# Assembly name: IMG-taxon 2675903232 annotated assembly # Organism name: Halolactibacillus halophilus (firmicutes) # Infraspecific name: strain=DSM 17073 # Taxid: 306540 # BioSample: SAMN05421839 # BioProject: PRJEB17316 # Submitter: DOE - JOINT GENOME INSTITUTE # Date: 2016-11-02 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: FOXC01 # Assembly method: spades v. 3.6.2 # Genome coverage: 355x # Sequencing technology: Illumina HiSeq 2500-1TB # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_900115605.1 # RefSeq assembly accession: GCF_900115605.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_900115604.1 GCF_900115604.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name FOXC01000001.1 unplaced-scaffold na na FOXC01000001.1 = NZ_FOXC01000001.1 Primary Assembly 221429 na FOXC01000002.1 unplaced-scaffold na na FOXC01000002.1 = NZ_FOXC01000002.1 Primary Assembly 205625 na FOXC01000003.1 unplaced-scaffold na na FOXC01000003.1 = NZ_FOXC01000003.1 Primary Assembly 113613 na FOXC01000004.1 unplaced-scaffold na na FOXC01000004.1 = NZ_FOXC01000004.1 Primary Assembly 94460 na FOXC01000005.1 unplaced-scaffold na na FOXC01000005.1 = NZ_FOXC01000005.1 Primary Assembly 94195 na FOXC01000006.1 unplaced-scaffold na na FOXC01000006.1 = NZ_FOXC01000006.1 Primary Assembly 93639 na FOXC01000007.1 unplaced-scaffold na na FOXC01000007.1 = NZ_FOXC01000007.1 Primary Assembly 82628 na FOXC01000008.1 unplaced-scaffold na na FOXC01000008.1 = NZ_FOXC01000008.1 Primary Assembly 80546 na FOXC01000009.1 unplaced-scaffold na na FOXC01000009.1 = NZ_FOXC01000009.1 Primary Assembly 68531 na FOXC01000010.1 unplaced-scaffold na na FOXC01000010.1 = NZ_FOXC01000010.1 Primary Assembly 68316 na FOXC01000011.1 unplaced-scaffold na na FOXC01000011.1 = NZ_FOXC01000011.1 Primary Assembly 66333 na FOXC01000012.1 unplaced-scaffold na na FOXC01000012.1 = NZ_FOXC01000012.1 Primary Assembly 66092 na FOXC01000013.1 unplaced-scaffold na na FOXC01000013.1 = NZ_FOXC01000013.1 Primary Assembly 58351 na FOXC01000014.1 unplaced-scaffold na na FOXC01000014.1 = NZ_FOXC01000014.1 Primary Assembly 57488 na FOXC01000015.1 unplaced-scaffold na na FOXC01000015.1 = NZ_FOXC01000015.1 Primary Assembly 56881 na FOXC01000016.1 unplaced-scaffold na na FOXC01000016.1 = NZ_FOXC01000016.1 Primary Assembly 56257 na FOXC01000017.1 unplaced-scaffold na na FOXC01000017.1 = NZ_FOXC01000017.1 Primary Assembly 53618 na FOXC01000018.1 unplaced-scaffold na na FOXC01000018.1 = NZ_FOXC01000018.1 Primary Assembly 53566 na FOXC01000019.1 unplaced-scaffold na na FOXC01000019.1 = NZ_FOXC01000019.1 Primary Assembly 50163 na FOXC01000020.1 unplaced-scaffold na na FOXC01000020.1 = NZ_FOXC01000020.1 Primary Assembly 48355 na FOXC01000021.1 unplaced-scaffold na na FOXC01000021.1 = NZ_FOXC01000021.1 Primary Assembly 47850 na FOXC01000022.1 unplaced-scaffold na na FOXC01000022.1 = NZ_FOXC01000022.1 Primary Assembly 47277 na FOXC01000023.1 unplaced-scaffold na na FOXC01000023.1 = NZ_FOXC01000023.1 Primary Assembly 43166 na FOXC01000024.1 unplaced-scaffold na na FOXC01000024.1 = NZ_FOXC01000024.1 Primary Assembly 43027 na FOXC01000025.1 unplaced-scaffold na na FOXC01000025.1 = NZ_FOXC01000025.1 Primary Assembly 40952 na FOXC01000026.1 unplaced-scaffold na na FOXC01000026.1 = NZ_FOXC01000026.1 Primary Assembly 38925 na FOXC01000027.1 unplaced-scaffold na na FOXC01000027.1 = NZ_FOXC01000027.1 Primary Assembly 37347 na FOXC01000028.1 unplaced-scaffold na na FOXC01000028.1 = NZ_FOXC01000028.1 Primary Assembly 36228 na FOXC01000029.1 unplaced-scaffold na na FOXC01000029.1 = NZ_FOXC01000029.1 Primary Assembly 35886 na FOXC01000030.1 unplaced-scaffold na na FOXC01000030.1 = NZ_FOXC01000030.1 Primary Assembly 33526 na FOXC01000031.1 unplaced-scaffold na na FOXC01000031.1 = NZ_FOXC01000031.1 Primary Assembly 27174 na FOXC01000032.1 unplaced-scaffold na na FOXC01000032.1 = NZ_FOXC01000032.1 Primary Assembly 26556 na FOXC01000033.1 unplaced-scaffold na na FOXC01000033.1 = NZ_FOXC01000033.1 Primary Assembly 25882 na FOXC01000034.1 unplaced-scaffold na na FOXC01000034.1 = NZ_FOXC01000034.1 Primary Assembly 24404 na FOXC01000035.1 unplaced-scaffold na na FOXC01000035.1 = NZ_FOXC01000035.1 Primary Assembly 22892 na FOXC01000036.1 unplaced-scaffold na na FOXC01000036.1 = NZ_FOXC01000036.1 Primary Assembly 22628 na FOXC01000037.1 unplaced-scaffold na na FOXC01000037.1 = NZ_FOXC01000037.1 Primary Assembly 20771 na FOXC01000038.1 unplaced-scaffold na na FOXC01000038.1 = NZ_FOXC01000038.1 Primary Assembly 20535 na FOXC01000039.1 unplaced-scaffold na na FOXC01000039.1 = NZ_FOXC01000039.1 Primary Assembly 20376 na FOXC01000040.1 unplaced-scaffold na na FOXC01000040.1 = NZ_FOXC01000040.1 Primary Assembly 19638 na FOXC01000041.1 unplaced-scaffold na na FOXC01000041.1 = NZ_FOXC01000041.1 Primary Assembly 18575 na FOXC01000042.1 unplaced-scaffold na na FOXC01000042.1 = NZ_FOXC01000042.1 Primary Assembly 17884 na FOXC01000043.1 unplaced-scaffold na na FOXC01000043.1 = NZ_FOXC01000043.1 Primary Assembly 17496 na FOXC01000044.1 unplaced-scaffold na na FOXC01000044.1 = NZ_FOXC01000044.1 Primary Assembly 17209 na FOXC01000045.1 unplaced-scaffold na na FOXC01000045.1 = NZ_FOXC01000045.1 Primary Assembly 16907 na FOXC01000046.1 unplaced-scaffold na na FOXC01000046.1 = NZ_FOXC01000046.1 Primary Assembly 16829 na FOXC01000047.1 unplaced-scaffold na na FOXC01000047.1 = NZ_FOXC01000047.1 Primary Assembly 16555 na FOXC01000048.1 unplaced-scaffold na na FOXC01000048.1 = NZ_FOXC01000048.1 Primary Assembly 16274 na FOXC01000049.1 unplaced-scaffold na na FOXC01000049.1 = NZ_FOXC01000049.1 Primary Assembly 15733 na FOXC01000050.1 unplaced-scaffold na na FOXC01000050.1 = NZ_FOXC01000050.1 Primary Assembly 14590 na FOXC01000051.1 unplaced-scaffold na na FOXC01000051.1 = NZ_FOXC01000051.1 Primary Assembly 14504 na FOXC01000052.1 unplaced-scaffold na na FOXC01000052.1 = NZ_FOXC01000052.1 Primary Assembly 14066 na FOXC01000053.1 unplaced-scaffold na na FOXC01000053.1 = NZ_FOXC01000053.1 Primary Assembly 14016 na FOXC01000054.1 unplaced-scaffold na na FOXC01000054.1 = NZ_FOXC01000054.1 Primary Assembly 10861 na FOXC01000055.1 unplaced-scaffold na na FOXC01000055.1 = NZ_FOXC01000055.1 Primary Assembly 10152 na FOXC01000056.1 unplaced-scaffold na na FOXC01000056.1 = NZ_FOXC01000056.1 Primary Assembly 9950 na FOXC01000057.1 unplaced-scaffold na na FOXC01000057.1 = NZ_FOXC01000057.1 Primary Assembly 7903 na FOXC01000058.1 unplaced-scaffold na na FOXC01000058.1 = NZ_FOXC01000058.1 Primary Assembly 7881 na FOXC01000059.1 unplaced-scaffold na na FOXC01000059.1 = NZ_FOXC01000059.1 Primary Assembly 7787 na FOXC01000060.1 unplaced-scaffold na na FOXC01000060.1 = NZ_FOXC01000060.1 Primary Assembly 7448 na FOXC01000061.1 unplaced-scaffold na na FOXC01000061.1 = NZ_FOXC01000061.1 Primary Assembly 7173 na FOXC01000062.1 unplaced-scaffold na na FOXC01000062.1 = NZ_FOXC01000062.1 Primary Assembly 6497 na FOXC01000063.1 unplaced-scaffold na na FOXC01000063.1 = NZ_FOXC01000063.1 Primary Assembly 5925 na FOXC01000064.1 unplaced-scaffold na na FOXC01000064.1 = NZ_FOXC01000064.1 Primary Assembly 5756 na FOXC01000065.1 unplaced-scaffold na na FOXC01000065.1 = NZ_FOXC01000065.1 Primary Assembly 5740 na FOXC01000066.1 unplaced-scaffold na na FOXC01000066.1 = NZ_FOXC01000066.1 Primary Assembly 5213 na FOXC01000067.1 unplaced-scaffold na na FOXC01000067.1 = NZ_FOXC01000067.1 Primary Assembly 5108 na FOXC01000068.1 unplaced-scaffold na na FOXC01000068.1 = NZ_FOXC01000068.1 Primary Assembly 5047 na FOXC01000069.1 unplaced-scaffold na na FOXC01000069.1 = NZ_FOXC01000069.1 Primary Assembly 4947 na FOXC01000070.1 unplaced-scaffold na na FOXC01000070.1 = NZ_FOXC01000070.1 Primary Assembly 4157 na FOXC01000071.1 unplaced-scaffold na na FOXC01000071.1 = NZ_FOXC01000071.1 Primary Assembly 4099 na FOXC01000072.1 unplaced-scaffold na na FOXC01000072.1 = NZ_FOXC01000072.1 Primary Assembly 4054 na FOXC01000073.1 unplaced-scaffold na na FOXC01000073.1 = NZ_FOXC01000073.1 Primary Assembly 3156 na FOXC01000074.1 unplaced-scaffold na na FOXC01000074.1 = NZ_FOXC01000074.1 Primary Assembly 2849 na FOXC01000075.1 unplaced-scaffold na na FOXC01000075.1 = NZ_FOXC01000075.1 Primary Assembly 2616 na FOXC01000076.1 unplaced-scaffold na na FOXC01000076.1 = NZ_FOXC01000076.1 Primary Assembly 2436 na FOXC01000077.1 unplaced-scaffold na na FOXC01000077.1 = NZ_FOXC01000077.1 Primary Assembly 2349 na FOXC01000078.1 unplaced-scaffold na na FOXC01000078.1 = NZ_FOXC01000078.1 Primary Assembly 2346 na FOXC01000079.1 unplaced-scaffold na na FOXC01000079.1 = NZ_FOXC01000079.1 Primary Assembly 2292 na FOXC01000080.1 unplaced-scaffold na na FOXC01000080.1 = NZ_FOXC01000080.1 Primary Assembly 2232 na FOXC01000081.1 unplaced-scaffold na na FOXC01000081.1 = NZ_FOXC01000081.1 Primary Assembly 2209 na FOXC01000082.1 unplaced-scaffold na na FOXC01000082.1 = NZ_FOXC01000082.1 Primary Assembly 1970 na FOXC01000083.1 unplaced-scaffold na na FOXC01000083.1 = NZ_FOXC01000083.1 Primary Assembly 1906 na FOXC01000084.1 unplaced-scaffold na na FOXC01000084.1 = NZ_FOXC01000084.1 Primary Assembly 1815 na FOXC01000085.1 unplaced-scaffold na na FOXC01000085.1 = NZ_FOXC01000085.1 Primary Assembly 1667 na FOXC01000086.1 unplaced-scaffold na na FOXC01000086.1 = NZ_FOXC01000086.1 Primary Assembly 1609 na FOXC01000087.1 unplaced-scaffold na na FOXC01000087.1 = NZ_FOXC01000087.1 Primary Assembly 1568 na FOXC01000088.1 unplaced-scaffold na na FOXC01000088.1 = NZ_FOXC01000088.1 Primary Assembly 1427 na FOXC01000089.1 unplaced-scaffold na na FOXC01000089.1 = NZ_FOXC01000089.1 Primary Assembly 1394 na FOXC01000090.1 unplaced-scaffold na na FOXC01000090.1 = NZ_FOXC01000090.1 Primary Assembly 1304 na FOXC01000091.1 unplaced-scaffold na na FOXC01000091.1 = NZ_FOXC01000091.1 Primary Assembly 1220 na FOXC01000092.1 unplaced-scaffold na na FOXC01000092.1 = NZ_FOXC01000092.1 Primary Assembly 1168 na FOXC01000093.1 unplaced-scaffold na na FOXC01000093.1 = NZ_FOXC01000093.1 Primary Assembly 1054 na FOXC01000094.1 unplaced-scaffold na na FOXC01000094.1 = NZ_FOXC01000094.1 Primary Assembly 1041 na FOXC01000095.1 unplaced-scaffold na na FOXC01000095.1 = NZ_FOXC01000095.1 Primary Assembly 1007 na