# Assembly name: RoL_Snig_1.1 # Organism name: Stigmatopora nigra (wide-bodied pipefish) # Isolate: UIUO_SnigA # Sex: male # Taxid: 161582 # BioSample: SAMN50175182 # BioProject: PRJNA851781 # Submitter: University of Idaho at Moscow # Date: 2025-08-13 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBPVJA01 # Assembly method: Hifiasm v. 0.16.1; Juicer v. 1.22.01; 3D-DNA v. 180922 # Expected final version: yes # Genome coverage: 107.0x # Sequencing technology: PacBio HiFi; Phase Genomics HiC # RefSeq category: Reference Genome # GenBank assembly accession: GCA_051989575.2 # RefSeq assembly accession: GCF_051989575.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_051989755.2 GCF_051989755.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name HiC_scaffold_1 assembled-molecule 1 Chromosome CM124026.1 = NC_135508.1 Primary Assembly 26987674 na HiC_scaffold_2 assembled-molecule 2 Chromosome CM124027.1 = NC_135509.1 Primary Assembly 20414215 na HiC_scaffold_3 assembled-molecule 3 Chromosome CM124028.1 = NC_135510.1 Primary Assembly 19854636 na HiC_scaffold_4 assembled-molecule 4 Chromosome CM124029.1 = NC_135511.1 Primary Assembly 19389351 na HiC_scaffold_5 assembled-molecule 5 Chromosome CM124030.1 = NC_135512.1 Primary Assembly 17410594 na HiC_scaffold_6 assembled-molecule 6 Chromosome CM124031.1 = NC_135513.1 Primary Assembly 16397451 na HiC_scaffold_7 assembled-molecule 7 Chromosome CM124032.1 = NC_135514.1 Primary Assembly 16303792 na HiC_scaffold_8 assembled-molecule 8 Chromosome CM124033.1 = NC_135515.1 Primary Assembly 15834847 na HiC_scaffold_9 assembled-molecule 9 Chromosome CM124034.1 = NC_135516.1 Primary Assembly 15409685 na HiC_scaffold_10 assembled-molecule 10 Chromosome CM124035.1 = NC_135517.1 Primary Assembly 15295003 na HiC_scaffold_11 assembled-molecule 11 Chromosome CM124036.1 = NC_135518.1 Primary Assembly 15078100 na HiC_scaffold_12 assembled-molecule 12 Chromosome CM124037.1 = NC_135519.1 Primary Assembly 14544870 na HiC_scaffold_13 assembled-molecule 13 Chromosome CM124038.1 = NC_135520.1 Primary Assembly 13669651 na HiC_scaffold_14 assembled-molecule 14 Chromosome CM124039.1 = NC_135521.1 Primary Assembly 13611602 na HiC_scaffold_15 assembled-molecule 15 Chromosome CM124040.1 = NC_135522.1 Primary Assembly 13240139 na HiC_scaffold_16 assembled-molecule 16 Chromosome CM124041.1 = NC_135523.1 Primary Assembly 12907290 na HiC_scaffold_17 assembled-molecule 17 Chromosome CM124042.1 = NC_135524.1 Primary Assembly 12300196 na HiC_scaffold_18 assembled-molecule 18 Chromosome CM124043.1 = NC_135525.1 Primary Assembly 12195886 na HiC_scaffold_19 assembled-molecule 19 Chromosome CM124044.1 = NC_135526.1 Primary Assembly 11080171 na HiC_scaffold_20 assembled-molecule 20 Chromosome CM124045.1 = NC_135527.1 Primary Assembly 10294999 na HiC_scaffold_21 assembled-molecule 21 Chromosome CM124046.1 = NC_135528.1 Primary Assembly 9959843 na HiC_scaffold_22 assembled-molecule 22 Chromosome CM124047.1 = NC_135529.1 Primary Assembly 9387579 na HiC_scaffold_23 assembled-molecule 23 Chromosome CM124048.1 = NC_135530.1 Primary Assembly 9028688 na HiC_scaffold_24 unplaced-scaffold na na JBPVJA010000024.1 = NW_027551603.1 Primary Assembly 5744314 na HiC_scaffold_25 unplaced-scaffold na na JBPVJA010000025.1 = NW_027551604.1 Primary Assembly 4337680 na HiC_scaffold_26 unplaced-scaffold na na JBPVJA010000026.1 = NW_027551605.1 Primary Assembly 2497997 na HiC_scaffold_27 unplaced-scaffold na na JBPVJA010000027.1 = NW_027551606.1 Primary Assembly 2333362 na HiC_scaffold_28 unplaced-scaffold na na JBPVJA010000028.1 = NW_027551607.1 Primary Assembly 2099218 na HiC_scaffold_29 unplaced-scaffold na na JBPVJA010000029.1 = NW_027551608.1 Primary Assembly 1962972 na HiC_scaffold_30 unplaced-scaffold na na JBPVJA010000030.1 = NW_027551609.1 Primary Assembly 1696925 na HiC_scaffold_31 unplaced-scaffold na na JBPVJA010000031.1 = NW_027551610.1 Primary Assembly 1493505 na HiC_scaffold_32 unplaced-scaffold na na JBPVJA010000032.1 = NW_027551611.1 Primary Assembly 1207836 na HiC_scaffold_33 unplaced-scaffold na na JBPVJA010000033.1 = NW_027551612.1 Primary Assembly 791725 na HiC_scaffold_34 unplaced-scaffold na na JBPVJA010000034.1 = NW_027551613.1 Primary Assembly 576468 na HiC_scaffold_35 unplaced-scaffold na na JBPVJA010000035.1 = NW_027551614.1 Primary Assembly 563291 na HiC_scaffold_36 unplaced-scaffold na na JBPVJA010000036.1 = NW_027551615.1 Primary Assembly 526792 na HiC_scaffold_37 unplaced-scaffold na na JBPVJA010000037.1 = NW_027551616.1 Primary Assembly 438957 na HiC_scaffold_38 unplaced-scaffold na na JBPVJA010000038.1 = NW_027551617.1 Primary Assembly 361663 na HiC_scaffold_39 unplaced-scaffold na na JBPVJA010000039.1 = NW_027551618.1 Primary Assembly 307147 na HiC_scaffold_40 unplaced-scaffold na na JBPVJA010000040.1 = NW_027551619.1 Primary Assembly 303243 na HiC_scaffold_41 unplaced-scaffold na na JBPVJA010000041.1 = NW_027551620.1 Primary Assembly 285263 na HiC_scaffold_42 unplaced-scaffold na na JBPVJA010000042.1 = NW_027551621.1 Primary Assembly 263891 na HiC_scaffold_43 unplaced-scaffold na na JBPVJA010000043.1 = NW_027551622.1 Primary Assembly 236982 na HiC_scaffold_44 unplaced-scaffold na na JBPVJA010000044.1 = NW_027551623.1 Primary Assembly 232153 na HiC_scaffold_45 unplaced-scaffold na na JBPVJA010000045.1 = NW_027551624.1 Primary Assembly 224829 na HiC_scaffold_46 unplaced-scaffold na na JBPVJA010000046.1 = NW_027551625.1 Primary Assembly 200073 na HiC_scaffold_47 unplaced-scaffold na na JBPVJA010000047.1 = NW_027551626.1 Primary Assembly 199331 na HiC_scaffold_48 unplaced-scaffold na na JBPVJA010000048.1 = NW_027551627.1 Primary Assembly 181859 na HiC_scaffold_49 unplaced-scaffold na na JBPVJA010000049.1 = NW_027551628.1 Primary Assembly 174704 na HiC_scaffold_50 unplaced-scaffold na na JBPVJA010000050.1 = NW_027551629.1 Primary Assembly 173514 na HiC_scaffold_51 unplaced-scaffold na na JBPVJA010000051.1 = NW_027551630.1 Primary Assembly 173218 na HiC_scaffold_52 unplaced-scaffold na na JBPVJA010000052.1 = NW_027551631.1 Primary Assembly 164156 na HiC_scaffold_53 unplaced-scaffold na na JBPVJA010000053.1 = NW_027551632.1 Primary Assembly 150749 na HiC_scaffold_55 unplaced-scaffold na na JBPVJA010000054.1 = NW_027551633.1 Primary Assembly 144110 na HiC_scaffold_56 unplaced-scaffold na na JBPVJA010000055.1 = NW_027551634.1 Primary Assembly 134624 na HiC_scaffold_57 unplaced-scaffold na na JBPVJA010000056.1 = NW_027551635.1 Primary Assembly 133924 na HiC_scaffold_58 unplaced-scaffold na na JBPVJA010000057.1 = NW_027551636.1 Primary Assembly 130416 na HiC_scaffold_59 unplaced-scaffold na na JBPVJA010000058.1 = NW_027551637.1 Primary Assembly 127585 na HiC_scaffold_60 unplaced-scaffold na na JBPVJA010000059.1 = NW_027551638.1 Primary Assembly 120940 na HiC_scaffold_61 unplaced-scaffold na na JBPVJA010000060.1 = NW_027551639.1 Primary Assembly 120409 na HiC_scaffold_62 unplaced-scaffold na na JBPVJA010000061.1 = NW_027551640.1 Primary Assembly 120294 na HiC_scaffold_63 unplaced-scaffold na na JBPVJA010000062.1 = NW_027551641.1 Primary Assembly 120077 na HiC_scaffold_64 unplaced-scaffold na na JBPVJA010000063.1 = NW_027551642.1 Primary Assembly 103249 na HiC_scaffold_65 unplaced-scaffold na na JBPVJA010000064.1 = NW_027551643.1 Primary Assembly 99599 na HiC_scaffold_66 unplaced-scaffold na na JBPVJA010000065.1 = NW_027551644.1 Primary Assembly 99344 na HiC_scaffold_68 unplaced-scaffold na na JBPVJA010000066.1 = NW_027551645.1 Primary Assembly 87443 na HiC_scaffold_69 unplaced-scaffold na na JBPVJA010000067.1 = NW_027551646.1 Primary Assembly 83735 na HiC_scaffold_70 unplaced-scaffold na na JBPVJA010000068.1 = NW_027551647.1 Primary Assembly 82583 na HiC_scaffold_71 unplaced-scaffold na na JBPVJA010000069.1 = NW_027551648.1 Primary Assembly 80067 na HiC_scaffold_72 unplaced-scaffold na na JBPVJA010000070.1 = NW_027551649.1 Primary Assembly 79782 na HiC_scaffold_74 unplaced-scaffold na na JBPVJA010000071.1 = NW_027551650.1 Primary Assembly 74713 na HiC_scaffold_75 unplaced-scaffold na na JBPVJA010000072.1 = NW_027551651.1 Primary Assembly 72988 na HiC_scaffold_76 unplaced-scaffold na na JBPVJA010000073.1 = NW_027551652.1 Primary Assembly 71602 na HiC_scaffold_78 unplaced-scaffold na na JBPVJA010000074.1 = NW_027551653.1 Primary Assembly 68706 na HiC_scaffold_81 unplaced-scaffold na na JBPVJA010000075.1 = NW_027551654.1 Primary Assembly 65330 na HiC_scaffold_83 unplaced-scaffold na na JBPVJA010000076.1 = NW_027551655.1 Primary Assembly 58898 na HiC_scaffold_84 unplaced-scaffold na na JBPVJA010000077.1 = NW_027551656.1 Primary Assembly 58864 na HiC_scaffold_85 unplaced-scaffold na na JBPVJA010000078.1 = NW_027551657.1 Primary Assembly 56352 na HiC_scaffold_86 unplaced-scaffold na na JBPVJA010000079.1 = NW_027551658.1 Primary Assembly 55036 na HiC_scaffold_87 unplaced-scaffold na na JBPVJA010000080.1 = NW_027551659.1 Primary Assembly 54454 na HiC_scaffold_88 unplaced-scaffold na na JBPVJA010000081.1 = NW_027551660.1 Primary Assembly 53428 na HiC_scaffold_92 unplaced-scaffold na na JBPVJA010000082.1 = NW_027551661.1 Primary Assembly 52267 na HiC_scaffold_93 unplaced-scaffold na na JBPVJA010000083.1 = NW_027551662.1 Primary Assembly 52047 na HiC_scaffold_94 unplaced-scaffold na na JBPVJA010000084.1 = NW_027551663.1 Primary Assembly 50479 na HiC_scaffold_95 unplaced-scaffold na na JBPVJA010000085.1 = NW_027551664.1 Primary Assembly 50344 na HiC_scaffold_98 unplaced-scaffold na na JBPVJA010000086.1 = NW_027551665.1 Primary Assembly 48608 na HiC_scaffold_99 unplaced-scaffold na na JBPVJA010000087.1 = NW_027551666.1 Primary Assembly 46825 na HiC_scaffold_104 unplaced-scaffold na na JBPVJA010000088.1 = NW_027551667.1 Primary Assembly 44165 na HiC_scaffold_111 unplaced-scaffold na na JBPVJA010000090.1 = NW_027551668.1 Primary Assembly 42142 na HiC_scaffold_112 unplaced-scaffold na na JBPVJA010000091.1 = NW_027551669.1 Primary Assembly 41916 na HiC_scaffold_113 unplaced-scaffold na na JBPVJA010000092.1 = NW_027551670.1 Primary Assembly 41809 na HiC_scaffold_114 unplaced-scaffold na na JBPVJA010000093.1 = NW_027551671.1 Primary Assembly 41339 na HiC_scaffold_115 unplaced-scaffold na na JBPVJA010000094.1 = NW_027551672.1 Primary Assembly 41281 na HiC_scaffold_116 unplaced-scaffold na na JBPVJA010000095.1 = NW_027551673.1 Primary Assembly 40966 na HiC_scaffold_117 unplaced-scaffold na na JBPVJA010000096.1 = NW_027551674.1 Primary Assembly 40681 na HiC_scaffold_118 unplaced-scaffold na na JBPVJA010000097.1 = NW_027551675.1 Primary Assembly 40369 na HiC_scaffold_124 unplaced-scaffold na na JBPVJA010000101.1 = NW_027551676.1 Primary Assembly 38968 na HiC_scaffold_125 unplaced-scaffold na na JBPVJA010000102.1 = NW_027551677.1 Primary Assembly 37946 na HiC_scaffold_126 unplaced-scaffold na na JBPVJA010000103.1 = NW_027551678.1 Primary Assembly 37905 na HiC_scaffold_127 unplaced-scaffold na na JBPVJA010000104.1 = NW_027551679.1 Primary Assembly 37837 na HiC_scaffold_129 unplaced-scaffold na na JBPVJA010000105.1 = NW_027551680.1 Primary Assembly 37455 na HiC_scaffold_131 unplaced-scaffold na na JBPVJA010000106.1 = NW_027551681.1 Primary Assembly 37246 na HiC_scaffold_132 unplaced-scaffold na na JBPVJA010000107.1 = NW_027551682.1 Primary Assembly 37222 na HiC_scaffold_139 unplaced-scaffold na na JBPVJA010000108.1 = NW_027551683.1 Primary Assembly 36247 na HiC_scaffold_140 unplaced-scaffold na na JBPVJA010000109.1 = NW_027551684.1 Primary Assembly 36190 na HiC_scaffold_141 unplaced-scaffold na na JBPVJA010000110.1 = NW_027551685.1 Primary Assembly 35934 na HiC_scaffold_145 unplaced-scaffold na na JBPVJA010000112.1 = NW_027551686.1 Primary Assembly 35401 na HiC_scaffold_146 unplaced-scaffold na na JBPVJA010000113.1 = NW_027551687.1 Primary Assembly 35196 na HiC_scaffold_152 unplaced-scaffold na na JBPVJA010000114.1 = NW_027551688.1 Primary Assembly 33873 na HiC_scaffold_154 unplaced-scaffold na na JBPVJA010000115.1 = NW_027551689.1 Primary Assembly 33659 na HiC_scaffold_158 unplaced-scaffold na na JBPVJA010000116.1 = NW_027551690.1 Primary Assembly 33207 na HiC_scaffold_159 unplaced-scaffold na na JBPVJA010000117.1 = NW_027551691.1 Primary Assembly 32997 na HiC_scaffold_161 unplaced-scaffold na na JBPVJA010000118.1 = NW_027551692.1 Primary Assembly 32909 na HiC_scaffold_166 unplaced-scaffold na na JBPVJA010000120.1 = NW_027551693.1 Primary Assembly 32500 na HiC_scaffold_168 unplaced-scaffold na na JBPVJA010000121.1 = NW_027551694.1 Primary Assembly 32432 na HiC_scaffold_172 unplaced-scaffold na na JBPVJA010000124.1 = NW_027551695.1 Primary Assembly 32118 na HiC_scaffold_173 unplaced-scaffold na na JBPVJA010000125.1 = NW_027551696.1 Primary Assembly 32061 na HiC_scaffold_174 unplaced-scaffold na na JBPVJA010000126.1 = NW_027551697.1 Primary Assembly 31957 na HiC_scaffold_180 unplaced-scaffold na na JBPVJA010000127.1 = NW_027551698.1 Primary Assembly 31449 na HiC_scaffold_186 unplaced-scaffold na na JBPVJA010000130.1 = NW_027551699.1 Primary Assembly 30874 na HiC_scaffold_189 unplaced-scaffold na na JBPVJA010000131.1 = NW_027551700.1 Primary Assembly 30400 na HiC_scaffold_193 unplaced-scaffold na na JBPVJA010000133.1 = NW_027551701.1 Primary Assembly 30019 na HiC_scaffold_198 unplaced-scaffold na na JBPVJA010000136.1 = NW_027551702.1 Primary Assembly 29394 na HiC_scaffold_205 unplaced-scaffold na na JBPVJA010000138.1 = NW_027551703.1 Primary Assembly 28627 na HiC_scaffold_208 unplaced-scaffold na na JBPVJA010000139.1 = NW_027551704.1 Primary Assembly 28421 na HiC_scaffold_210 unplaced-scaffold na na JBPVJA010000141.1 = NW_027551705.1 Primary Assembly 28268 na HiC_scaffold_221 unplaced-scaffold na na JBPVJA010000143.1 = NW_027551706.1 Primary Assembly 27114 na HiC_scaffold_225 unplaced-scaffold na na JBPVJA010000145.1 = NW_027551707.1 Primary Assembly 26513 na HiC_scaffold_226 unplaced-scaffold na na JBPVJA010000146.1 = NW_027551708.1 Primary Assembly 26384 na HiC_scaffold_229 unplaced-scaffold na na JBPVJA010000147.1 = NW_027551709.1 Primary Assembly 26205 na HiC_scaffold_231 unplaced-scaffold na na JBPVJA010000149.1 = NW_027551710.1 Primary Assembly 26053 na HiC_scaffold_234 unplaced-scaffold na na JBPVJA010000151.1 = NW_027551711.1 Primary Assembly 25189 na HiC_scaffold_242 unplaced-scaffold na na JBPVJA010000153.1 = NW_027551712.1 Primary Assembly 24255 na HiC_scaffold_243 unplaced-scaffold na na JBPVJA010000154.1 = NW_027551713.1 Primary Assembly 24047 na HiC_scaffold_246 unplaced-scaffold na na JBPVJA010000155.1 = NW_027551714.1 Primary Assembly 23622 na HiC_scaffold_247 unplaced-scaffold na na JBPVJA010000156.1 = NW_027551715.1 Primary Assembly 23587 na HiC_scaffold_248 unplaced-scaffold na na JBPVJA010000157.1 = NW_027551716.1 Primary Assembly 23466 na HiC_scaffold_250 unplaced-scaffold na na JBPVJA010000158.1 = NW_027551717.1 Primary Assembly 23359 na HiC_scaffold_251 unplaced-scaffold na na JBPVJA010000159.1 = NW_027551718.1 Primary Assembly 23299 na HiC_scaffold_252 unplaced-scaffold na na JBPVJA010000160.1 = NW_027551719.1 Primary Assembly 22929 na HiC_scaffold_254 unplaced-scaffold na na JBPVJA010000161.1 = NW_027551720.1 Primary Assembly 22798 na HiC_scaffold_256 unplaced-scaffold na na JBPVJA010000162.1 = NW_027551721.1 Primary Assembly 22582 na HiC_scaffold_258 unplaced-scaffold na na JBPVJA010000163.1 = NW_027551722.1 Primary Assembly 21983 na HiC_scaffold_261 unplaced-scaffold na na JBPVJA010000164.1 = NW_027551723.1 Primary Assembly 21871 na HiC_scaffold_262 unplaced-scaffold na na JBPVJA010000165.1 = NW_027551724.1 Primary Assembly 21624 na HiC_scaffold_263 unplaced-scaffold na na JBPVJA010000166.1 = NW_027551725.1 Primary Assembly 21550 na HiC_scaffold_264 unplaced-scaffold na na JBPVJA010000167.1 = NW_027551726.1 Primary Assembly 21498 na HiC_scaffold_271 unplaced-scaffold na na JBPVJA010000168.1 = NW_027551727.1 Primary Assembly 20000 na HiC_scaffold_272 unplaced-scaffold na na JBPVJA010000169.1 = NW_027551728.1 Primary Assembly 20000 na HiC_scaffold_273 unplaced-scaffold na na JBPVJA010000170.1 = NW_027551729.1 Primary Assembly 19466 na HiC_scaffold_277 unplaced-scaffold na na JBPVJA010000172.1 = NW_027551730.1 Primary Assembly 17745 na HiC_scaffold_279 unplaced-scaffold na na JBPVJA010000173.1 = NW_027551731.1 Primary Assembly 17523 na HiC_scaffold_281 unplaced-scaffold na na JBPVJA010000174.1 = NW_027551732.1 Primary Assembly 17326 na HiC_scaffold_282 unplaced-scaffold na na JBPVJA010000175.1 = NW_027551733.1 Primary Assembly 17199 na HiC_scaffold_284 unplaced-scaffold na na JBPVJA010000176.1 = NW_027551734.1 Primary Assembly 17161 na HiC_scaffold_289 unplaced-scaffold na na JBPVJA010000179.1 = NW_027551735.1 Primary Assembly 13086 na