The repeat files provided for this assembly were generated using RepeatMasker.
  Smit, AFA, Hubley, R & Green, P.,
  RepeatMasker version 4.2.4
  1996-2026 <http://www.repeatmasker.org>.

VERSION:
RepeatMasker version 4.2.4
Search Engine: NCBI/RMBLAST [ 2.17.1+ ]

Using FamDB: /hive/data/outside/FamDB-3.0.0
  Title    : Dfam
  Version  : 4.0
  Date     : 2026-05-22
  Families : 7,627,752

Species/Taxa Search:
  Drosophila navojoa [NCBI Taxonomy ID: 7232]
  Lineage: root;cellular organisms;Eukaryota;Opisthokonta;Metazoa;
           Eumetazoa;Bilateria;Protostomia;Ecdysozoa;Panarthropoda;
           Arthropoda;Mandibulata;Pancrustacea;Hexapoda;Insecta;
           Dicondylia;Pterygota <insects>;Neoptera;Endopterygota;
           Diptera;Brachycera;Muscomorpha;Eremoneura;Cyclorrhapha;
           Schizophora;Acalyptratae;Ephydroidea;Drosophilidae;
           Drosophilinae;Drosophilini;Drosophila <flies,genus>;
           Drosophila <flies,subgenus>;repleta group;mulleri subgroup
Including curated and uncurated families:
  23/23 families in ancestor taxa; 226/226 lineage-specific families

Building species libraries in: /hive/data/outside/RepeatMasker/RepeatMasker-4.2.4/Libraries/CONS-Dfam_4.0/drosophila_navojoa_wunc
RepeatMasker version 4.2.4
# FamDB version 3.0.0 June 2026
# RepeatMasker engine: -uncurated -engine rmblast -pa 1
# RepeatMasker library options: -species 'Drosophila navojoa'

PARAMETERS:
/hive/data/outside/RepeatMasker/RepeatMasker-4.2.4/RepeatMasker -uncurated -engine rmblast -pa 1 -align -species 'Drosophila navojoa'