# Assembly name: bAgePho1.hap1 # Organism name: Agelaius phoeniceus (red-winged blackbird) # Isolate: bAgePho1 # Sex: female # Taxid: 39638 # BioSample: SAMN48528219 # BioProject: PRJNA1263559 # Submitter: Vertebrate Genomes Project # Date: 2025-07-14 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBPJSG01 # Assembly method: Hifiasm + Hi-C phasing v. 0.19.8 + galaxy0; Bionano Solve v. 3.7; yahs v. 1.2a.2 + galaxy1 # Expected final version: no # Genome coverage: 68.6x # Sequencing technology: PacBio Sequel II HiFi; Arima Hi-C v2; Bionano optical mapping (Saphyr) # GenBank assembly accession: GCA_051311805.1 # RefSeq assembly accession: GCF_051311805.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_051348685.1 (haplotype 2) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_051311895.1 GCF_051311895.1 Primary Assembly ## GCA_051311905.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM119708.1 = NC_135265.1 Primary Assembly 156558396 na SUPER_2 assembled-molecule 2 Chromosome CM119709.1 = NC_135266.1 Primary Assembly 118038693 na SUPER_3 assembled-molecule 3 Chromosome CM119710.1 = NC_135267.1 Primary Assembly 116760858 na SUPER_4 assembled-molecule 4 Chromosome CM119711.1 = NC_135268.1 Primary Assembly 75029916 na SUPER_5 assembled-molecule 5 Chromosome CM119712.1 = NC_135269.1 Primary Assembly 73898474 na SUPER_6 assembled-molecule 6 Chromosome CM119713.1 = NC_135270.1 Primary Assembly 64522920 na SUPER_7 assembled-molecule 7 Chromosome CM119714.1 = NC_135271.1 Primary Assembly 51155215 na SUPER_8 assembled-molecule 8 Chromosome CM119715.1 = NC_135272.1 Primary Assembly 38330339 na SUPER_9 assembled-molecule 9 Chromosome CM119716.1 = NC_135273.1 Primary Assembly 36468260 na SUPER_10 assembled-molecule 10 Chromosome CM119717.1 = NC_135274.1 Primary Assembly 27285257 na SUPER_11 assembled-molecule 11 Chromosome CM119718.1 = NC_135275.1 Primary Assembly 23373426 na SUPER_12 assembled-molecule 12 Chromosome CM119719.1 = NC_135276.1 Primary Assembly 22394133 na SUPER_13 assembled-molecule 13 Chromosome CM119720.1 = NC_135277.1 Primary Assembly 22130304 na SUPER_14 assembled-molecule 14 Chromosome CM119721.1 = NC_135278.1 Primary Assembly 21058870 na SUPER_15 assembled-molecule 15 Chromosome CM119722.1 = NC_135279.1 Primary Assembly 20023038 na SUPER_16 assembled-molecule 16 Chromosome CM119723.1 = NC_135280.1 Primary Assembly 16704999 na SUPER_17 assembled-molecule 17 Chromosome CM119724.1 = NC_135281.1 Primary Assembly 16312187 na SUPER_18 assembled-molecule 18 Chromosome CM119725.1 = NC_135282.1 Primary Assembly 14542921 na SUPER_19 assembled-molecule 19 Chromosome CM119726.1 = NC_135283.1 Primary Assembly 13768176 na SUPER_20 assembled-molecule 20 Chromosome CM119727.1 = NC_135284.1 Primary Assembly 12734519 na SUPER_21 assembled-molecule 21 Chromosome CM119728.1 = NC_135285.1 Primary Assembly 11764193 na SUPER_22 assembled-molecule 22 Chromosome CM119729.1 = NC_135286.1 Primary Assembly 9056908 na SUPER_23 assembled-molecule 23 Chromosome CM119730.1 = NC_135287.1 Primary Assembly 8486159 na SUPER_24 assembled-molecule 24 Chromosome CM119731.1 = NC_135288.1 Primary Assembly 8452028 na SUPER_25 assembled-molecule 25 Chromosome CM119732.1 = NC_135289.1 Primary Assembly 7950042 na SUPER_26 assembled-molecule 26 Chromosome CM119733.1 = NC_135290.1 Primary Assembly 7665585 na SUPER_27 assembled-molecule 27 Chromosome CM119734.1 = NC_135291.1 Primary Assembly 7343985 na SUPER_28 assembled-molecule 28 Chromosome CM119735.1 = NC_135292.1 Primary Assembly 7268474 na SUPER_29 assembled-molecule 29 Chromosome CM119736.1 = NC_135293.1 Primary Assembly 7034596 na SUPER_30 assembled-molecule 30 Chromosome CM119737.1 = NC_135294.1 Primary Assembly 7013322 na SUPER_31 assembled-molecule 31 Chromosome CM119738.1 = NC_135295.1 Primary Assembly 6526588 na SUPER_32 assembled-molecule 32 Chromosome CM119739.1 = NC_135296.1 Primary Assembly 5555710 na SUPER_33 assembled-molecule 33 Chromosome CM119740.1 = NC_135297.1 Primary Assembly 4969116 na SUPER_34 assembled-molecule 34 Chromosome CM119741.1 = NC_135298.1 Primary Assembly 4943248 na SUPER_35 assembled-molecule 35 Chromosome CM119742.1 = NC_135299.1 Primary Assembly 4266759 na SUPER_36 assembled-molecule 36 Chromosome CM119743.1 = NC_135300.1 Primary Assembly 2636210 na SUPER_W assembled-molecule W Chromosome CM119744.1 = NC_135301.1 Primary Assembly 24620248 na SUPER_37 assembled-molecule 37 Chromosome CM119745.1 = NC_135302.1 Primary Assembly 2389662 na SUPER_Z assembled-molecule Z Chromosome CM119746.1 = NC_135303.1 Primary Assembly 95998702 na SUPER_38 assembled-molecule 38 Chromosome CM119747.1 = NC_135304.1 Primary Assembly 1949520 na SUPER_1_unloc_1 unlocalized-scaffold 1 Chromosome JBPJSG010000063.1 = NW_027509863.1 Primary Assembly 268690 na SUPER_1_unloc_2 unlocalized-scaffold 1 Chromosome JBPJSG010000102.1 = NW_027509864.1 Primary Assembly 117999 na SUPER_6_unloc_1 unlocalized-scaffold 6 Chromosome JBPJSG010000050.1 = NW_027509865.1 Primary Assembly 906826 na SUPER_W_unloc_2 unlocalized-scaffold W Chromosome JBPJSG010000024.1 = NW_027509867.1 Primary Assembly 12197094 na SUPER_W_unloc_1 unlocalized-scaffold W Chromosome JBPJSG010000026.1 = NW_027509866.1 Primary Assembly 10509783 na SUPER_37_unloc_1 unlocalized-scaffold 37 Chromosome JBPJSG010000168.1 = NW_027509868.1 Primary Assembly 72824 na Scaffold_105 unplaced-scaffold na na JBPJSG010000040.1 = NW_027509873.1 Primary Assembly 4346764 na Scaffold_113 unplaced-scaffold na na JBPJSG010000042.1 = NW_027509877.1 Primary Assembly 2736654 na Scaffold_110 unplaced-scaffold na na JBPJSG010000045.1 = NW_027509876.1 Primary Assembly 2374142 na Scaffold_115 unplaced-scaffold na na JBPJSG010000046.1 = NW_027509878.1 Primary Assembly 2039099 na Scaffold_108 unplaced-scaffold na na JBPJSG010000048.1 = NW_027509874.1 Primary Assembly 1114167 na Scaffold_109 unplaced-scaffold na na JBPJSG010000049.1 = NW_027509875.1 Primary Assembly 1051316 na Scaffold_100 unplaced-scaffold na na JBPJSG010000051.1 = NW_027509869.1 Primary Assembly 560125 na Scaffold_102 unplaced-scaffold na na JBPJSG010000052.1 = NW_027509870.1 Primary Assembly 531029 na Scaffold_103 unplaced-scaffold na na JBPJSG010000053.1 = NW_027509871.1 Primary Assembly 520879 na Scaffold_120 unplaced-scaffold na na JBPJSG010000054.1 = NW_027509880.1 Primary Assembly 445898 na Scaffold_93 unplaced-scaffold na na JBPJSG010000055.1 = NW_027510120.1 Primary Assembly 438962 na Scaffold_125 unplaced-scaffold na na JBPJSG010000056.1 = NW_027509881.1 Primary Assembly 410646 na Scaffold_131 unplaced-scaffold na na JBPJSG010000057.1 = NW_027509882.1 Primary Assembly 372691 na Scaffold_135 unplaced-scaffold na na JBPJSG010000058.1 = NW_027509883.1 Primary Assembly 368448 na Scaffold_92 unplaced-scaffold na na JBPJSG010000059.1 = NW_027510119.1 Primary Assembly 364124 na Scaffold_140 unplaced-scaffold na na JBPJSG010000060.1 = NW_027509884.1 Primary Assembly 350315 na Scaffold_141 unplaced-scaffold na na JBPJSG010000061.1 = NW_027509885.1 Primary Assembly 344928 na Scaffold_150 unplaced-scaffold na na JBPJSG010000062.1 = NW_027509886.1 Primary Assembly 301361 na Scaffold_162 unplaced-scaffold na na JBPJSG010000064.1 = NW_027509887.1 Primary Assembly 265953 na Scaffold_168 unplaced-scaffold na na JBPJSG010000065.1 = NW_027509888.1 Primary Assembly 253729 na Scaffold_173 unplaced-scaffold na na JBPJSG010000066.1 = NW_027509889.1 Primary Assembly 237963 na Scaffold_98 unplaced-scaffold na na JBPJSG010000067.1 = NW_027510121.1 Primary Assembly 236061 na Scaffold_179 unplaced-scaffold na na JBPJSG010000068.1 = NW_027509890.1 Primary Assembly 226345 na Scaffold_180 unplaced-scaffold na na JBPJSG010000069.1 = NW_027509891.1 Primary Assembly 223840 na Scaffold_91 unplaced-scaffold na na JBPJSG010000070.1 = NW_027510118.1 Primary Assembly 218474 na Scaffold_184 unplaced-scaffold na na JBPJSG010000071.1 = NW_027509892.1 Primary Assembly 215458 na Scaffold_197 unplaced-scaffold na na JBPJSG010000072.1 = NW_027509893.1 Primary Assembly 197340 na Scaffold_198 unplaced-scaffold na na JBPJSG010000073.1 = NW_027509894.1 Primary Assembly 192866 na Scaffold_205 unplaced-scaffold na na JBPJSG010000074.1 = NW_027509895.1 Primary Assembly 185988 na Scaffold_211 unplaced-scaffold na na JBPJSG010000075.1 = NW_027509896.1 Primary Assembly 178549 na Scaffold_218 unplaced-scaffold na na JBPJSG010000076.1 = NW_027509897.1 Primary Assembly 170135 na Scaffold_221 unplaced-scaffold na na JBPJSG010000077.1 = NW_027509898.1 Primary Assembly 167153 na Scaffold_222 unplaced-scaffold na na JBPJSG010000078.1 = NW_027509899.1 Primary Assembly 166317 na Scaffold_225 unplaced-scaffold na na JBPJSG010000079.1 = NW_027509900.1 Primary Assembly 161515 na Scaffold_226 unplaced-scaffold na na JBPJSG010000080.1 = NW_027509901.1 Primary Assembly 161382 na Scaffold_230 unplaced-scaffold na na JBPJSG010000081.1 = NW_027509902.1 Primary Assembly 158603 na Scaffold_231 unplaced-scaffold na na JBPJSG010000082.1 = NW_027509903.1 Primary Assembly 158113 na Scaffold_232 unplaced-scaffold na na JBPJSG010000083.1 = NW_027509904.1 Primary Assembly 157225 na Scaffold_233 unplaced-scaffold na na JBPJSG010000084.1 = NW_027509905.1 Primary Assembly 156190 na Scaffold_235 unplaced-scaffold na na JBPJSG010000085.1 = NW_027509906.1 Primary Assembly 154478 na Scaffold_239 unplaced-scaffold na na JBPJSG010000086.1 = NW_027509907.1 Primary Assembly 149240 na Scaffold_242 unplaced-scaffold na na JBPJSG010000087.1 = NW_027509908.1 Primary Assembly 143731 na Scaffold_247 unplaced-scaffold na na JBPJSG010000088.1 = NW_027509909.1 Primary Assembly 141156 na Scaffold_252 unplaced-scaffold na na JBPJSG010000089.1 = NW_027509910.1 Primary Assembly 138129 na Scaffold_253 unplaced-scaffold na na JBPJSG010000090.1 = NW_027509911.1 Primary Assembly 137986 na Scaffold_254 unplaced-scaffold na na JBPJSG010000091.1 = NW_027509912.1 Primary Assembly 137603 na Scaffold_256 unplaced-scaffold na na JBPJSG010000092.1 = NW_027509913.1 Primary Assembly 136131 na Scaffold_258 unplaced-scaffold na na JBPJSG010000093.1 = NW_027509914.1 Primary Assembly 135988 na Scaffold_260 unplaced-scaffold na na JBPJSG010000094.1 = NW_027509915.1 Primary Assembly 133797 na Scaffold_261 unplaced-scaffold na na JBPJSG010000095.1 = NW_027509916.1 Primary Assembly 132940 na Scaffold_262 unplaced-scaffold na na JBPJSG010000096.1 = NW_027509917.1 Primary Assembly 132809 na Scaffold_263 unplaced-scaffold na na JBPJSG010000097.1 = NW_027509918.1 Primary Assembly 132583 na Scaffold_269 unplaced-scaffold na na JBPJSG010000098.1 = NW_027509919.1 Primary Assembly 128994 na Scaffold_278 unplaced-scaffold na na JBPJSG010000099.1 = NW_027509920.1 Primary Assembly 122698 na Scaffold_280 unplaced-scaffold na na JBPJSG010000100.1 = NW_027509921.1 Primary Assembly 122511 na Scaffold_281 unplaced-scaffold na na JBPJSG010000101.1 = NW_027509922.1 Primary Assembly 122145 na Scaffold_283 unplaced-scaffold na na JBPJSG010000103.1 = NW_027509923.1 Primary Assembly 117878 na Scaffold_287 unplaced-scaffold na na JBPJSG010000104.1 = NW_027509924.1 Primary Assembly 113073 na Scaffold_289 unplaced-scaffold na na JBPJSG010000105.1 = NW_027509925.1 Primary Assembly 112379 na Scaffold_291 unplaced-scaffold na na JBPJSG010000106.1 = NW_027509926.1 Primary Assembly 111638 na Scaffold_295 unplaced-scaffold na na JBPJSG010000107.1 = NW_027509927.1 Primary Assembly 109509 na Scaffold_296 unplaced-scaffold na na JBPJSG010000108.1 = NW_027509928.1 Primary Assembly 109470 na Scaffold_298 unplaced-scaffold na na JBPJSG010000109.1 = NW_027509929.1 Primary Assembly 109235 na Scaffold_532 unplaced-scaffold na na JBPJSG010000110.1 = NW_027510074.1 Primary Assembly 108952 na Scaffold_301 unplaced-scaffold na na JBPJSG010000111.1 = NW_027509930.1 Primary Assembly 108120 na Scaffold_302 unplaced-scaffold na na JBPJSG010000112.1 = NW_027509931.1 Primary Assembly 108018 na Scaffold_303 unplaced-scaffold na na JBPJSG010000113.1 = NW_027509932.1 Primary Assembly 107835 na Scaffold_304 unplaced-scaffold na na JBPJSG010000114.1 = NW_027509933.1 Primary Assembly 107199 na Scaffold_305 unplaced-scaffold na na JBPJSG010000115.1 = NW_027509934.1 Primary Assembly 106597 na Scaffold_306 unplaced-scaffold na na JBPJSG010000116.1 = NW_027509935.1 Primary Assembly 106211 na Scaffold_311 unplaced-scaffold na na JBPJSG010000117.1 = NW_027509936.1 Primary Assembly 103548 na Scaffold_316 unplaced-scaffold na na JBPJSG010000118.1 = NW_027509937.1 Primary Assembly 101147 na Scaffold_321 unplaced-scaffold na na JBPJSG010000119.1 = NW_027509938.1 Primary Assembly 98423 na Scaffold_325 unplaced-scaffold na na JBPJSG010000120.1 = NW_027509939.1 Primary Assembly 96220 na Scaffold_326 unplaced-scaffold na na JBPJSG010000121.1 = NW_027509940.1 Primary Assembly 95926 na Scaffold_327 unplaced-scaffold na na JBPJSG010000122.1 = NW_027509941.1 Primary Assembly 94935 na Scaffold_328 unplaced-scaffold na na JBPJSG010000123.1 = NW_027509942.1 Primary Assembly 94552 na Scaffold_118 unplaced-scaffold na na JBPJSG010000124.1 = NW_027509879.1 Primary Assembly 93832 na Scaffold_331 unplaced-scaffold na na JBPJSG010000125.1 = NW_027509943.1 Primary Assembly 93383 na Scaffold_332 unplaced-scaffold na na JBPJSG010000126.1 = NW_027509944.1 Primary Assembly 92786 na Scaffold_334 unplaced-scaffold na na JBPJSG010000127.1 = NW_027509945.1 Primary Assembly 91722 na Scaffold_336 unplaced-scaffold na na JBPJSG010000128.1 = NW_027509946.1 Primary Assembly 90845 na Scaffold_339 unplaced-scaffold na na JBPJSG010000129.1 = NW_027509947.1 Primary Assembly 89384 na Scaffold_340 unplaced-scaffold na na JBPJSG010000130.1 = NW_027509948.1 Primary Assembly 89089 na Scaffold_341 unplaced-scaffold na na JBPJSG010000131.1 = NW_027509949.1 Primary Assembly 88665 na Scaffold_342 unplaced-scaffold na na JBPJSG010000132.1 = NW_027509950.1 Primary Assembly 88213 na Scaffold_345 unplaced-scaffold na na JBPJSG010000133.1 = NW_027509951.1 Primary Assembly 87048 na Scaffold_346 unplaced-scaffold na na JBPJSG010000134.1 = NW_027509952.1 Primary Assembly 86944 na Scaffold_347 unplaced-scaffold na na JBPJSG010000135.1 = NW_027509953.1 Primary Assembly 86260 na Scaffold_351 unplaced-scaffold na na JBPJSG010000136.1 = NW_027509954.1 Primary Assembly 84999 na Scaffold_355 unplaced-scaffold na na JBPJSG010000137.1 = NW_027509955.1 Primary Assembly 84046 na Scaffold_359 unplaced-scaffold na na JBPJSG010000138.1 = NW_027509956.1 Primary Assembly 83137 na Scaffold_360 unplaced-scaffold na na JBPJSG010000139.1 = NW_027509957.1 Primary Assembly 83110 na Scaffold_361 unplaced-scaffold na na JBPJSG010000140.1 = NW_027509958.1 Primary Assembly 82949 na Scaffold_362 unplaced-scaffold na na JBPJSG010000141.1 = NW_027509959.1 Primary Assembly 82899 na Scaffold_363 unplaced-scaffold na na JBPJSG010000142.1 = NW_027509960.1 Primary Assembly 82099 na Scaffold_364 unplaced-scaffold na na JBPJSG010000143.1 = NW_027509961.1 Primary Assembly 81912 na Scaffold_367 unplaced-scaffold na na JBPJSG010000144.1 = NW_027509962.1 Primary Assembly 80613 na Scaffold_368 unplaced-scaffold na na JBPJSG010000145.1 = NW_027509963.1 Primary Assembly 80388 na Scaffold_533 unplaced-scaffold na na JBPJSG010000146.1 = NW_027510075.1 Primary Assembly 80091 na Scaffold_369 unplaced-scaffold na na JBPJSG010000147.1 = NW_027509964.1 Primary Assembly 79853 na Scaffold_370 unplaced-scaffold na na JBPJSG010000148.1 = NW_027509965.1 Primary Assembly 79660 na Scaffold_371 unplaced-scaffold na na JBPJSG010000149.1 = NW_027509966.1 Primary Assembly 79281 na Scaffold_373 unplaced-scaffold na na JBPJSG010000150.1 = NW_027509967.1 Primary Assembly 79160 na Scaffold_374 unplaced-scaffold na na JBPJSG010000151.1 = NW_027509968.1 Primary Assembly 79032 na Scaffold_375 unplaced-scaffold na na JBPJSG010000152.1 = NW_027509969.1 Primary Assembly 78734 na Scaffold_376 unplaced-scaffold na na JBPJSG010000153.1 = NW_027509970.1 Primary Assembly 78510 na Scaffold_377 unplaced-scaffold na na JBPJSG010000154.1 = NW_027509971.1 Primary Assembly 78137 na Scaffold_378 unplaced-scaffold na na JBPJSG010000155.1 = NW_027509972.1 Primary Assembly 77491 na Scaffold_380 unplaced-scaffold na na JBPJSG010000156.1 = NW_027509973.1 Primary Assembly 77302 na Scaffold_381 unplaced-scaffold na na JBPJSG010000157.1 = NW_027509974.1 Primary Assembly 76822 na Scaffold_382 unplaced-scaffold na na JBPJSG010000158.1 = NW_027509975.1 Primary Assembly 76620 na Scaffold_383 unplaced-scaffold na na JBPJSG010000159.1 = NW_027509976.1 Primary Assembly 76617 na Scaffold_385 unplaced-scaffold na na JBPJSG010000160.1 = NW_027509977.1 Primary Assembly 75356 na Scaffold_387 unplaced-scaffold na na JBPJSG010000161.1 = NW_027509978.1 Primary Assembly 74843 na Scaffold_389 unplaced-scaffold na na JBPJSG010000162.1 = NW_027509979.1 Primary Assembly 74672 na Scaffold_390 unplaced-scaffold na na JBPJSG010000163.1 = NW_027509980.1 Primary Assembly 74404 na Scaffold_391 unplaced-scaffold na na JBPJSG010000164.1 = NW_027509981.1 Primary Assembly 74389 na Scaffold_392 unplaced-scaffold na na JBPJSG010000165.1 = NW_027509982.1 Primary Assembly 74186 na Scaffold_395 unplaced-scaffold na na JBPJSG010000166.1 = NW_027509983.1 Primary Assembly 73233 na Scaffold_104 unplaced-scaffold na na JBPJSG010000167.1 = NW_027509872.1 Primary Assembly 72824 na Scaffold_396 unplaced-scaffold na na JBPJSG010000169.1 = NW_027509984.1 Primary Assembly 72422 na Scaffold_397 unplaced-scaffold na na JBPJSG010000170.1 = NW_027509985.1 Primary Assembly 71961 na Scaffold_398 unplaced-scaffold na na JBPJSG010000171.1 = NW_027509986.1 Primary Assembly 71885 na Scaffold_400 unplaced-scaffold na na JBPJSG010000172.1 = NW_027509987.1 Primary Assembly 71358 na Scaffold_401 unplaced-scaffold na na JBPJSG010000173.1 = NW_027509988.1 Primary Assembly 71347 na Scaffold_403 unplaced-scaffold na na JBPJSG010000174.1 = NW_027509989.1 Primary Assembly 70533 na Scaffold_405 unplaced-scaffold na na JBPJSG010000175.1 = NW_027509990.1 Primary Assembly 69892 na Scaffold_407 unplaced-scaffold na na JBPJSG010000176.1 = NW_027509991.1 Primary Assembly 69371 na Scaffold_409 unplaced-scaffold na na JBPJSG010000177.1 = NW_027509992.1 Primary Assembly 69114 na Scaffold_729 unplaced-scaffold na na JBPJSG010000178.1 = NW_027510076.1 Primary Assembly 68849 na Scaffold_415 unplaced-scaffold na na JBPJSG010000179.1 = NW_027509993.1 Primary Assembly 66992 na Scaffold_416 unplaced-scaffold na na JBPJSG010000180.1 = NW_027509994.1 Primary Assembly 66755 na Scaffold_417 unplaced-scaffold na na JBPJSG010000181.1 = NW_027509995.1 Primary Assembly 66734 na Scaffold_419 unplaced-scaffold na na JBPJSG010000182.1 = NW_027509996.1 Primary Assembly 66165 na Scaffold_421 unplaced-scaffold na na JBPJSG010000183.1 = NW_027509997.1 Primary Assembly 66029 na Scaffold_422 unplaced-scaffold na na JBPJSG010000184.1 = NW_027509998.1 Primary Assembly 65421 na Scaffold_423 unplaced-scaffold na na JBPJSG010000185.1 = NW_027509999.1 Primary Assembly 65356 na Scaffold_425 unplaced-scaffold na na JBPJSG010000186.1 = NW_027510000.1 Primary Assembly 64781 na Scaffold_426 unplaced-scaffold na na JBPJSG010000187.1 = NW_027510001.1 Primary Assembly 64544 na Scaffold_427 unplaced-scaffold na na JBPJSG010000188.1 = NW_027510002.1 Primary Assembly 64513 na Scaffold_430 unplaced-scaffold na na JBPJSG010000189.1 = NW_027510003.1 Primary Assembly 63389 na Scaffold_431 unplaced-scaffold na na JBPJSG010000190.1 = NW_027510004.1 Primary Assembly 63082 na Scaffold_432 unplaced-scaffold na na JBPJSG010000191.1 = NW_027510005.1 Primary Assembly 63033 na Scaffold_433 unplaced-scaffold na na JBPJSG010000192.1 = NW_027510006.1 Primary Assembly 62834 na Scaffold_434 unplaced-scaffold na na JBPJSG010000193.1 = NW_027510007.1 Primary Assembly 62208 na Scaffold_436 unplaced-scaffold na na JBPJSG010000194.1 = NW_027510008.1 Primary Assembly 62143 na Scaffold_748 unplaced-scaffold na na JBPJSG010000195.1 = NW_027510077.1 Primary Assembly 62009 na Scaffold_437 unplaced-scaffold na na JBPJSG010000196.1 = NW_027510009.1 Primary Assembly 61022 na Scaffold_438 unplaced-scaffold na na JBPJSG010000197.1 = NW_027510010.1 Primary Assembly 60859 na Scaffold_439 unplaced-scaffold na na JBPJSG010000198.1 = NW_027510011.1 Primary Assembly 60703 na Scaffold_441 unplaced-scaffold na na JBPJSG010000199.1 = NW_027510012.1 Primary Assembly 60063 na Scaffold_753 unplaced-scaffold na na JBPJSG010000200.1 = NW_027510078.1 Primary Assembly 59969 na Scaffold_442 unplaced-scaffold na na JBPJSG010000201.1 = NW_027510013.1 Primary Assembly 59792 na Scaffold_444 unplaced-scaffold na na JBPJSG010000202.1 = NW_027510014.1 Primary Assembly 59618 na Scaffold_446 unplaced-scaffold na na JBPJSG010000203.1 = NW_027510015.1 Primary Assembly 59174 na Scaffold_448 unplaced-scaffold na na JBPJSG010000204.1 = NW_027510016.1 Primary Assembly 59050 na Scaffold_758 unplaced-scaffold na na JBPJSG010000205.1 = NW_027510079.1 Primary Assembly 58495 na Scaffold_450 unplaced-scaffold na na JBPJSG010000206.1 = NW_027510017.1 Primary Assembly 58477 na Scaffold_453 unplaced-scaffold na na JBPJSG010000207.1 = NW_027510018.1 Primary Assembly 58190 na Scaffold_454 unplaced-scaffold na na JBPJSG010000208.1 = NW_027510019.1 Primary Assembly 57938 na Scaffold_455 unplaced-scaffold na na JBPJSG010000209.1 = NW_027510020.1 Primary Assembly 57873 na Scaffold_457 unplaced-scaffold na na JBPJSG010000210.1 = NW_027510021.1 Primary Assembly 56709 na Scaffold_458 unplaced-scaffold na na JBPJSG010000211.1 = NW_027510022.1 Primary Assembly 56333 na Scaffold_460 unplaced-scaffold na na JBPJSG010000212.1 = NW_027510023.1 Primary Assembly 56256 na Scaffold_461 unplaced-scaffold na na JBPJSG010000213.1 = NW_027510024.1 Primary Assembly 55843 na Scaffold_767 unplaced-scaffold na na JBPJSG010000214.1 = NW_027510080.1 Primary Assembly 55793 na Scaffold_462 unplaced-scaffold na na JBPJSG010000215.1 = NW_027510025.1 Primary Assembly 54997 na Scaffold_464 unplaced-scaffold na na JBPJSG010000216.1 = NW_027510026.1 Primary Assembly 54424 na Scaffold_770 unplaced-scaffold na na JBPJSG010000217.1 = NW_027510081.1 Primary Assembly 54357 na Scaffold_465 unplaced-scaffold na na JBPJSG010000218.1 = NW_027510027.1 Primary Assembly 54108 na Scaffold_466 unplaced-scaffold na na JBPJSG010000219.1 = NW_027510028.1 Primary Assembly 53652 na Scaffold_773 unplaced-scaffold na na JBPJSG010000220.1 = NW_027510082.1 Primary Assembly 53456 na Scaffold_469 unplaced-scaffold na na JBPJSG010000221.1 = NW_027510029.1 Primary Assembly 53192 na Scaffold_470 unplaced-scaffold na na JBPJSG010000222.1 = NW_027510030.1 Primary Assembly 52732 na Scaffold_471 unplaced-scaffold na na JBPJSG010000223.1 = NW_027510031.1 Primary Assembly 52582 na Scaffold_472 unplaced-scaffold na na JBPJSG010000224.1 = NW_027510032.1 Primary Assembly 52407 na Scaffold_780 unplaced-scaffold na na JBPJSG010000225.1 = NW_027510083.1 Primary Assembly 52134 na Scaffold_473 unplaced-scaffold na na JBPJSG010000226.1 = NW_027510033.1 Primary Assembly 50699 na Scaffold_782 unplaced-scaffold na na JBPJSG010000227.1 = NW_027510084.1 Primary Assembly 50081 na Scaffold_475 unplaced-scaffold na na JBPJSG010000228.1 = NW_027510034.1 Primary Assembly 50063 na Scaffold_476 unplaced-scaffold na na JBPJSG010000229.1 = NW_027510035.1 Primary Assembly 50039 na Scaffold_477 unplaced-scaffold na na JBPJSG010000230.1 = NW_027510036.1 Primary Assembly 49843 na Scaffold_478 unplaced-scaffold na na JBPJSG010000231.1 = NW_027510037.1 Primary Assembly 49790 na Scaffold_787 unplaced-scaffold na na JBPJSG010000232.1 = NW_027510085.1 Primary Assembly 49620 na Scaffold_479 unplaced-scaffold na na JBPJSG010000233.1 = NW_027510038.1 Primary Assembly 49306 na Scaffold_480 unplaced-scaffold na na JBPJSG010000234.1 = NW_027510039.1 Primary Assembly 49198 na Scaffold_790 unplaced-scaffold na na JBPJSG010000235.1 = NW_027510086.1 Primary Assembly 48793 na Scaffold_481 unplaced-scaffold na na JBPJSG010000236.1 = NW_027510040.1 Primary Assembly 48654 na Scaffold_483 unplaced-scaffold na na JBPJSG010000237.1 = NW_027510041.1 Primary Assembly 47842 na Scaffold_484 unplaced-scaffold na na JBPJSG010000238.1 = NW_027510042.1 Primary Assembly 47825 na Scaffold_795 unplaced-scaffold na na JBPJSG010000239.1 = NW_027510087.1 Primary Assembly 46844 na Scaffold_487 unplaced-scaffold na na JBPJSG010000240.1 = NW_027510043.1 Primary Assembly 46697 na Scaffold_797 unplaced-scaffold na na JBPJSG010000241.1 = NW_027510088.1 Primary Assembly 46359 na Scaffold_489 unplaced-scaffold na na JBPJSG010000242.1 = NW_027510044.1 Primary Assembly 45632 na Scaffold_490 unplaced-scaffold na na JBPJSG010000243.1 = NW_027510045.1 Primary Assembly 44942 na Scaffold_800 unplaced-scaffold na na JBPJSG010000244.1 = NW_027510089.1 Primary Assembly 44853 na Scaffold_491 unplaced-scaffold na na JBPJSG010000245.1 = NW_027510046.1 Primary Assembly 44782 na Scaffold_492 unplaced-scaffold na na JBPJSG010000246.1 = NW_027510047.1 Primary Assembly 44466 na Scaffold_493 unplaced-scaffold na na JBPJSG010000247.1 = NW_027510048.1 Primary Assembly 44391 na Scaffold_805 unplaced-scaffold na na JBPJSG010000248.1 = NW_027510090.1 Primary Assembly 44047 na Scaffold_494 unplaced-scaffold na na JBPJSG010000249.1 = NW_027510049.1 Primary Assembly 43975 na Scaffold_495 unplaced-scaffold na na JBPJSG010000250.1 = NW_027510050.1 Primary Assembly 43407 na Scaffold_496 unplaced-scaffold na na JBPJSG010000251.1 = NW_027510051.1 Primary Assembly 43402 na Scaffold_809 unplaced-scaffold na na JBPJSG010000252.1 = NW_027510091.1 Primary Assembly 43242 na Scaffold_497 unplaced-scaffold na na JBPJSG010000253.1 = NW_027510052.1 Primary Assembly 43117 na Scaffold_811 unplaced-scaffold na na JBPJSG010000254.1 = NW_027510092.1 Primary Assembly 42661 na Scaffold_498 unplaced-scaffold na na JBPJSG010000255.1 = NW_027510053.1 Primary Assembly 42248 na Scaffold_499 unplaced-scaffold na na JBPJSG010000256.1 = NW_027510054.1 Primary Assembly 42070 na Scaffold_814 unplaced-scaffold na na JBPJSG010000257.1 = NW_027510093.1 Primary Assembly 41947 na Scaffold_815 unplaced-scaffold na na JBPJSG010000258.1 = NW_027510094.1 Primary Assembly 41900 na Scaffold_816 unplaced-scaffold na na JBPJSG010000259.1 = NW_027510095.1 Primary Assembly 41223 na Scaffold_503 unplaced-scaffold na na JBPJSG010000260.1 = NW_027510055.1 Primary Assembly 40850 na Scaffold_818 unplaced-scaffold na na JBPJSG010000261.1 = NW_027510096.1 Primary Assembly 40649 na Scaffold_820 unplaced-scaffold na na JBPJSG010000262.1 = NW_027510097.1 Primary Assembly 40275 na Scaffold_505 unplaced-scaffold na na JBPJSG010000263.1 = NW_027510056.1 Primary Assembly 40203 na Scaffold_822 unplaced-scaffold na na JBPJSG010000264.1 = NW_027510098.1 Primary Assembly 40190 na Scaffold_823 unplaced-scaffold na na JBPJSG010000265.1 = NW_027510099.1 Primary Assembly 39717 na Scaffold_826 unplaced-scaffold na na JBPJSG010000266.1 = NW_027510100.1 Primary Assembly 39212 na Scaffold_510 unplaced-scaffold na na JBPJSG010000267.1 = NW_027510057.1 Primary Assembly 39148 na Scaffold_828 unplaced-scaffold na na JBPJSG010000268.1 = NW_027510101.1 Primary Assembly 39033 na Scaffold_511 unplaced-scaffold na na JBPJSG010000269.1 = NW_027510058.1 Primary Assembly 38813 na Scaffold_512 unplaced-scaffold na na JBPJSG010000270.1 = NW_027510059.1 Primary Assembly 38595 na Scaffold_832 unplaced-scaffold na na JBPJSG010000271.1 = NW_027510102.1 Primary Assembly 38432 na Scaffold_513 unplaced-scaffold na na JBPJSG010000272.1 = NW_027510060.1 Primary Assembly 38233 na Scaffold_835 unplaced-scaffold na na JBPJSG010000273.1 = NW_027510103.1 Primary Assembly 37661 na Scaffold_515 unplaced-scaffold na na JBPJSG010000274.1 = NW_027510061.1 Primary Assembly 37611 na Scaffold_837 unplaced-scaffold na na JBPJSG010000275.1 = NW_027510104.1 Primary Assembly 37585 na Scaffold_516 unplaced-scaffold na na JBPJSG010000276.1 = NW_027510062.1 Primary Assembly 37367 na Scaffold_839 unplaced-scaffold na na JBPJSG010000277.1 = NW_027510105.1 Primary Assembly 37312 na Scaffold_517 unplaced-scaffold na na JBPJSG010000278.1 = NW_027510063.1 Primary Assembly 37260 na Scaffold_841 unplaced-scaffold na na JBPJSG010000279.1 = NW_027510106.1 Primary Assembly 36598 na Scaffold_519 unplaced-scaffold na na JBPJSG010000280.1 = NW_027510064.1 Primary Assembly 36195 na Scaffold_843 unplaced-scaffold na na JBPJSG010000281.1 = NW_027510107.1 Primary Assembly 35614 na Scaffold_520 unplaced-scaffold na na JBPJSG010000282.1 = NW_027510065.1 Primary Assembly 35073 na Scaffold_521 unplaced-scaffold na na JBPJSG010000283.1 = NW_027510066.1 Primary Assembly 33494 na Scaffold_846 unplaced-scaffold na na JBPJSG010000284.1 = NW_027510108.1 Primary Assembly 33301 na Scaffold_522 unplaced-scaffold na na JBPJSG010000285.1 = NW_027510067.1 Primary Assembly 32925 na Scaffold_848 unplaced-scaffold na na JBPJSG010000286.1 = NW_027510109.1 Primary Assembly 32891 na Scaffold_523 unplaced-scaffold na na JBPJSG010000287.1 = NW_027510068.1 Primary Assembly 32880 na Scaffold_850 unplaced-scaffold na na JBPJSG010000288.1 = NW_027510110.1 Primary Assembly 32259 na Scaffold_524 unplaced-scaffold na na JBPJSG010000289.1 = NW_027510069.1 Primary Assembly 32189 na Scaffold_853 unplaced-scaffold na na JBPJSG010000290.1 = NW_027510111.1 Primary Assembly 30897 na Scaffold_526 unplaced-scaffold na na JBPJSG010000291.1 = NW_027510070.1 Primary Assembly 30646 na Scaffold_855 unplaced-scaffold na na JBPJSG010000292.1 = NW_027510112.1 Primary Assembly 29746 na Scaffold_527 unplaced-scaffold na na JBPJSG010000293.1 = NW_027510071.1 Primary Assembly 29301 na Scaffold_857 unplaced-scaffold na na JBPJSG010000294.1 = NW_027510113.1 Primary Assembly 28998 na Scaffold_858 unplaced-scaffold na na JBPJSG010000295.1 = NW_027510114.1 Primary Assembly 28276 na Scaffold_528 unplaced-scaffold na na JBPJSG010000296.1 = NW_027510072.1 Primary Assembly 27790 na Scaffold_860 unplaced-scaffold na na JBPJSG010000297.1 = NW_027510115.1 Primary Assembly 26009 na Scaffold_861 unplaced-scaffold na na JBPJSG010000298.1 = NW_027510116.1 Primary Assembly 25445 na Scaffold_529 unplaced-scaffold na na JBPJSG010000299.1 = NW_027510073.1 Primary Assembly 20321 na Scaffold_863 unplaced-scaffold na na JBPJSG010000300.1 = NW_027510117.1 Primary Assembly 20203 na ptg000002l_rc_rotated assembled-molecule MT Mitochondrion CM119748.1 <> na non-nuclear 16774 na