hub GCF_900155605.1 genome assembly shortLabel Actinomyces marseillensis (Marseille-P2818T 2017) longLabel Actinomyces marseillensis (Marseille-P2818T 2017)/Actinomyces marseillensis/GCF_900155605.1_PRJEB18271 genome assembly useOneFile on email genome-www@soe.ucsc.edu descriptionUrl html/GCF_900155605.1_PRJEB18271.description.html genome GCF_900155605.1 taxId 1852376 groups groups.txt description Actinomyces marseillensis (Marseille-P2818T 2017) twoBitPath GCF_900155605.1.2bit twoBitBptUrl GCF_900155605.1.2bit.bpt chromSizes GCF_900155605.1.chrom.sizes.txt chromAliasBb GCF_900155605.1.chromAlias.bb organism PRJEB18271 Feb. 2017 defaultPos NZ_LT707420.1:667974-677974 scientificName Actinomyces marseillensis htmlPath html/GCF_900155605.1_PRJEB18271.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/900/155/605/GCF_900155605.1 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/900/155/605/GCF_900155605.1 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/900/155/605/GCF_900155605.1 track assembly longLabel Assembly shortLabel Assembly visibility hide colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCF_900155605.1_PRJEB18271.assembly.bb type bigBed 6 html html/GCF_900155605.1_PRJEB18271.assembly searchIndex name searchTrix ixIxx/GCF_900155605.1_PRJEB18271.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track gap longLabel AGP gap shortLabel Gap (AGP defined) visibility hide color 0,0,0 bigDataUrl bbi/GCF_900155605.1_PRJEB18271.gap.bb type bigBed 4 group map html html/GCF_900155605.1_PRJEB18271.gap track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCF_900155605.1_PRJEB18271.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility dense autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCF_900155605.1_PRJEB18271.gc5Base.bw html html/GCF_900155605.1_PRJEB18271.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCF_900155605.1_PRJEB18271.tanDups track gapOverlap parent tanDups on shortLabel Gap Overlaps longLabel Paired exactly identical sequence on each side of a gap bigDataUrl bbi/GCF_900155605.1_PRJEB18271.gapOverlap.bb type bigBed 12 track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCF_900155605.1_PRJEB18271.tandemDups.bb type bigBed 12 track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCF_900155605.1_PRJEB18271.simpleRepeat.bb html html/GCF_900155605.1_PRJEB18271.simpleRepeat track ncbiGene longLabel NCBI gene predictions shortLabel NCBI Genes visibility pack color 0,80,150 altColor 150,80,0 colorByStrand 0,80,150 150,80,0 bigDataUrl bbi/GCF_900155605.1_PRJEB18271.ncbiGene.bb type bigGenePred urls name2="https://www.ncbi.nlm.nih.gov/gene/?term=$$" geneName="https://www.ncbi.nlm.nih.gov/gene/$$" geneName2="https://www.ncbi.nlm.nih.gov/nuccore/$$" html html/GCF_900155605.1_PRJEB18271.ncbiGene searchIndex name searchTrix ixIxx/GCF_900155605.1_PRJEB18271.ncbiGene.ix urlLabel Entrez gene: labelFields name,geneName,geneName2 defaultLabelFields geneName2 group genes track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility dense type bigBed 4 + html html/GCF_900155605.1_PRJEB18271.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCF_900155605.1_PRJEB18271.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCF_900155605.1_PRJEB18271.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCF_900155605.1_PRJEB18271.windowMasker.bb html html/GCF_900155605.1_PRJEB18271.windowMasker track allGaps shortLabel All Gaps longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps group map visibility hide type bigBed 3 bigDataUrl bbi/GCF_900155605.1_PRJEB18271.allGaps.bb html html/GCF_900155605.1_PRJEB18271.allGaps