# Assembly name: fTakRub1.2 # Organism name: Takifugu rubripes (torafugu) # Taxid: 31033 # BioSample: SAMEA104384834 # BioProject: PRJEB31988 # Submitter: SC # Date: 2019-06-05 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAAJGN02 # Genome coverage: 83x # RefSeq category: Representative Genome # GenBank assembly accession: GCA_901000725.2 # RefSeq assembly accession: GCF_901000725.2 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_901000745.3 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_901000724.2 GCF_901000724.2 Primary Assembly ## GCF_000038315.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold_1 assembled-molecule 1 Chromosome LR584231.2 = NC_042285.1 Primary Assembly 29232231 na scaffold_8_arrow_ctg1 assembled-molecule 2 Chromosome LR584245.2 = NC_042286.1 Primary Assembly 15686389 na scaffold_3 assembled-molecule 3 Chromosome LR584237.1 = NC_042287.1 Primary Assembly 17484280 na scaffold_4 assembled-molecule 4 Chromosome LR584242.2 = NC_042288.1 Primary Assembly 16363587 na scaffold_5 assembled-molecule 5 Chromosome LR584247.1 = NC_042289.1 Primary Assembly 14586308 na scaffold_6 assembled-molecule 6 Chromosome LR584250.1 = NC_042290.1 Primary Assembly 12913240 na scaffold_7 assembled-molecule 7 Chromosome LR584238.1 = NC_042291.1 Primary Assembly 17515293 na scaffold_8 assembled-molecule 8 Chromosome LR584234.2 = NC_042292.1 Primary Assembly 19721368 na scaffold_1_arrow_ctg1_2 assembled-molecule 9 Chromosome LR584246.2 = NC_042293.1 Primary Assembly 15473624 na scaffold_10 assembled-molecule 10 Chromosome LR584251.2 = NC_042294.1 Primary Assembly 12556898 na scaffold_11 assembled-molecule 11 Chromosome LR584241.1 = NC_042295.1 Primary Assembly 16367601 na scaffold_12 assembled-molecule 12 Chromosome LR584248.2 = NC_042296.1 Primary Assembly 13571579 na scaffold_13 assembled-molecule 13 Chromosome LR584232.1 = NC_042297.1 Primary Assembly 21507415 na scaffold_14 assembled-molecule 14 Chromosome LR584244.1 = NC_042298.1 Primary Assembly 16036328 na scaffold_15 assembled-molecule 15 Chromosome LR584240.2 = NC_042299.1 Primary Assembly 16705553 na scaffold_16 assembled-molecule 16 Chromosome LR584249.2 = NC_042300.1 Primary Assembly 13527504 na scaffold_17 assembled-molecule 17 Chromosome LR584239.2 = NC_042301.1 Primary Assembly 16842301 na scaffold_18 assembled-molecule 18 Chromosome LR584252.2 = NC_042302.1 Primary Assembly 10237708 na scaffold_19 assembled-molecule 19 Chromosome LR584235.1 = NC_042303.1 Primary Assembly 19418397 na scaffold_20 assembled-molecule 20 Chromosome LR584236.2 = NC_042304.1 Primary Assembly 18239318 na scaffold_21 assembled-molecule 21 Chromosome LR584233.2 = NC_042305.1 Primary Assembly 20050447 na scaffold_22 assembled-molecule 22 Chromosome LR584243.1 = NC_042306.1 Primary Assembly 16056980 na contig1 unplaced-scaffold na na CAAJGN020000001.1 = NW_021821571.1 Primary Assembly 64808 na contig2 unplaced-scaffold na na CAAJGN020000002.1 = NW_021821572.1 Primary Assembly 63402 na contig3 unplaced-scaffold na na CAAJGN020000003.1 = NW_021821573.1 Primary Assembly 63354 na contig4 unplaced-scaffold na na CAAJGN020000004.1 = NW_021821574.1 Primary Assembly 63531 na contig5 unplaced-scaffold na na CAAJGN020000005.1 = NW_021821575.1 Primary Assembly 62646 na contig6 unplaced-scaffold na na CAAJGN020000006.1 = NW_021821576.1 Primary Assembly 62542 na contig7 unplaced-scaffold na na CAAJGN020000007.1 = NW_021821577.1 Primary Assembly 61109 na contig8 unplaced-scaffold na na CAAJGN020000008.1 = NW_021821578.1 Primary Assembly 59120 na contig9 unplaced-scaffold na na CAAJGN020000009.1 = NW_021821579.1 Primary Assembly 57647 na contig10 unplaced-scaffold na na CAAJGN020000010.1 = NW_021821580.1 Primary Assembly 56640 na contig11 unplaced-scaffold na na CAAJGN020000011.1 = NW_021821581.1 Primary Assembly 55156 na contig12 unplaced-scaffold na na CAAJGN020000012.1 = NW_021821582.1 Primary Assembly 55627 na contig13 unplaced-scaffold na na CAAJGN020000013.1 = NW_021821583.1 Primary Assembly 53958 na contig14 unplaced-scaffold na na CAAJGN020000014.1 = NW_021821584.1 Primary Assembly 53563 na contig15 unplaced-scaffold na na CAAJGN020000015.1 = NW_021821585.1 Primary Assembly 53340 na contig16 unplaced-scaffold na na CAAJGN020000016.1 = NW_021821586.1 Primary Assembly 53209 na contig17 unplaced-scaffold na na CAAJGN020000017.1 = NW_021821587.1 Primary Assembly 52850 na contig18 unplaced-scaffold na na CAAJGN020000018.1 = NW_021821588.1 Primary Assembly 52280 na contig19 unplaced-scaffold na na CAAJGN020000019.1 = NW_021821589.1 Primary Assembly 51742 na contig20 unplaced-scaffold na na CAAJGN020000020.1 = NW_021821590.1 Primary Assembly 51609 na contig21 unplaced-scaffold na na CAAJGN020000021.1 = NW_021821591.1 Primary Assembly 51368 na contig22 unplaced-scaffold na na CAAJGN020000022.1 = NW_021821592.1 Primary Assembly 50761 na contig23 unplaced-scaffold na na CAAJGN020000023.1 = NW_021821593.1 Primary Assembly 50749 na contig24 unplaced-scaffold na na CAAJGN020000024.1 = NW_021821594.1 Primary Assembly 50425 na contig25 unplaced-scaffold na na CAAJGN020000025.1 = NW_021821595.1 Primary Assembly 50389 na contig26 unplaced-scaffold na na CAAJGN020000026.1 = NW_021821596.1 Primary Assembly 50227 na contig27 unplaced-scaffold na na CAAJGN020000027.1 = NW_021821597.1 Primary Assembly 50162 na contig28 unplaced-scaffold na na CAAJGN020000028.1 = NW_021821598.1 Primary Assembly 50377 na contig29 unplaced-scaffold na na CAAJGN020000029.1 = NW_021821599.1 Primary Assembly 50254 na contig30 unplaced-scaffold na na CAAJGN020000030.1 = NW_021821600.1 Primary Assembly 50253 na contig31 unplaced-scaffold na na CAAJGN020000031.1 = NW_021821601.1 Primary Assembly 50112 na contig32 unplaced-scaffold na na CAAJGN020000032.1 = NW_021821602.1 Primary Assembly 50090 na contig33 unplaced-scaffold na na CAAJGN020000033.1 = NW_021821603.1 Primary Assembly 49996 na contig34 unplaced-scaffold na na CAAJGN020000034.1 = NW_021821604.1 Primary Assembly 50032 na contig35 unplaced-scaffold na na CAAJGN020000035.1 = NW_021821605.1 Primary Assembly 50373 na contig36 unplaced-scaffold na na CAAJGN020000036.1 = NW_021821606.1 Primary Assembly 49999 na contig37 unplaced-scaffold na na CAAJGN020000037.1 = NW_021821607.1 Primary Assembly 50025 na contig38 unplaced-scaffold na na CAAJGN020000038.1 = NW_021821608.1 Primary Assembly 50167 na contig39 unplaced-scaffold na na CAAJGN020000039.1 = NW_021821609.1 Primary Assembly 50000 na contig40 unplaced-scaffold na na CAAJGN020000040.1 = NW_021821610.1 Primary Assembly 50001 na contig41 unplaced-scaffold na na CAAJGN020000041.1 = NW_021821611.1 Primary Assembly 50041 na contig42 unplaced-scaffold na na CAAJGN020000042.1 = NW_021821612.1 Primary Assembly 50222 na contig43 unplaced-scaffold na na CAAJGN020000043.1 = NW_021821613.1 Primary Assembly 49979 na contig44 unplaced-scaffold na na CAAJGN020000044.1 = NW_021821614.1 Primary Assembly 50033 na contig45 unplaced-scaffold na na CAAJGN020000045.1 = NW_021821615.1 Primary Assembly 50114 na contig46 unplaced-scaffold na na CAAJGN020000046.1 = NW_021821616.1 Primary Assembly 49949 na contig47 unplaced-scaffold na na CAAJGN020000047.1 = NW_021821617.1 Primary Assembly 50175 na contig48 unplaced-scaffold na na CAAJGN020000048.1 = NW_021821618.1 Primary Assembly 49596 na contig49 unplaced-scaffold na na CAAJGN020000049.1 = NW_021821619.1 Primary Assembly 45360 na contig50 unplaced-scaffold na na CAAJGN020000050.1 = NW_021821620.1 Primary Assembly 44590 na contig51 unplaced-scaffold na na CAAJGN020000051.1 = NW_021821621.1 Primary Assembly 43349 na contig52 unplaced-scaffold na na CAAJGN020000052.1 = NW_021821622.1 Primary Assembly 42007 na contig53 unplaced-scaffold na na CAAJGN020000053.1 = NW_021821623.1 Primary Assembly 41911 na contig54 unplaced-scaffold na na CAAJGN020000054.1 = NW_021821624.1 Primary Assembly 41550 na contig55 unplaced-scaffold na na CAAJGN020000055.1 = NW_021821625.1 Primary Assembly 38939 na contig56 unplaced-scaffold na na CAAJGN020000056.1 = NW_021821626.1 Primary Assembly 38198 na contig57 unplaced-scaffold na na CAAJGN020000057.1 = NW_021821627.1 Primary Assembly 37981 na contig58 unplaced-scaffold na na CAAJGN020000058.1 = NW_021821628.1 Primary Assembly 34550 na contig59 unplaced-scaffold na na CAAJGN020000059.1 = NW_021821629.1 Primary Assembly 33003 na contig60 unplaced-scaffold na na CAAJGN020000060.1 = NW_021821630.1 Primary Assembly 28435 na contig61 unplaced-scaffold na na CAAJGN020000061.1 = NW_021821631.1 Primary Assembly 27229 na contig62 unplaced-scaffold na na CAAJGN020000062.1 = NW_021821632.1 Primary Assembly 1821850 na contig63 unplaced-scaffold na na CAAJGN020000063.1 = NW_021821633.1 Primary Assembly 1663156 na contig64 unplaced-scaffold na na CAAJGN020000064.1 = NW_021821634.1 Primary Assembly 709685 na contig65 unplaced-scaffold na na CAAJGN020000065.1 = NW_021821635.1 Primary Assembly 593852 na contig66 unplaced-scaffold na na CAAJGN020000066.1 = NW_021821636.1 Primary Assembly 495635 na contig67 unplaced-scaffold na na CAAJGN020000067.1 = NW_021821637.1 Primary Assembly 488475 na contig68 unplaced-scaffold na na CAAJGN020000068.1 = NW_021821638.1 Primary Assembly 424119 na contig69 unplaced-scaffold na na CAAJGN020000069.1 = NW_021821639.1 Primary Assembly 392854 na contig70 unplaced-scaffold na na CAAJGN020000070.1 = NW_021821640.1 Primary Assembly 270242 na contig71 unplaced-scaffold na na CAAJGN020000071.1 = NW_021821641.1 Primary Assembly 255904 na contig72 unplaced-scaffold na na CAAJGN020000072.1 = NW_021821642.1 Primary Assembly 254385 na contig73 unplaced-scaffold na na CAAJGN020000073.1 = NW_021821643.1 Primary Assembly 236423 na contig74 unplaced-scaffold na na CAAJGN020000074.1 = NW_021821644.1 Primary Assembly 211741 na contig75 unplaced-scaffold na na CAAJGN020000075.1 = NW_021821645.1 Primary Assembly 186832 na contig76 unplaced-scaffold na na CAAJGN020000076.1 = NW_021821646.1 Primary Assembly 151935 na contig77 unplaced-scaffold na na CAAJGN020000077.1 = NW_021821647.1 Primary Assembly 151188 na contig78 unplaced-scaffold na na CAAJGN020000078.1 = NW_021821648.1 Primary Assembly 145393 na contig79 unplaced-scaffold na na CAAJGN020000079.1 = NW_021821649.1 Primary Assembly 132468 na contig80 unplaced-scaffold na na CAAJGN020000080.1 = NW_021821650.1 Primary Assembly 127178 na contig81 unplaced-scaffold na na CAAJGN020000081.1 = NW_021821651.1 Primary Assembly 119523 na contig82 unplaced-scaffold na na CAAJGN020000082.1 = NW_021821652.1 Primary Assembly 113683 na contig83 unplaced-scaffold na na CAAJGN020000083.1 = NW_021821653.1 Primary Assembly 113094 na contig84 unplaced-scaffold na na CAAJGN020000084.1 = NW_021821654.1 Primary Assembly 113173 na contig85 unplaced-scaffold na na CAAJGN020000085.1 = NW_021821655.1 Primary Assembly 112587 na contig86 unplaced-scaffold na na CAAJGN020000086.1 = NW_021821656.1 Primary Assembly 104956 na contig87 unplaced-scaffold na na CAAJGN020000087.1 = NW_021821657.1 Primary Assembly 99329 na contig88 unplaced-scaffold na na CAAJGN020000088.1 = NW_021821658.1 Primary Assembly 98866 na contig89 unplaced-scaffold na na CAAJGN020000089.1 = NW_021821659.1 Primary Assembly 97924 na contig90 unplaced-scaffold na na CAAJGN020000090.1 = NW_021821660.1 Primary Assembly 90775 na contig91 unplaced-scaffold na na CAAJGN020000091.1 = NW_021821661.1 Primary Assembly 90358 na contig92 unplaced-scaffold na na CAAJGN020000092.1 = NW_021821662.1 Primary Assembly 89859 na contig93 unplaced-scaffold na na CAAJGN020000093.1 = NW_021821663.1 Primary Assembly 87595 na contig94 unplaced-scaffold na na CAAJGN020000094.1 = NW_021821664.1 Primary Assembly 83211 na contig95 unplaced-scaffold na na CAAJGN020000095.1 = NW_021821665.1 Primary Assembly 83133 na contig96 unplaced-scaffold na na CAAJGN020000096.1 = NW_021821666.1 Primary Assembly 83591 na contig97 unplaced-scaffold na na CAAJGN020000097.1 = NW_021821667.1 Primary Assembly 82099 na contig98 unplaced-scaffold na na CAAJGN020000098.1 = NW_021821668.1 Primary Assembly 79239 na contig99 unplaced-scaffold na na CAAJGN020000099.1 = NW_021821669.1 Primary Assembly 76320 na contig100 unplaced-scaffold na na CAAJGN020000100.1 = NW_021821670.1 Primary Assembly 76206 na contig101 unplaced-scaffold na na CAAJGN020000101.1 = NW_021821671.1 Primary Assembly 75961 na contig102 unplaced-scaffold na na CAAJGN020000102.1 = NW_021821672.1 Primary Assembly 71604 na contig103 unplaced-scaffold na na CAAJGN020000103.1 = NW_021821673.1 Primary Assembly 71650 na contig104 unplaced-scaffold na na CAAJGN020000104.1 = NW_021821674.1 Primary Assembly 68315 na contig105 unplaced-scaffold na na CAAJGN020000105.1 = NW_021821675.1 Primary Assembly 68396 na MT assembled-molecule MT Mitochondrion na <> NC_004299.1 non-nuclear 16447 chrM