold_123 unplaced-scaffold na na JAKJSN010000123.1 = NZ_JAKJSN010000123.1 Primary Assembly 2336 na JAMM0518_scaffold_126 unplaced-scaffold na na JAKJSN010000124.1 = NZ_JAKJSN010000124.1 Primary Assembly 1995 na JAMM0518_scaffold_127 unplaced-scaffold na na JAKJSN010000125.1 = NZ_JAKJSN010000125.1 Primary Assembly 1976 na JAMM0518_scaffold_128 unplaced-scaffold na na JAKJSN010000126.1 = NZ_JAKJSN010000126.1 Primary Assembly 1704 na JAMM0518_scaffold_129 unplaced-scaffold na na JAKJSN010000127.1 = NZ_JAKJSN010000127.1 Primary Assembly 1522 na JAMM0518_scaffold_130 unplaced-scaffold na na JAKJSN010000128.1 = NZ_JAKJSN010000128.1 Primary Assembly 1515 na JAMM0518_scaffold_132 unplaced-scaffold na na JAKJSN010000129.1 = NZ_JAKJSN010000129.1 Primary Assembly 1344 na JAMM0518_scaffold_135 unplaced-scaffold na na JAKJSN010000130.1 = NZ_JAKJSN010000130.1 Primary Assembly 1108 na JAMM0518_scaffold_138 unplaced-scaffold na na JAKJSN010000131.1 = NZ_JAKJSN010000131.1 Primary Assembly 922 na JAMM0518_scaffold_139 unplaced-scaffold na na JAKJSN010000132.1 = NZ_JAKJSN010000132.1 Primary Assembly 906 na JAMM0518_scaffold_140 unplaced-scaffold na na JAKJSN010000133.1 = NZ_JAKJSN010000133.1 Primary Assembly 801 na JAMM0518_scaffold_141 unplaced-scaffold na na JAKJSN010000134.1 = NZ_JAKJSN010000134.1 Primary Assembly 795 na JAMM0518_scaffold_142 unplaced-scaffold na na JAKJSN010000135.1 = NZ_JAKJSN010000135.1 Primary Assembly 768 na JAMM0518_scaffold_143 unplaced-scaffold na na JAKJSN010000136.1 = NZ_JAKJSN010000136.1 Primary Assembly 755 na JAMM0518_scaffold_144 unplaced-scaffold na na JAKJSN010000137.1 = NZ_JAKJSN010000137.1 Primary Assembly 687 na JAMM0518_scaffold_145 unplaced-scaffold na na JAKJSN010000138.1 = NZ_JAKJSN010000138.1 Primary Assembly 658 na JAMM0518_scaffold_148 unplaced-scaffold na na JAKJSN010000139.1 = NZ_JAKJSN010000139.1 Primary Assembly 617 na