hub GCF_900089455.2 genome assembly shortLabel Orrella dioscoreae (Orrdi1 2017) longLabel Orrella dioscoreae (Orrdi1 2017)/Orrella dioscoreae/GCF_900089455.2_OrrDiv2 genome assembly useOneFile on email genome-www@soe.ucsc.edu descriptionUrl html/GCF_900089455.2_OrrDiv2.description.html genome GCF_900089455.2 taxId 1851544 groups groups.txt description Orrella dioscoreae (Orrdi1 2017) twoBitPath GCF_900089455.2.2bit twoBitBptUrl GCF_900089455.2.2bit.bpt chromSizes GCF_900089455.2.chrom.sizes.txt chromAliasBb GCF_900089455.2.chromAlias.bb organism OrrDiv2 Oct. 2017 defaultPos NZ_LT907988.1:1616033-1626033 scientificName Orrella dioscoreae htmlPath html/GCF_900089455.2_OrrDiv2.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/900/089/455/GCF_900089455.2 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/900/089/455/GCF_900089455.2 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/900/089/455/GCF_900089455.2 track assembly longLabel Assembly shortLabel Assembly visibility hide colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCF_900089455.2_OrrDiv2.assembly.bb type bigBed 6 html html/GCF_900089455.2_OrrDiv2.assembly searchIndex name searchTrix ixIxx/GCF_900089455.2_OrrDiv2.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCF_900089455.2_OrrDiv2.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility dense autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCF_900089455.2_OrrDiv2.gc5Base.bw html html/GCF_900089455.2_OrrDiv2.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCF_900089455.2_OrrDiv2.tanDups track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCF_900089455.2_OrrDiv2.tandemDups.bb type bigBed 12 track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCF_900089455.2_OrrDiv2.simpleRepeat.bb html html/GCF_900089455.2_OrrDiv2.simpleRepeat track ncbiGene longLabel NCBI gene predictions shortLabel NCBI Genes visibility pack color 0,80,150 altColor 150,80,0 colorByStrand 0,80,150 150,80,0 bigDataUrl bbi/GCF_900089455.2_OrrDiv2.ncbiGene.bb type bigGenePred urls name2="https://www.ncbi.nlm.nih.gov/gene/?term=$$" geneName="https://www.ncbi.nlm.nih.gov/gene/$$" geneName2="https://www.ncbi.nlm.nih.gov/nuccore/$$" html html/GCF_900089455.2_OrrDiv2.ncbiGene searchIndex name searchTrix ixIxx/GCF_900089455.2_OrrDiv2.ncbiGene.ix urlLabel Entrez gene: labelFields name,geneName,geneName2 defaultLabelFields geneName2 group genes track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility dense type bigBed 4 + html html/GCF_900089455.2_OrrDiv2.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCF_900089455.2_OrrDiv2.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCF_900089455.2_OrrDiv2.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCF_900089455.2_OrrDiv2.windowMasker.bb html html/GCF_900089455.2_OrrDiv2.windowMasker