# Assembly name: UAZ_NAV_1.0 # Organism name: Drosophila navojoa (flies) # Isolate: 15081-1374.11 # Sex: mixed # Taxid: 7232 # BioSample: SAMN30954108 # BioProject: PRJNA882913 # Submitter: University of Arizona # Date: 2025-12-23 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBPJWE01 # Assembly method: Canu v. 1.7.1; DBG2OLC v. 1.0; Pilon v. 1.22; Quickmerge v. 1.0 # Expected final version: Yes # Genome coverage: 60.0x # Sequencing technology: PacBio Sequel; Illumina HiSeq # RefSeq category: Reference Genome # GenBank assembly accession: GCA_054131105.1 # RefSeq assembly accession: GCF_054131105.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name NAV_E assembled-molecule 2 Chromosome CM134487.1 = NC_142890.1 Primary Assembly 33531625 na NAV_B assembled-molecule 3 Chromosome CM134488.1 = NC_142891.1 Primary Assembly 31266406 na NAV_D assembled-molecule 4 Chromosome CM134489.1 = NC_142892.1 Primary Assembly 27065188 na NAV_C assembled-molecule 5 Chromosome CM134490.1 = NC_142893.1 Primary Assembly 27046427 na NAV_F assembled-molecule 6 Chromosome CM134491.1 = NC_142894.1 Primary Assembly 1644375 na NAV_A assembled-molecule X Chromosome CM134492.1 = NC_142895.1 Primary Assembly 33787291 na NAV_Backbone_74 unplaced-scaffold na na JBPJWE010000007.1 = NW_028301739.1 Primary Assembly 44945 na NAV_Backbone_79 unplaced-scaffold na na JBPJWE010000008.1 = NW_028301740.1 Primary Assembly 79384 na NAV_Backbone_89 unplaced-scaffold na na JBPJWE010000009.1 = NW_028301741.1 Primary Assembly 82009 na NAV_Backbone_111 unplaced-scaffold na na JBPJWE010000010.1 = NW_028301742.1 Primary Assembly 47556 na NAV_Backbone_120 unplaced-scaffold na na JBPJWE010000011.1 = NW_028301743.1 Primary Assembly 27004 na NAV_Backbone_121 unplaced-scaffold na na JBPJWE010000012.1 = NW_028301744.1 Primary Assembly 59244 na NAV_Backbone_122 unplaced-scaffold na na JBPJWE010000013.1 = NW_028301745.1 Primary Assembly 28094 na NAV_Backbone_126 unplaced-scaffold na na JBPJWE010000014.1 = NW_028301746.1 Primary Assembly 56412 na NAV_Backbone_137 unplaced-scaffold na na JBPJWE010000015.1 = NW_028301747.1 Primary Assembly 26707 na NAV_Backbone_148 unplaced-scaffold na na JBPJWE010000016.1 = NW_028301748.1 Primary Assembly 46233 na NAV_Backbone_155 unplaced-scaffold na na JBPJWE010000017.1 = NW_028301749.1 Primary Assembly 34017 na NAV_Backbone_163 unplaced-scaffold na na JBPJWE010000018.1 = NW_028301750.1 Primary Assembly 28847 na NAV_Backbone_100 unplaced-scaffold na na JBPJWE010000019.1 = NW_028301751.1 Primary Assembly 34521 na NAV_Backbone_103 unplaced-scaffold na na JBPJWE010000020.1 = NW_028301752.1 Primary Assembly 59374 na NAV_Backbone_105 unplaced-scaffold na na JBPJWE010000021.1 = NW_028301753.1 Primary Assembly 30863 na NAV_Backbone_106 unplaced-scaffold na na JBPJWE010000022.1 = NW_028301754.1 Primary Assembly 26541 na NAV_Backbone_108 unplaced-scaffold na na JBPJWE010000023.1 = NW_028301755.1 Primary Assembly 37588 na NAV_Backbone_110 unplaced-scaffold na na JBPJWE010000024.1 = NW_028301756.1 Primary Assembly 41031 na NAV_Backbone_113 unplaced-scaffold na na JBPJWE010000025.1 = NW_028301757.1 Primary Assembly 27072 na NAV_Backbone_115 unplaced-scaffold na na JBPJWE010000026.1 = NW_028301758.1 Primary Assembly 32947 na NAV_Backbone_117 unplaced-scaffold na na JBPJWE010000027.1 = NW_028301759.1 Primary Assembly 89153 na NAV_Backbone_118 unplaced-scaffold na na JBPJWE010000028.1 = NW_028301760.1 Primary Assembly 54800 na NAV_Backbone_119 unplaced-scaffold na na JBPJWE010000029.1 = NW_028301761.1 Primary Assembly 44827 na NAV_Backbone_128 unplaced-scaffold na na JBPJWE010000030.1 = NW_028301762.1 Primary Assembly 27661 na NAV_Backbone_131 unplaced-scaffold na na JBPJWE010000031.1 = NW_028301763.1 Primary Assembly 56083 na NAV_Backbone_132 unplaced-scaffold na na JBPJWE010000032.1 = NW_028301764.1 Primary Assembly 45221 na NAV_Backbone_134 unplaced-scaffold na na JBPJWE010000033.1 = NW_028301765.1 Primary Assembly 22076 na NAV_Backbone_138 unplaced-scaffold na na JBPJWE010000034.1 = NW_028301766.1 Primary Assembly 30931 na NAV_Backbone_142 unplaced-scaffold na na JBPJWE010000035.1 = NW_028301767.1 Primary Assembly 67108 na NAV_Backbone_151 unplaced-scaffold na na JBPJWE010000036.1 = NW_028301768.1 Primary Assembly 16284 na NAV_Backbone_152 unplaced-scaffold na na JBPJWE010000037.1 = NW_028301769.1 Primary Assembly 30554 na NAV_Backbone_154 unplaced-scaffold na na JBPJWE010000038.1 = NW_028301770.1 Primary Assembly 34018 na NAV_Backbone_160 unplaced-scaffold na na JBPJWE010000039.1 = NW_028301771.1 Primary Assembly 46570 na NAV_Backbone_161 unplaced-scaffold na na JBPJWE010000040.1 = NW_028301772.1 Primary Assembly 23526 na NAV_Backbone_165 unplaced-scaffold na na JBPJWE010000041.1 = NW_028301773.1 Primary Assembly 32212 na NAV_Backbone_169 unplaced-scaffold na na JBPJWE010000042.1 = NW_028301774.1 Primary Assembly 39013 na NAV_Backbone_173 unplaced-scaffold na na JBPJWE010000043.1 = NW_028301775.1 Primary Assembly 20662 na NAV_Backbone_177 unplaced-scaffold na na JBPJWE010000044.1 = NW_028301776.1 Primary Assembly 19550 na NAV_Backbone_186 unplaced-scaffold na na JBPJWE010000045.1 = NW_028301777.1 Primary Assembly 9399 na NAV_Backbone_181 unplaced-scaffold na na JBPJWE010000046.1 = NW_028301778.1 Primary Assembly 27644 na NAV_Backbone_190 unplaced-scaffold na na JBPJWE010000047.1 = NW_028301779.1 Primary Assembly 36745 na NAV_Backbone_199 unplaced-scaffold na na JBPJWE010000048.1 = NW_028301780.1 Primary Assembly 4057 na NAV_Backbone_198 unplaced-scaffold na na JBPJWE010000049.1 = NW_028301781.1 Primary Assembly 54054 na NAV_Backbone_204 unplaced-scaffold na na JBPJWE010000050.1 = NW_028301782.1 Primary Assembly 41597 na NAV_Backbone_207 unplaced-scaffold na na JBPJWE010000051.1 = NW_028301783.1 Primary Assembly 6626 na NAV_Backbone_205 unplaced-scaffold na na JBPJWE010000052.1 = NW_028301784.1 Primary Assembly 35476 na NAV_Backbone_206 unplaced-scaffold na na JBPJWE010000053.1 = NW_028301785.1 Primary Assembly 29575 na NAV_Backbone_209 unplaced-scaffold na na JBPJWE010000054.1 = NW_028301786.1 Primary Assembly 19209 na NAV_Backbone_211 unplaced-scaffold na na JBPJWE010000055.1 = NW_028301787.1 Primary Assembly 47648 na NAV_Backbone_216 unplaced-scaffold na na JBPJWE010000056.1 = NW_028301788.1 Primary Assembly 26829 na NAV_Backbone_217 unplaced-scaffold na na JBPJWE010000057.1 = NW_028301789.1 Primary Assembly 27113 na NAV_Backbone_219 unplaced-scaffold na na JBPJWE010000058.1 = NW_028301790.1 Primary Assembly 22187 na NAV_Backbone_225 unplaced-scaffold na na JBPJWE010000059.1 = NW_028301791.1 Primary Assembly 10536 na NAV_Backbone_33 unplaced-scaffold na na JBPJWE010000060.1 = NW_028301792.1 Primary Assembly 31161 na NAV_Backbone_37 unplaced-scaffold na na JBPJWE010000061.1 = NW_028301793.1 Primary Assembly 57833 na NAV_Backbone_39 unplaced-scaffold na na JBPJWE010000062.1 = NW_028301794.1 Primary Assembly 33478 na NAV_Backbone_59 unplaced-scaffold na na JBPJWE010000063.1 = NW_028301795.1 Primary Assembly 39666 na NAV_Backbone_68 unplaced-scaffold na na JBPJWE010000064.1 = NW_028301796.1 Primary Assembly 40545 na NAV_Backbone_87 unplaced-scaffold na na JBPJWE010000065.1 = NW_028301797.1 Primary Assembly 41463 na NAV_Backbone_90 unplaced-scaffold na na JBPJWE010000066.1 = NW_028301798.1 Primary Assembly 37766 na NAV_Backbone_95 unplaced-scaffold na na JBPJWE010000067.1 = NW_028301799.1 Primary Assembly 86786 na NAV_Backbone_98 unplaced-scaffold na na JBPJWE010000068.1 = NW_028301800.1 Primary Assembly 38598 na NAV_mt assembled-molecule MT Mitochondrion CM134493.1 <> na non-nuclear 16020 na