# Assembly name: ASM5402589v1 # Organism name: Methanocaldococcus sp. (euryarchaeotes) # Isolate: 355-1-R3-1-177_bin.21 # Taxid: 2152917 # BioSample: SAMN49582985 # BioProject: PRJNA1244896 # Submitter: Portland State University # Date: 2025-12-16 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JBPMMO01 # Assembly method: MEGAHIT v. v1.2.9 # Expected final version: Yes # Genome coverage: 932.85x # Sequencing technology: Illumina NextSeq # Excluded from RefSeq: derived from metagenome # GenBank assembly accession: GCA_054025895.1 # RefSeq assembly accession: GCF_054025895.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_054025905.1 GCF_054025905.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name lcl_k127_48958 unplaced-scaffold na na JBPMMO010000001.1 = NZ_JBPMMO010000001.1 Primary Assembly 8208 na lcl_k127_183406 unplaced-scaffold na na JBPMMO010000002.1 = NZ_JBPMMO010000002.1 Primary Assembly 5296 na lcl_k127_237106 unplaced-scaffold na na JBPMMO010000003.1 = NZ_JBPMMO010000003.1 Primary Assembly 5758 na lcl_k127_208817 unplaced-scaffold na na JBPMMO010000004.1 = NZ_JBPMMO010000004.1 Primary Assembly 11693 na lcl_k127_101279 unplaced-scaffold na na JBPMMO010000005.1 = NZ_JBPMMO010000005.1 Primary Assembly 3706 na lcl_k127_363391 unplaced-scaffold na na JBPMMO010000006.1 = NZ_JBPMMO010000006.1 Primary Assembly 5387 na lcl_k127_234129 unplaced-scaffold na na JBPMMO010000007.1 = NZ_JBPMMO010000007.1 Primary Assembly 2701 na lcl_k127_233671 unplaced-scaffold na na JBPMMO010000008.1 = NZ_JBPMMO010000008.1 Primary Assembly 5135 na lcl_k127_311709 unplaced-scaffold na na JBPMMO010000009.1 = NZ_JBPMMO010000009.1 Primary Assembly 4182 na lcl_k127_151637 unplaced-scaffold na na JBPMMO010000010.1 = NZ_JBPMMO010000010.1 Primary Assembly 2097 na lcl_k127_42161 unplaced-scaffold na na JBPMMO010000011.1 = NZ_JBPMMO010000011.1 Primary Assembly 5142 na lcl_k127_122237 unplaced-scaffold na na JBPMMO010000012.1 = NZ_JBPMMO010000012.1 Primary Assembly 4772 na lcl_k127_122227 unplaced-scaffold na na JBPMMO010000013.1 = NZ_JBPMMO010000013.1 Primary Assembly 10321 na lcl_k127_31919 unplaced-scaffold na na JBPMMO010000014.1 = NZ_JBPMMO010000014.1 Primary Assembly 17087 na lcl_k127_91019 unplaced-scaffold na na JBPMMO010000015.1 = NZ_JBPMMO010000015.1 Primary Assembly 3245 na lcl_k127_245961 unplaced-scaffold na na JBPMMO010000016.1 = NZ_JBPMMO010000016.1 Primary Assembly 5240 na lcl_k127_137980 unplaced-scaffold na na JBPMMO010000017.1 = NZ_JBPMMO010000017.1 Primary Assembly 14681 na lcl_k127_30253 unplaced-scaffold na na JBPMMO010000018.1 = NZ_JBPMMO010000018.1 Primary Assembly 2643 na lcl_k127_162159 unplaced-scaffold na na JBPMMO010000019.1 = NZ_JBPMMO010000019.1 Primary Assembly 8075 na lcl_k127_228650 unplaced-scaffold na na JBPMMO010000020.1 = NZ_JBPMMO010000020.1 Primary Assembly 3868 na lcl_k127_110539 unplaced-scaffold na na JBPMMO010000021.1 = NZ_JBPMMO010000021.1 Primary Assembly 2896 na lcl_k127_271134 unplaced-scaffold na na JBPMMO010000022.1 = NZ_JBPMMO010000022.1 Primary Assembly 8008 na lcl_k127_162976 unplaced-scaffold na na JBPMMO010000023.1 = NZ_JBPMMO010000023.1 Primary Assembly 3977 na lcl_k127_182818 unplaced-scaffold na na JBPMMO010000024.1 = NZ_JBPMMO010000024.1 Primary Assembly 5153 na lcl_k127_90409 unplaced-scaffold na na JBPMMO010000025.1 = NZ_JBPMMO010000025.1 Primary Assembly 5073 na lcl_k127_245718 unplaced-scaffold na na JBPMMO010000026.1 = NZ_JBPMMO010000026.1 Primary Assembly 3540 na lcl_k127_269990 unplaced-scaffold na na JBPMMO010000027.1 = NZ_JBPMMO010000027.1 Primary Assembly 5405 na lcl_k127_296868 unplaced-scaffold na na JBPMMO010000028.1 = NZ_JBPMMO010000028.1 Primary Assembly 19589 na lcl_k127_243381 unplaced-scaffold na na JBPMMO010000029.1 = NZ_JBPMMO010000029.1 Primary Assembly 10607 na lcl_k127_191255 unplaced-scaffold na na JBPMMO010000030.1 = NZ_JBPMMO010000030.1 Primary Assembly 13464 na lcl_k127_179993 unplaced-scaffold na na JBPMMO010000031.1 = NZ_JBPMMO010000031.1 Primary Assembly 3446 na lcl_k127_222172 unplaced-scaffold na na JBPMMO010000032.1 = NZ_JBPMMO010000032.1 Primary Assembly 7077 na lcl_k127_62916 unplaced-scaffold na na JBPMMO010000033.1 = NZ_JBPMMO010000033.1 Primary Assembly 3717 na lcl_k127_109340 unplaced-scaffold na na JBPMMO010000034.1 = NZ_JBPMMO010000034.1 Primary Assembly 5408 na lcl_k127_197039 unplaced-scaffold na na JBPMMO010000035.1 = NZ_JBPMMO010000035.1 Primary Assembly 2260 na lcl_k127_233200 unplaced-scaffold na na JBPMMO010000036.1 = NZ_JBPMMO010000036.1 Primary Assembly 11178 na lcl_k127_326269 unplaced-scaffold na na JBPMMO010000037.1 = NZ_JBPMMO010000037.1 Primary Assembly 2078 na lcl_k127_140592 unplaced-scaffold na na JBPMMO010000038.1 = NZ_JBPMMO010000038.1 Primary Assembly 8330 na lcl_k127_89558 unplaced-scaffold na na JBPMMO010000039.1 = NZ_JBPMMO010000039.1 Primary Assembly 10173 na lcl_k127_245458 unplaced-scaffold na na JBPMMO010000040.1 = NZ_JBPMMO010000040.1 Primary Assembly 7672 na lcl_k127_75781 unplaced-scaffold na na JBPMMO010000041.1 = NZ_JBPMMO010000041.1 Primary Assembly 6216 na lcl_k127_1963 unplaced-scaffold na na JBPMMO010000042.1 = NZ_JBPMMO010000042.1 Primary Assembly 7082 na lcl_k127_216045 unplaced-scaffold na na JBPMMO010000043.1 = NZ_JBPMMO010000043.1 Primary Assembly 10323 na lcl_k127_306720 unplaced-scaffold na na JBPMMO010000044.1 = NZ_JBPMMO010000044.1 Primary Assembly 8767 na lcl_k127_161340 unplaced-scaffold na na JBPMMO010000045.1 = NZ_JBPMMO010000045.1 Primary Assembly 4243 na lcl_k127_391973 unplaced-scaffold na na JBPMMO010000046.1 = NZ_JBPMMO010000046.1 Primary Assembly 3384 na lcl_k127_108985 unplaced-scaffold na na JBPMMO010000047.1 = NZ_JBPMMO010000047.1 Primary Assembly 17060 na lcl_k127_167955 unplaced-scaffold na na JBPMMO010000048.1 = NZ_JBPMMO010000048.1 Primary Assembly 8240 na lcl_k127_32104 unplaced-scaffold na na JBPMMO010000049.1 = NZ_JBPMMO010000049.1 Primary Assembly 3753 na lcl_k127_285269 unplaced-scaffold na na JBPMMO010000050.1 = NZ_JBPMMO010000050.1 Primary Assembly 11363 na lcl_k127_295413 unplaced-scaffold na na JBPMMO010000051.1 = NZ_JBPMMO010000051.1 Primary Assembly 2684 na lcl_k127_193560 unplaced-scaffold na na JBPMMO010000052.1 = NZ_JBPMMO010000052.1 Primary Assembly 20286 na lcl_k127_227648 unplaced-scaffold na na JBPMMO010000053.1 = NZ_JBPMMO010000053.1 Primary Assembly 12821 na lcl_k127_352024 unplaced-scaffold na na JBPMMO010000054.1 = NZ_JBPMMO010000054.1 Primary Assembly 5232 na lcl_k127_246201 unplaced-scaffold na na JBPMMO010000055.1 = NZ_JBPMMO010000055.1 Primary Assembly 16005 na lcl_k127_189133 unplaced-scaffold na na JBPMMO010000056.1 = NZ_JBPMMO010000056.1 Primary Assembly 9334 na lcl_k127_281770 unplaced-scaffold na na JBPMMO010000057.1 = NZ_JBPMMO010000057.1 Primary Assembly 2441 na lcl_k127_229044 unplaced-scaffold na na JBPMMO010000058.1 = NZ_JBPMMO010000058.1 Primary Assembly 4254 na lcl_k127_81056 unplaced-scaffold na na JBPMMO010000059.1 = NZ_JBPMMO010000059.1 Primary Assembly 21714 na lcl_k127_297327 unplaced-scaffold na na JBPMMO010000060.1 = NZ_JBPMMO010000060.1 Primary Assembly 13848 na lcl_k127_164608 unplaced-scaffold na na JBPMMO010000061.1 = NZ_JBPMMO010000061.1 Primary Assembly 2472 na lcl_k127_81661 unplaced-scaffold na na JBPMMO010000062.1 = NZ_JBPMMO010000062.1 Primary Assembly 25063 na lcl_k127_268702 unplaced-scaffold na na JBPMMO010000063.1 = NZ_JBPMMO010000063.1 Primary Assembly 5753 na lcl_k127_216743 unplaced-scaffold na na JBPMMO010000064.1 = NZ_JBPMMO010000064.1 Primary Assembly 11654 na lcl_k127_38657 unplaced-scaffold na na JBPMMO010000065.1 = NZ_JBPMMO010000065.1 Primary Assembly 5363 na lcl_k127_325005 unplaced-scaffold na na JBPMMO010000066.1 = NZ_JBPMMO010000066.1 Primary Assembly 13742 na lcl_k127_54045 unplaced-scaffold na na JBPMMO010000067.1 = NZ_JBPMMO010000067.1 Primary Assembly 10456 na lcl_k127_217140 unplaced-scaffold na na JBPMMO010000068.1 = NZ_JBPMMO010000068.1 Primary Assembly 38501 na lcl_k127_187766 unplaced-scaffold na na JBPMMO010000069.1 = NZ_JBPMMO010000069.1 Primary Assembly 3867 na lcl_k127_381734 unplaced-scaffold na na JBPMMO010000070.1 = NZ_JBPMMO010000070.1 Primary Assembly 5606 na lcl_k127_250199 unplaced-scaffold na na JBPMMO010000071.1 = NZ_JBPMMO010000071.1 Primary Assembly 9448 na lcl_k127_161004 unplaced-scaffold na na JBPMMO010000072.1 = NZ_JBPMMO010000072.1 Primary Assembly 3668 na lcl_k127_33815 unplaced-scaffold na na JBPMMO010000073.1 = NZ_JBPMMO010000073.1 Primary Assembly 6066 na lcl_k127_108042 unplaced-scaffold na na JBPMMO010000074.1 = NZ_JBPMMO010000074.1 Primary Assembly 4979 na lcl_k127_252610 unplaced-scaffold na na JBPMMO010000075.1 = NZ_JBPMMO010000075.1 Primary Assembly 8789 na lcl_k127_218065 unplaced-scaffold na na JBPMMO010000076.1 = NZ_JBPMMO010000076.1 Primary Assembly 14264 na lcl_k127_187885 unplaced-scaffold na na JBPMMO010000077.1 = NZ_JBPMMO010000077.1 Primary Assembly 7718 na lcl_k127_221782 unplaced-scaffold na na JBPMMO010000078.1 = NZ_JBPMMO010000078.1 Primary Assembly 34754 na lcl_k127_277747 unplaced-scaffold na na JBPMMO010000079.1 = NZ_JBPMMO010000079.1 Primary Assembly 17544 na lcl_k127_215175 unplaced-scaffold na na JBPMMO010000080.1 = NZ_JBPMMO010000080.1 Primary Assembly 5187 na lcl_k127_267610 unplaced-scaffold na na JBPMMO010000081.1 = NZ_JBPMMO010000081.1 Primary Assembly 2933 na lcl_k127_890 unplaced-scaffold na na JBPMMO010000082.1 = NZ_JBPMMO010000082.1 Primary Assembly 3739 na lcl_k127_55455 unplaced-scaffold na na JBPMMO010000083.1 = NZ_JBPMMO010000083.1 Primary Assembly 18291 na lcl_k127_214872 unplaced-scaffold na na JBPMMO010000084.1 = NZ_JBPMMO010000084.1 Primary Assembly 2293 na lcl_k127_271171 unplaced-scaffold na na JBPMMO010000085.1 = NZ_JBPMMO010000085.1 Primary Assembly 4276 na lcl_k127_162331 unplaced-scaffold na na JBPMMO010000086.1 = NZ_JBPMMO010000086.1 Primary Assembly 2780 na lcl_k127_1581 unplaced-scaffold na na JBPMMO010000087.1 = NZ_JBPMMO010000087.1 Primary Assembly 2540 na lcl_k127_215848 unplaced-scaffold na na JBPMMO010000088.1 = NZ_JBPMMO010000088.1 Primary Assembly 3526 na lcl_k127_288 unplaced-scaffold na na JBPMMO010000089.1 = NZ_JBPMMO010000089.1 Primary Assembly 6344 na lcl_k127_355149 unplaced-scaffold na na JBPMMO010000090.1 = NZ_JBPMMO010000090.1 Primary Assembly 10010 na lcl_k127_162285 unplaced-scaffold na na JBPMMO010000091.1 = NZ_JBPMMO010000091.1 Primary Assembly 19301 na lcl_k127_38009 unplaced-scaffold na na JBPMMO010000092.1 = NZ_JBPMMO010000092.1 Primary Assembly 12678 na lcl_k127_299869 unplaced-scaffold na na JBPMMO010000093.1 = NZ_JBPMMO010000093.1 Primary Assembly 4232 na lcl_k127_139910 unplaced-scaffold na na JBPMMO010000094.1 = NZ_JBPMMO010000094.1 Primary Assembly 2033 na lcl_k127_327860 unplaced-scaffold na na JBPMMO010000095.1 = NZ_JBPMMO010000095.1 Primary Assembly 3592 na lcl_k127_14309 unplaced-scaffold na na JBPMMO010000096.1 = NZ_JBPMMO010000096.1 Primary Assembly 12466 na lcl_k127_274504 unplaced-scaffold na na JBPMMO010000097.1 = NZ_JBPMMO010000097.1 Primary Assembly 5353 na lcl_k127_295357 unplaced-scaffold na na JBPMMO010000098.1 = NZ_JBPMMO010000098.1 Primary Assembly 4668 na lcl_k127_170609 unplaced-scaffold na na JBPMMO010000099.1 = NZ_JBPMMO010000099.1 Primary Assembly 2700 na lcl_k127_116026 unplaced-scaffold na na JBPMMO010000100.1 = NZ_JBPMMO010000100.1 Primary Assembly 6204 na lcl_k127_247672 unplaced-scaffold na na JBPMMO010000101.1 = NZ_JBPMMO010000101.1 Primary Assembly 7575 na lcl_k127_147073 unplaced-scaffold na na JBPMMO010000102.1 = NZ_JBPMMO010000102.1 Primary Assembly 16528 na lcl_k127_274889 unplaced-scaffold na na JBPMMO010000103.1 = NZ_JBPMMO010000103.1 Primary Assembly 4859 na lcl_k127_88575 unplaced-scaffold na na JBPMMO010000104.1 = NZ_JBPMMO010000104.1 Primary Assembly 19746 na lcl_k127_119413 unplaced-scaffold na na JBPMMO010000105.1 = NZ_JBPMMO010000105.1 Primary Assembly 2034 na lcl_k127_167966 unplaced-scaffold na na JBPMMO010000106.1 = NZ_JBPMMO010000106.1 Primary Assembly 2356 na lcl_k127_303077 unplaced-scaffold na na JBPMMO010000107.1 = NZ_JBPMMO010000107.1 Primary Assembly 12249 na lcl_k127_63659 unplaced-scaffold na na JBPMMO010000108.1 = NZ_JBPMMO010000108.1 Primary Assembly 2373 na lcl_k127_27080 unplaced-scaffold na na JBPMMO010000109.1 = NZ_JBPMMO010000109.1 Primary Assembly 9229 na lcl_k127_277351 unplaced-scaffold na na JBPMMO010000110.1 = NZ_JBPMMO010000110.1 Primary Assembly 10815 na lcl_k127_88888 unplaced-scaffold na na JBPMMO010000111.1 = NZ_JBPMMO010000111.1 Primary Assembly 3707 na lcl_k127_280107 unplaced-scaffold na na JBPMMO010000112.1 = NZ_JBPMMO010000112.1 Primary Assembly 16190 na lcl_k127_168826 unplaced-scaffold na na JBPMMO010000113.1 = NZ_JBPMMO010000113.1 Primary Assembly 4141 na lcl_k127_1438 unplaced-scaffold na na JBPMMO010000114.1 = NZ_JBPMMO010000114.1 Primary Assembly 10020 na lcl_k127_35972 unplaced-scaffold na na JBPMMO010000115.1 = NZ_JBPMMO010000115.1 Primary Assembly 7029 na lcl_k127_63515 unplaced-scaffold na na JBPMMO010000116.1 = NZ_JBPMMO010000116.1 Primary Assembly 8636 na lcl_k127_359627 unplaced-scaffold na na JBPMMO010000117.1 = NZ_JBPMMO010000117.1 Primary Assembly 33132 na lcl_k127_223746 unplaced-scaffold na na JBPMMO010000118.1 = NZ_JBPMMO010000118.1 Primary Assembly 10369 na lcl_k127_334343 unplaced-scaffold na na JBPMMO010000119.1 = NZ_JBPMMO010000119.1 Primary Assembly 13544 na lcl_k127_250806 unplaced-scaffold na na JBPMMO010000120.1 = NZ_JBPMMO010000120.1 Primary Assembly 10214 na lcl_k127_355420 unplaced-scaffold na na JBPMMO010000121.1 = NZ_JBPMMO010000121.1 Primary Assembly 4885 na lcl_k127_11017 unplaced-scaffold na na JBPMMO010000122.1 = NZ_JBPMMO010000122.1 Primary Assembly 2161 na lcl_k127_251454 unplaced-scaffold na na JBPMMO010000123.1 = NZ_JBPMMO010000123.1 Primary Assembly 8883 na lcl_k127_121829 unplaced-scaffold na na JBPMMO010000124.1 = NZ_JBPMMO010000124.1 Primary Assembly 2618 na lcl_k127_333192 unplaced-scaffold na na JBPMMO010000125.1 = NZ_JBPMMO010000125.1 Primary Assembly 7708 na lcl_k127_246361 unplaced-scaffold na na JBPMMO010000126.1 = NZ_JBPMMO010000126.1 Primary Assembly 11493 na lcl_k127_305001 unplaced-scaffold na na JBPMMO010000127.1 = NZ_JBPMMO010000127.1 Primary Assembly 3972 na lcl_k127_16434 unplaced-scaffold na na JBPMMO010000128.1 = NZ_JBPMMO010000128.1 Primary Assembly 4853 na lcl_k127_29182 unplaced-scaffold na na JBPMMO010000129.1 = NZ_JBPMMO010000129.1 Primary Assembly 3580 na lcl_k127_305806 unplaced-scaffold na na JBPMMO010000130.1 = NZ_JBPMMO010000130.1 Primary Assembly 23723 na lcl_k127_386409 unplaced-scaffold na na JBPMMO010000131.1 = NZ_JBPMMO010000131.1 Primary Assembly 11673 na lcl_k127_216548 unplaced-scaffold na na JBPMMO010000132.1 = NZ_JBPMMO010000132.1 Primary Assembly 12515 na lcl_k127_38968 unplaced-scaffold na na JBPMMO010000133.1 = NZ_JBPMMO010000133.1 Primary Assembly 21648 na lcl_k127_66953 unplaced-scaffold na na JBPMMO010000134.1 = NZ_JBPMMO010000134.1 Primary Assembly 2151 na lcl_k127_107370 unplaced-scaffold na na JBPMMO010000135.1 = NZ_JBPMMO010000135.1 Primary Assembly 4461 na lcl_k127_66968 unplaced-scaffold na na JBPMMO010000136.1 = NZ_JBPMMO010000136.1 Primary Assembly 4640 na lcl_k127_138037 unplaced-scaffold na na JBPMMO010000137.1 = NZ_JBPMMO010000137.1 Primary Assembly 13878 na lcl_k127_328909 unplaced-scaffold na na JBPMMO010000138.1 = NZ_JBPMMO010000138.1 Primary Assembly 5294 na lcl_k127_336167 unplaced-scaffold na na JBPMMO010000139.1 = NZ_JBPMMO010000139.1 Primary Assembly 2568 na lcl_k127_321711 unplaced-scaffold na na JBPMMO010000140.1 = NZ_JBPMMO010000140.1 Primary Assembly 2081 na lcl_k127_228135 unplaced-scaffold na na JBPMMO010000141.1 = NZ_JBPMMO010000141.1 Primary Assembly 2087 na lcl_k127_228148 unplaced-scaffold na na JBPMMO010000142.1 = NZ_JBPMMO010000142.1 Primary Assembly 11501 na lcl_k127_301728 unplaced-scaffold na na JBPMMO010000143.1 = NZ_JBPMMO010000143.1 Primary Assembly 7871 na lcl_k127_201655 unplaced-scaffold na na JBPMMO010000144.1 = NZ_JBPMMO010000144.1 Primary Assembly 2245 na lcl_k127_353400 unplaced-scaffold na na JBPMMO010000145.1 = NZ_JBPMMO010000145.1 Primary Assembly 20200 na lcl_k127_308806 unplaced-scaffold na na JBPMMO010000146.1 = NZ_JBPMMO010000146.1 Primary Assembly 2333 na lcl_k127_284377 unplaced-scaffold na na JBPMMO010000147.1 = NZ_JBPMMO010000147.1 Primary Assembly 2286 na