# Assembly name: IMG-taxon 2675903041 annotated assembly # Organism name: Nitrosomonas halophila (b-proteobacteria) # Infraspecific name: strain=Nm1 # Taxid: 44576 # BioSample: SAMN05421881 # BioProject: PRJEB16612 # Submitter: DOE - JOINT GENOME INSTITUTE # Date: 2016-10-22 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: FNOY01 # Assembly method: spades v. 3.6.2 # Genome coverage: 477x # Sequencing technology: Illumina HiSeq 2500-1TB # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_900107165.1 # RefSeq assembly accession: GCF_900107165.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_900107164.1 GCF_900107164.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name FNOY01000001.1 unplaced-scaffold na na FNOY01000001.1 = NZ_FNOY01000001.1 Primary Assembly 116980 na FNOY01000002.1 unplaced-scaffold na na FNOY01000002.1 = NZ_FNOY01000002.1 Primary Assembly 108856 na FNOY01000003.1 unplaced-scaffold na na FNOY01000003.1 = NZ_FNOY01000003.1 Primary Assembly 107004 na FNOY01000004.1 unplaced-scaffold na na FNOY01000004.1 = NZ_FNOY01000004.1 Primary Assembly 94717 na FNOY01000005.1 unplaced-scaffold na na FNOY01000005.1 = NZ_FNOY01000005.1 Primary Assembly 93168 na FNOY01000006.1 unplaced-scaffold na na FNOY01000006.1 = NZ_FNOY01000006.1 Primary Assembly 92457 na FNOY01000007.1 unplaced-scaffold na na FNOY01000007.1 = NZ_FNOY01000007.1 Primary Assembly 91184 na FNOY01000008.1 unplaced-scaffold na na FNOY01000008.1 = NZ_FNOY01000008.1 Primary Assembly 80127 na FNOY01000009.1 unplaced-scaffold na na FNOY01000009.1 = NZ_FNOY01000009.1 Primary Assembly 72315 na FNOY01000010.1 unplaced-scaffold na na FNOY01000010.1 = NZ_FNOY01000010.1 Primary Assembly 66605 na FNOY01000011.1 unplaced-scaffold na na FNOY01000011.1 = NZ_FNOY01000011.1 Primary Assembly 65518 na FNOY01000012.1 unplaced-scaffold na na FNOY01000012.1 = NZ_FNOY01000012.1 Primary Assembly 64409 na FNOY01000013.1 unplaced-scaffold na na FNOY01000013.1 = NZ_FNOY01000013.1 Primary Assembly 62987 na FNOY01000014.1 unplaced-scaffold na na FNOY01000014.1 = NZ_FNOY01000014.1 Primary Assembly 60142 na FNOY01000015.1 unplaced-scaffold na na FNOY01000015.1 = NZ_FNOY01000015.1 Primary Assembly 55358 na FNOY01000016.1 unplaced-scaffold na na FNOY01000016.1 = NZ_FNOY01000016.1 Primary Assembly 53586 na FNOY01000017.1 unplaced-scaffold na na FNOY01000017.1 = NZ_FNOY01000017.1 Primary Assembly 52067 na FNOY01000018.1 unplaced-scaffold na na FNOY01000018.1 = NZ_FNOY01000018.1 Primary Assembly 51609 na FNOY01000019.1 unplaced-scaffold na na FNOY01000019.1 = NZ_FNOY01000019.1 Primary Assembly 50896 na FNOY01000020.1 unplaced-scaffold na na FNOY01000020.1 = NZ_FNOY01000020.1 Primary Assembly 49820 na FNOY01000021.1 unplaced-scaffold na na FNOY01000021.1 = NZ_FNOY01000021.1 Primary Assembly 45153 na FNOY01000022.1 unplaced-scaffold na na FNOY01000022.1 = NZ_FNOY01000022.1 Primary Assembly 43294 na FNOY01000023.1 unplaced-scaffold na na FNOY01000023.1 = NZ_FNOY01000023.1 Primary Assembly 39550 na FNOY01000024.1 unplaced-scaffold na na FNOY01000024.1 = NZ_FNOY01000024.1 Primary Assembly 38503 na FNOY01000025.1 unplaced-scaffold na na FNOY01000025.1 = NZ_FNOY01000025.1 Primary Assembly 35963 na FNOY01000026.1 unplaced-scaffold na na FNOY01000026.1 = NZ_FNOY01000026.1 Primary Assembly 35097 na FNOY01000027.1 unplaced-scaffold na na FNOY01000027.1 = NZ_FNOY01000027.1 Primary Assembly 34260 na FNOY01000028.1 unplaced-scaffold na na FNOY01000028.1 = NZ_FNOY01000028.1 Primary Assembly 34089 na FNOY01000029.1 unplaced-scaffold na na FNOY01000029.1 = NZ_FNOY01000029.1 Primary Assembly 33468 na FNOY01000030.1 unplaced-scaffold na na FNOY01000030.1 = NZ_FNOY01000030.1 Primary Assembly 33107 na FNOY01000031.1 unplaced-scaffold na na FNOY01000031.1 = NZ_FNOY01000031.1 Primary Assembly 31066 na FNOY01000032.1 unplaced-scaffold na na FNOY01000032.1 = NZ_FNOY01000032.1 Primary Assembly 31027 na FNOY01000033.1 unplaced-scaffold na na FNOY01000033.1 = NZ_FNOY01000033.1 Primary Assembly 30514 na FNOY01000034.1 unplaced-scaffold na na FNOY01000034.1 = NZ_FNOY01000034.1 Primary Assembly 30088 na FNOY01000035.1 unplaced-scaffold na na FNOY01000035.1 = NZ_FNOY01000035.1 Primary Assembly 29754 na FNOY01000036.1 unplaced-scaffold na na FNOY01000036.1 = NZ_FNOY01000036.1 Primary Assembly 29633 na FNOY01000037.1 unplaced-scaffold na na FNOY01000037.1 = NZ_FNOY01000037.1 Primary Assembly 28093 na FNOY01000038.1 unplaced-scaffold na na FNOY01000038.1 = NZ_FNOY01000038.1 Primary Assembly 27420 na FNOY01000039.1 unplaced-scaffold na na FNOY01000039.1 = NZ_FNOY01000039.1 Primary Assembly 26630 na FNOY01000040.1 unplaced-scaffold na na FNOY01000040.1 = NZ_FNOY01000040.1 Primary Assembly 26602 na FNOY01000041.1 unplaced-scaffold na na FNOY01000041.1 = NZ_FNOY01000041.1 Primary Assembly 26192 na FNOY01000042.1 unplaced-scaffold na na FNOY01000042.1 = NZ_FNOY01000042.1 Primary Assembly 26058 na FNOY01000043.1 unplaced-scaffold na na FNOY01000043.1 = NZ_FNOY01000043.1 Primary Assembly 25908 na FNOY01000044.1 unplaced-scaffold na na FNOY01000044.1 = NZ_FNOY01000044.1 Primary Assembly 24147 na FNOY01000045.1 unplaced-scaffold na na FNOY01000045.1 = NZ_FNOY01000045.1 Primary Assembly 23362 na FNOY01000046.1 unplaced-scaffold na na FNOY01000046.1 = NZ_FNOY01000046.1 Primary Assembly 23052 na FNOY01000047.1 unplaced-scaffold na na FNOY01000047.1 = NZ_FNOY01000047.1 Primary Assembly 23028 na FNOY01000048.1 unplaced-scaffold na na FNOY01000048.1 = NZ_FNOY01000048.1 Primary Assembly 21497 na FNOY01000049.1 unplaced-scaffold na na FNOY01000049.1 = NZ_FNOY01000049.1 Primary Assembly 21446 na FNOY01000050.1 unplaced-scaffold na na FNOY01000050.1 = NZ_FNOY01000050.1 Primary Assembly 21136 na FNOY01000051.1 unplaced-scaffold na na FNOY01000051.1 = NZ_FNOY01000051.1 Primary Assembly 20746 na FNOY01000052.1 unplaced-scaffold na na FNOY01000052.1 = NZ_FNOY01000052.1 Primary Assembly 20380 na FNOY01000053.1 unplaced-scaffold na na FNOY01000053.1 = NZ_FNOY01000053.1 Primary Assembly 20198 na FNOY01000054.1 unplaced-scaffold na na FNOY01000054.1 = NZ_FNOY01000054.1 Primary Assembly 19928 na FNOY01000055.1 unplaced-scaffold na na FNOY01000055.1 = NZ_FNOY01000055.1 Primary Assembly 19906 na FNOY01000056.1 unplaced-scaffold na na FNOY01000056.1 = NZ_FNOY01000056.1 Primary Assembly 19764 na FNOY01000057.1 unplaced-scaffold na na FNOY01000057.1 = NZ_FNOY01000057.1 Primary Assembly 19427 na FNOY01000058.1 unplaced-scaffold na na FNOY01000058.1 = NZ_FNOY01000058.1 Primary Assembly 19169 na FNOY01000059.1 unplaced-scaffold na na FNOY01000059.1 = NZ_FNOY01000059.1 Primary Assembly 19072 na FNOY01000060.1 unplaced-scaffold na na FNOY01000060.1 = NZ_FNOY01000060.1 Primary Assembly 18765 na FNOY01000061.1 unplaced-scaffold na na FNOY01000061.1 = NZ_FNOY01000061.1 Primary Assembly 18654 na FNOY01000062.1 unplaced-scaffold na na FNOY01000062.1 = NZ_FNOY01000062.1 Primary Assembly 18500 na FNOY01000063.1 unplaced-scaffold na na FNOY01000063.1 = NZ_FNOY01000063.1 Primary Assembly 17892 na FNOY01000064.1 unplaced-scaffold na na FNOY01000064.1 = NZ_FNOY01000064.1 Primary Assembly 16753 na FNOY01000065.1 unplaced-scaffold na na FNOY01000065.1 = NZ_FNOY01000065.1 Primary Assembly 16267 na FNOY01000066.1 unplaced-scaffold na na FNOY01000066.1 = NZ_FNOY01000066.1 Primary Assembly 15341 na FNOY01000067.1 unplaced-scaffold na na FNOY01000067.1 = NZ_FNOY01000067.1 Primary Assembly 15182 na FNOY01000068.1 unplaced-scaffold na na FNOY01000068.1 = NZ_FNOY01000068.1 Primary Assembly 13962 na FNOY01000069.1 unplaced-scaffold na na FNOY01000069.1 = NZ_FNOY01000069.1 Primary Assembly 13916 na FNOY01000070.1 unplaced-scaffold na na FNOY01000070.1 = NZ_FNOY01000070.1 Primary Assembly 13800 na FNOY01000071.1 unplaced-scaffold na na FNOY01000071.1 = NZ_FNOY01000071.1 Primary Assembly 13415 na FNOY01000072.1 unplaced-scaffold na na FNOY01000072.1 = NZ_FNOY01000072.1 Primary Assembly 12983 na FNOY01000073.1 unplaced-scaffold na na FNOY01000073.1 = NZ_FNOY01000073.1 Primary Assembly 12920 na FNOY01000074.1 unplaced-scaffold na na FNOY01000074.1 = NZ_FNOY01000074.1 Primary Assembly 12740 na FNOY01000075.1 unplaced-scaffold na na FNOY01000075.1 = NZ_FNOY01000075.1 Primary Assembly 12715 na FNOY01000076.1 unplaced-scaffold na na FNOY01000076.1 = NZ_FNOY01000076.1 Primary Assembly 12392 na FNOY01000077.1 unplaced-scaffold na na FNOY01000077.1 = NZ_FNOY01000077.1 Primary Assembly 11669 na FNOY01000078.1 unplaced-scaffold na na FNOY01000078.1 = NZ_FNOY01000078.1 Primary Assembly 11346 na FNOY01000079.1 unplaced-scaffold na na FNOY01000079.1 = NZ_FNOY01000079.1 Primary Assembly 11079 na FNOY01000080.1 unplaced-scaffold na na FNOY01000080.1 = NZ_FNOY01000080.1 Primary Assembly 10795 na FNOY01000081.1 unplaced-scaffold na na FNOY01000081.1 = NZ_FNOY01000081.1 Primary Assembly 10549 na FNOY01000082.1 unplaced-scaffold na na FNOY01000082.1 = NZ_FNOY01000082.1 Primary Assembly 10309 na FNOY01000083.1 unplaced-scaffold na na FNOY01000083.1 = NZ_FNOY01000083.1 Primary Assembly 10184 na FNOY01000084.1 unplaced-scaffold na na FNOY01000084.1 = NZ_FNOY01000084.1 Primary Assembly 10096 na FNOY01000085.1 unplaced-scaffold na na FNOY01000085.1 = NZ_FNOY01000085.1 Primary Assembly 10060 na FNOY01000086.1 unplaced-scaffold na na FNOY01000086.1 = NZ_FNOY01000086.1 Primary Assembly 10014 na FNOY01000087.1 unplaced-scaffold na na FNOY01000087.1 = NZ_FNOY01000087.1 Primary Assembly 9780 na FNOY01000088.1 unplaced-scaffold na na FNOY01000088.1 = NZ_FNOY01000088.1 Primary Assembly 9325 na FNOY01000089.1 unplaced-scaffold na na FNOY01000089.1 = NZ_FNOY01000089.1 Primary Assembly 9109 na FNOY01000090.1 unplaced-scaffold na na FNOY01000090.1 = NZ_FNOY01000090.1 Primary Assembly 8841 na FNOY01000091.1 unplaced-scaffold na na FNOY01000091.1 = NZ_FNOY01000091.1 Primary Assembly 8792 na FNOY01000092.1 unplaced-scaffold na na FNOY01000092.1 = NZ_FNOY01000092.1 Primary Assembly 8772 na FNOY01000093.1 unplaced-scaffold na na FNOY01000093.1 = NZ_FNOY01000093.1 Primary Assembly 8328 na FNOY01000094.1 unplaced-scaffold na na FNOY01000094.1 = NZ_FNOY01000094.1 Primary Assembly 8144 na FNOY01000095.1 unplaced-scaffold na na FNOY01000095.1 = NZ_FNOY01000095.1 Primary Assembly 7851 na FNOY01000096.1 unplaced-scaffold na na FNOY01000096.1 = NZ_FNOY01000096.1 Primary Assembly 7726 na FNOY01000097.1 unplaced-scaffold na na FNOY01000097.1 = NZ_FNOY01000097.1 Primary Assembly 7517 na FNOY01000098.1 unplaced-scaffold na na FNOY01000098.1 = NZ_FNOY01000098.1 Primary Assembly 7315 na FNOY01000099.1 unplaced-scaffold na na FNOY01000099.1 = NZ_FNOY01000099.1 Primary Assembly 7216 na FNOY01000100.1 unplaced-scaffold na na FNOY01000100.1 = NZ_FNOY01000100.1 Primary Assembly 7118 na FNOY01000101.1 unplaced-scaffold na na FNOY01000101.1 = NZ_FNOY01000101.1 Primary Assembly 6217 na FNOY01000102.1 unplaced-scaffold na na FNOY01000102.1 = NZ_FNOY01000102.1 Primary Assembly 6019 na FNOY01000103.1 unplaced-scaffold na na FNOY01000103.1 = NZ_FNOY01000103.1 Primary Assembly 6012 na FNOY01000104.1 unplaced-scaffold na na FNOY01000104.1 = NZ_FNOY01000104.1 Primary Assembly 5942 na FNOY01000105.1 unplaced-scaffold na na FNOY01000105.1 = NZ_FNOY01000105.1 Primary Assembly 5587 na FNOY01000106.1 unplaced-scaffold na na FNOY01000106.1 = NZ_FNOY01000106.1 Primary Assembly 5478 na FNOY01000107.1 unplaced-scaffold na na FNOY01000107.1 = NZ_FNOY01000107.1 Primary Assembly 5242 na FNOY01000108.1 unplaced-scaffold na na FNOY01000108.1 = NZ_FNOY01000108.1 Primary Assembly 5146 na FNOY01000109.1 unplaced-scaffold na na FNOY01000109.1 = NZ_FNOY01000109.1 Primary Assembly 5072 na FNOY01000110.1 unplaced-scaffold na na FNOY01000110.1 = NZ_FNOY01000110.1 Primary Assembly 5005 na FNOY01000111.1 unplaced-scaffold na na FNOY01000111.1 = NZ_FNOY01000111.1 Primary Assembly 4878 na FNOY01000112.1 unplaced-scaffold na na FNOY01000112.1 = NZ_FNOY01000112.1 Primary Assembly 4854 na FNOY01000113.1 unplaced-scaffold na na FNOY01000113.1 = NZ_FNOY01000113.1 Primary Assembly 4583 na FNOY01000114.1 unplaced-scaffold na na FNOY01000114.1 = NZ_FNOY01000114.1 Primary Assembly 4438 na FNOY01000115.1 unplaced-scaffold na na FNOY01000115.1 = NZ_FNOY01000115.1 Primary Assembly 4388 na FNOY01000116.1 unplaced-scaffold na na FNOY01000116.1 = NZ_FNOY01000116.1 Primary Assembly 4134 na FNOY01000117.1 unplaced-scaffold na na FNOY01000117.1 = NZ_FNOY01000117.1 Primary Assembly 3858 na FNOY01000118.1 unplaced-scaffold na na FNOY01000118.1 = NZ_FNOY01000118.1 Primary Assembly 3709 na FNOY01000119.1 unplaced-scaffold na na FNOY01000119.1 = NZ_FNOY01000119.1 Primary Assembly 3703 na FNOY01000120.1 unplaced-scaffold na na FNOY01000120.1 = NZ_FNOY01000120.1 Primary Assembly 3624 na FNOY01000121.1 unplaced-scaffold na na FNOY01000121.1 = NZ_FNOY01000121.1 Primary Assembly 3620 na FNOY01000122.1 unplaced-scaffold na na FNOY01000122.1 = NZ_FNOY01000122.1 Primary Assembly 3442 na FNOY01000123.1 unplaced-scaffold na na FNOY01000123.1 = NZ_FNOY01000123.1 Primary Assembly 3298 na FNOY01000124.1 unplaced-scaffold na na FNOY01000124.1 = NZ_FNOY01000124.1 Primary Assembly 3208 na FNOY01000125.1 unplaced-scaffold na na FNOY01000125.1 = NZ_FNOY01000125.1 Primary Assembly 3019 na FNOY01000126.1 unplaced-scaffold na na FNOY01000126.1 = NZ_FNOY01000126.1 Primary Assembly 2923 na FNOY01000127.1 unplaced-scaffold na na FNOY01000127.1 = NZ_FNOY01000127.1 Primary Assembly 2669 na FNOY01000128.1 unplaced-scaffold na na FNOY01000128.1 = NZ_FNOY01000128.1 Primary Assembly 2592 na FNOY01000129.1 unplaced-scaffold na na FNOY01000129.1 = NZ_FNOY01000129.1 Primary Assembly 2518 na FNOY01000130.1 unplaced-scaffold na na FNOY01000130.1 = NZ_FNOY01000130.1 Primary Assembly 2334 na FNOY01000131.1 unplaced-scaffold na na FNOY01000131.1 = NZ_FNOY01000131.1 Primary Assembly 2334 na FNOY01000132.1 unplaced-scaffold na na FNOY01000132.1 = NZ_FNOY01000132.1 Primary Assembly 2183 na FNOY01000133.1 unplaced-scaffold na na FNOY01000133.1 = NZ_FNOY01000133.1 Primary Assembly 2086 na FNOY01000134.1 unplaced-scaffold na na FNOY01000134.1 = NZ_FNOY01000134.1 Primary Assembly 2004 na FNOY01000135.1 unplaced-scaffold na na FNOY01000135.1 = NZ_FNOY01000135.1 Primary Assembly 1885 na FNOY01000136.1 unplaced-scaffold na na FNOY01000136.1 = NZ_FNOY01000136.1 Primary Assembly 1799 na FNOY01000137.1 unplaced-scaffold na na FNOY01000137.1 = NZ_FNOY01000137.1 Primary Assembly 1727 na FNOY01000138.1 unplaced-scaffold na na FNOY01000138.1 = NZ_FNOY01000138.1 Primary Assembly 1704 na FNOY01000139.1 unplaced-scaffold na na FNOY01000139.1 = NZ_FNOY01000139.1 Primary Assembly 1646 na FNOY01000140.1 unplaced-scaffold na na FNOY01000140.1 = NZ_FNOY01000140.1 Primary Assembly 1607 na FNOY01000141.1 unplaced-scaffold na na FNOY01000141.1 = NZ_FNOY01000141.1 Primary Assembly 1603 na FNOY01000142.1 unplaced-scaffold na na FNOY01000142.1 = NZ_FNOY01000142.1 Primary Assembly 1450 na FNOY01000143.1 unplaced-scaffold na na FNOY01000143.1 = NZ_FNOY01000143.1 Primary Assembly 1387 na FNOY01000144.1 unplaced-scaffold na na FNOY01000144.1 = NZ_FNOY01000144.1 Primary Assembly 1329 na FNOY01000145.1 unplaced-scaffold na na FNOY01000145.1 = NZ_FNOY01000145.1 Primary Assembly 1260 na FNOY01000146.1 unplaced-scaffold na na FNOY01000146.1 = NZ_FNOY01000146.1 Primary Assembly 1239 na FNOY01000147.1 unplaced-scaffold na na FNOY01000147.1 = NZ_FNOY01000147.1 Primary Assembly 1220 na FNOY01000148.1 unplaced-scaffold na na FNOY01000148.1 = NZ_FNOY01000148.1 Primary Assembly 1197 na FNOY01000149.1 unplaced-scaffold na na FNOY01000149.1 = NZ_FNOY01000149.1 Primary Assembly 1183 na FNOY01000150.1 unplaced-scaffold na na FNOY01000150.1 = NZ_FNOY01000150.1 Primary Assembly 1180 na FNOY01000151.1 unplaced-scaffold na na FNOY01000151.1 = NZ_FNOY01000151.1 Primary Assembly 1135 na FNOY01000152.1 unplaced-scaffold na na FNOY01000152.1 = NZ_FNOY01000152.1 Primary Assembly 1124 na FNOY01000153.1 unplaced-scaffold na na FNOY01000153.1 = NZ_FNOY01000153.1 Primary Assembly 1099 na FNOY01000154.1 unplaced-scaffold na na FNOY01000154.1 = NZ_FNOY01000154.1 Primary Assembly 1083 na FNOY01000155.1 unplaced-scaffold na na FNOY01000155.1 = NZ_FNOY01000155.1 Primary Assembly 1017 na FNOY01000156.1 unplaced-scaffold na na FNOY01000156.1 = NZ_FNOY01000156.1 Primary Assembly 1005 na