# Assembly name: ilCydSple1.2 # Organism name: Cydia splendana (moths) # Taxid: 1100963 # BioSample: SAMEA7701547 # BioProject: PRJEB45453 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2022-10-11 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAJUYE02 # Assembly method: various # Genome coverage: 36x # Sequencing technology: PacBio,Illumina,Arima # RefSeq category: Representative Genome # GenBank assembly accession: GCA_910591565.2 # RefSeq assembly accession: GCF_910591565.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_910591564.2 GCF_910591564.1 Primary Assembly ## GCA_910591566.2 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OU342872.1 = NC_085960.1 Primary Assembly 36108118 na SUPER_2 assembled-molecule 2 Chromosome OU342873.1 = NC_085961.1 Primary Assembly 31490872 na SUPER_3 assembled-molecule 3 Chromosome OU342874.1 = NC_085962.1 Primary Assembly 28508080 na SUPER_4 assembled-molecule 4 Chromosome OU342875.1 = NC_085963.1 Primary Assembly 25629753 na SUPER_5 assembled-molecule 5 Chromosome OU342876.1 = NC_085964.1 Primary Assembly 25305885 na SUPER_6 assembled-molecule 6 Chromosome OU342877.1 = NC_085965.1 Primary Assembly 24834953 na SUPER_7 assembled-molecule 7 Chromosome OU342878.1 = NC_085966.1 Primary Assembly 23524037 na SUPER_8 assembled-molecule 8 Chromosome OU342879.1 = NC_085967.1 Primary Assembly 23317901 na SUPER_9 assembled-molecule 9 Chromosome OU342880.1 = NC_085968.1 Primary Assembly 22981268 na SUPER_10 assembled-molecule 10 Chromosome OU342881.1 = NC_085969.1 Primary Assembly 22557665 na SUPER_11 assembled-molecule 11 Chromosome OU342882.1 = NC_085970.1 Primary Assembly 22055301 na SUPER_12 assembled-molecule 12 Chromosome OU342883.1 = NC_085971.1 Primary Assembly 21274828 na SUPER_13 assembled-molecule 13 Chromosome OU342884.1 = NC_085972.1 Primary Assembly 21087900 na SUPER_14 assembled-molecule 14 Chromosome OU342885.1 = NC_085973.1 Primary Assembly 19832212 na SUPER_15 assembled-molecule 15 Chromosome OU342886.1 = NC_085974.1 Primary Assembly 19691877 na SUPER_16 assembled-molecule 16 Chromosome OU342887.1 = NC_085975.1 Primary Assembly 19547813 na SUPER_17 assembled-molecule 17 Chromosome OU342888.1 = NC_085976.1 Primary Assembly 19197471 na SUPER_18 assembled-molecule 18 Chromosome OU342889.1 = NC_085977.1 Primary Assembly 18985988 na SUPER_19 assembled-molecule 19 Chromosome OU342890.1 = NC_085978.1 Primary Assembly 17389724 na SUPER_20 assembled-molecule 20 Chromosome OU342891.1 = NC_085979.1 Primary Assembly 16596891 na SUPER_21 assembled-molecule 21 Chromosome OU342892.1 = NC_085980.1 Primary Assembly 15656045 na SUPER_22 assembled-molecule 22 Chromosome OU342893.1 = NC_085981.1 Primary Assembly 13997743 na SUPER_23 assembled-molecule 23 Chromosome OU342894.1 = NC_085982.1 Primary Assembly 13595625 na SUPER_24 assembled-molecule 24 Chromosome OU342895.1 = NC_085983.1 Primary Assembly 11769289 na SUPER_25 assembled-molecule 25 Chromosome OU342896.1 = NC_085984.1 Primary Assembly 11648489 na SUPER_26 assembled-molecule 26 Chromosome OU342897.1 = NC_085985.1 Primary Assembly 11632898 na SUPER_27 assembled-molecule 27 Chromosome OU342898.1 = NC_085986.1 Primary Assembly 9886310 na SUPER_Z assembled-molecule Z Chromosome OU342871.1 = NC_085987.1 Primary Assembly 49817474 na scaffold_103_ctg1 unplaced-scaffold na na CAJUYE020000001.1 = NW_026946832.1 Primary Assembly 290454 na scaffold_104_ctg1 unplaced-scaffold na na CAJUYE020000002.1 = NW_026946833.1 Primary Assembly 289884 na scaffold_106_ctg1 unplaced-scaffold na na CAJUYE020000003.1 = NW_026946834.1 Primary Assembly 252980 na scaffold_10_ctg1A unplaced-scaffold na na CAJUYE020000004.1 = NW_026946835.1 Primary Assembly 1120197 na scaffold_110_ctg1 unplaced-scaffold na na CAJUYE020000005.1 = NW_026946836.1 Primary Assembly 236267 na scaffold_111_ctg1 unplaced-scaffold na na CAJUYE020000006.1 = NW_026946837.1 Primary Assembly 232133 na scaffold_113_ctg1 unplaced-scaffold na na CAJUYE020000007.1 = NW_026946838.1 Primary Assembly 224534 na scaffold_114_ctg1 unplaced-scaffold na na CAJUYE020000008.1 = NW_026946839.1 Primary Assembly 222745 na scaffold_115_ctg1 unplaced-scaffold na na CAJUYE020000009.1 = NW_026946840.1 Primary Assembly 222205 na scaffold_116_ctg1 unplaced-scaffold na na CAJUYE020000010.1 = NW_026946841.1 Primary Assembly 211219 na scaffold_117_ctg1 unplaced-scaffold na na CAJUYE020000011.1 = NW_026946842.1 Primary Assembly 208974 na scaffold_118_ctg1 unplaced-scaffold na na CAJUYE020000012.1 = NW_026946843.1 Primary Assembly 202684 na scaffold_119_ctg1 unplaced-scaffold na na CAJUYE020000013.1 = NW_026946844.1 Primary Assembly 196497 na scaffold_121_ctg1 unplaced-scaffold na na CAJUYE020000014.1 = NW_026946845.1 Primary Assembly 190456 na scaffold_122_ctg1 unplaced-scaffold na na CAJUYE020000015.1 = NW_026946846.1 Primary Assembly 182833 na scaffold_123_ctg1 unplaced-scaffold na na CAJUYE020000016.1 = NW_026946847.1 Primary Assembly 167190 na scaffold_124_ctg1 unplaced-scaffold na na CAJUYE020000017.1 = NW_026946848.1 Primary Assembly 161200 na scaffold_125_ctg1 unplaced-scaffold na na CAJUYE020000018.1 = NW_026946849.1 Primary Assembly 158287 na scaffold_127_ctg1 unplaced-scaffold na na CAJUYE020000019.1 = NW_026946850.1 Primary Assembly 148596 na scaffold_128_ctg1 unplaced-scaffold na na CAJUYE020000020.1 = NW_026946851.1 Primary Assembly 146373 na scaffold_130_ctg1 unplaced-scaffold na na CAJUYE020000021.1 = NW_026946852.1 Primary Assembly 136103 na scaffold_131_ctg1 unplaced-scaffold na na CAJUYE020000022.1 = NW_026946853.1 Primary Assembly 130624 na scaffold_132_ctg1 unplaced-scaffold na na CAJUYE020000023.1 = NW_026946854.1 Primary Assembly 127790 na scaffold_133_ctg1 unplaced-scaffold na na CAJUYE020000024.1 = NW_026946855.1 Primary Assembly 123553 na scaffold_135_ctg1 unplaced-scaffold na na CAJUYE020000025.1 = NW_026946856.1 Primary Assembly 117992 na scaffold_136_ctg1 unplaced-scaffold na na CAJUYE020000026.1 = NW_026946857.1 Primary Assembly 112055 na scaffold_138_ctg1 unplaced-scaffold na na CAJUYE020000027.1 = NW_026946858.1 Primary Assembly 104638 na scaffold_140_ctg1 unplaced-scaffold na na CAJUYE020000028.1 = NW_026946859.1 Primary Assembly 99848 na scaffold_142_ctg1 unplaced-scaffold na na CAJUYE020000029.1 = NW_026946860.1 Primary Assembly 93382 na scaffold_143_ctg1 unplaced-scaffold na na CAJUYE020000030.1 = NW_026946861.1 Primary Assembly 89921 na scaffold_147_ctg1 unplaced-scaffold na na CAJUYE020000031.1 = NW_026946862.1 Primary Assembly 80889 na scaffold_148_ctg1 unplaced-scaffold na na CAJUYE020000032.1 = NW_026946863.1 Primary Assembly 74964 na scaffold_149_ctg1 unplaced-scaffold na na CAJUYE020000033.1 = NW_026946864.1 Primary Assembly 68391 na scaffold_150_ctg1 unplaced-scaffold na na CAJUYE020000034.1 = NW_026946865.1 Primary Assembly 68137 na scaffold_151_ctg1 unplaced-scaffold na na CAJUYE020000035.1 = NW_026946866.1 Primary Assembly 67229 na scaffold_152_ctg1 unplaced-scaffold na na CAJUYE020000036.1 = NW_026946867.1 Primary Assembly 65838 na scaffold_153_ctg1 unplaced-scaffold na na CAJUYE020000037.1 = NW_026946868.1 Primary Assembly 63146 na scaffold_154_ctg1 unplaced-scaffold na na CAJUYE020000038.1 = NW_026946869.1 Primary Assembly 59781 na scaffold_155_ctg1 unplaced-scaffold na na CAJUYE020000039.1 = NW_026946870.1 Primary Assembly 56069 na scaffold_156_ctg1 unplaced-scaffold na na CAJUYE020000040.1 = NW_026946871.1 Primary Assembly 52307 na scaffold_157_ctg1 unplaced-scaffold na na CAJUYE020000041.1 = NW_026946872.1 Primary Assembly 50915 na scaffold_158_ctg1 unplaced-scaffold na na CAJUYE020000042.1 = NW_026946873.1 Primary Assembly 48864 na scaffold_159_ctg1 unplaced-scaffold na na CAJUYE020000043.1 = NW_026946874.1 Primary Assembly 48466 na scaffold_160_ctg1 unplaced-scaffold na na CAJUYE020000044.1 = NW_026946875.1 Primary Assembly 42525 na scaffold_161_ctg1 unplaced-scaffold na na CAJUYE020000045.1 = NW_026946876.1 Primary Assembly 33624 na scaffold_162_ctg1 unplaced-scaffold na na CAJUYE020000046.1 = NW_026946877.1 Primary Assembly 28314 na scaffold_163_ctg1 unplaced-scaffold na na CAJUYE020000047.1 = NW_026946878.1 Primary Assembly 26556 na scaffold_164_ctg1 unplaced-scaffold na na CAJUYE020000048.1 = NW_026946879.1 Primary Assembly 24421 na scaffold_165_ctg1 unplaced-scaffold na na CAJUYE020000049.1 = NW_026946880.1 Primary Assembly 21204 na scaffold_166_ctg1 unplaced-scaffold na na CAJUYE020000050.1 = NW_026946881.1 Primary Assembly 20692 na scaffold_167_ctg1 unplaced-scaffold na na CAJUYE020000051.1 = NW_026946882.1 Primary Assembly 20270 na scaffold_168_ctg1 unplaced-scaffold na na CAJUYE020000052.1 = NW_026946883.1 Primary Assembly 19562 na scaffold_169_ctg1 unplaced-scaffold na na CAJUYE020000053.1 = NW_026946884.1 Primary Assembly 17643 na scaffold_170_ctg1 unplaced-scaffold na na CAJUYE020000054.1 = NW_026946885.1 Primary Assembly 17504 na scaffold_171_ctg1 unplaced-scaffold na na CAJUYE020000055.1 = NW_026946886.1 Primary Assembly 17132 na scaffold_42_ctg1 unplaced-scaffold na na CAJUYE020000056.1 = NW_026946887.1 Primary Assembly 1821064 na scaffold_45_ctg1 unplaced-scaffold na na CAJUYE020000057.1 = NW_026946888.1 Primary Assembly 1732411 na scaffold_46_ctg1 unplaced-scaffold na na CAJUYE020000058.1 = NW_026946889.1 Primary Assembly 1683886 na scaffold_47_ctg1 unplaced-scaffold na na CAJUYE020000059.1 = NW_026946890.1 Primary Assembly 1632242 na scaffold_48_ctg1 unplaced-scaffold na na CAJUYE020000060.1 = NW_026946891.1 Primary Assembly 1556851 na scaffold_49_ctg1 unplaced-scaffold na na CAJUYE020000061.1 = NW_026946892.1 Primary Assembly 1546780 na scaffold_50_ctg1 unplaced-scaffold na na CAJUYE020000062.1 = NW_026946893.1 Primary Assembly 1526346 na scaffold_57_ctg1 unplaced-scaffold na na CAJUYE020000063.1 = NW_026946894.1 Primary Assembly 1131185 na scaffold_59_ctg1 unplaced-scaffold na na CAJUYE020000064.1 = NW_026946895.1 Primary Assembly 1083270 na scaffold_63_ctg1 unplaced-scaffold na na CAJUYE020000065.1 = NW_026946896.1 Primary Assembly 956200 na scaffold_66_ctg1 unplaced-scaffold na na CAJUYE020000066.1 = NW_026946897.1 Primary Assembly 876120 na scaffold_68_ctg1 unplaced-scaffold na na CAJUYE020000067.1 = NW_026946898.1 Primary Assembly 814966 na scaffold_69_ctg1 unplaced-scaffold na na CAJUYE020000068.1 = NW_026946899.1 Primary Assembly 799861 na scaffold_70_ctg1 unplaced-scaffold na na CAJUYE020000069.1 = NW_026946900.1 Primary Assembly 796531 na scaffold_71_ctg1 unplaced-scaffold na na CAJUYE020000070.1 = NW_026946901.1 Primary Assembly 736465 na scaffold_72_ctg1 unplaced-scaffold na na CAJUYE020000071.1 = NW_026946902.1 Primary Assembly 734262 na scaffold_73_ctg1 unplaced-scaffold na na CAJUYE020000072.1 = NW_026946903.1 Primary Assembly 726669 na scaffold_75_ctg1 unplaced-scaffold na na CAJUYE020000073.1 = NW_026946904.1 Primary Assembly 679551 na scaffold_78_ctg1 unplaced-scaffold na na CAJUYE020000074.1 = NW_026946905.1 Primary Assembly 590374 na scaffold_80_ctg1 unplaced-scaffold na na CAJUYE020000075.1 = NW_026946906.1 Primary Assembly 577128 na scaffold_81_ctg1 unplaced-scaffold na na CAJUYE020000076.1 = NW_026946907.1 Primary Assembly 555513 na scaffold_86_ctg1 unplaced-scaffold na na CAJUYE020000077.1 = NW_026946908.1 Primary Assembly 505430 na scaffold_89_ctg1 unplaced-scaffold na na CAJUYE020000078.1 = NW_026946909.1 Primary Assembly 449883 na scaffold_92_ctg1 unplaced-scaffold na na CAJUYE020000079.1 = NW_026946910.1 Primary Assembly 406611 na scaffold_94_ctg1 unplaced-scaffold na na CAJUYE020000080.1 = NW_026946911.1 Primary Assembly 384002 na scaffold_95_ctg1 unplaced-scaffold na na CAJUYE020000081.1 = NW_026946912.1 Primary Assembly 360940 na scaffold_96_ctg1 unplaced-scaffold na na CAJUYE020000082.1 = NW_026946913.1 Primary Assembly 360538 na scaffold_97_ctg1 unplaced-scaffold na na CAJUYE020000083.1 = NW_026946914.1 Primary Assembly 358103 na scaffold_MT_1 assembled-molecule MT Mitochondrion OU342899.2 <> na non-nuclear 16672 na