hub GCF_946890845.1 genome assembly
shortLabel Klebsiella phage cp5 (2026)
longLabel Klebsiella phage cp5 (2026)/Klebsiella phage cp5/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5 genome assembly
useOneFile on
email genome-www@soe.ucsc.edu
descriptionUrl html/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.description.html

genome GCF_946890845.1
taxId 2972818
groups groups.txt
description Klebsiella phage cp5 (2026)
twoBitPath GCF_946890845.1.2bit
twoBitBptUrl GCF_946890845.1.2bit.bpt
chromSizes GCF_946890845.1.chrom.sizes.txt
chromAliasBb GCF_946890845.1.chromAlias.bb
organism Genome_sequence_of_Klebsiella_phage_cp5 Apr. 2026
defaultPos NC_138484.1:16455-26455
scientificName Klebsiella phage cp5
htmlPath html/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.description.html
blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/946/890/845/GCF_946890845.1
transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/946/890/845/GCF_946890845.1
isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/946/890/845/GCF_946890845.1

track assembly
longLabel Assembly
shortLabel Assembly
visibility hide
colorByStrand 150,100,30 230,170,40
color 150,100,30
altColor 230,170,40
bigDataUrl bbi/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.assembly.bb
type bigBed 6
html html/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.assembly
searchIndex name
searchTrix ixIxx/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.assembly.ix
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
group map

track cytoBandIdeo
shortLabel Chromosome Band (Ideogram)
longLabel Ideogram for Orientation
group map
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.cytoBand.bb

# gcOnFly is a synthetic track, computed at run time
# this trackDb entry will allow it to operate properly with
# correct visibility when a saved session is restored
track gcOnFly
shortLabel GC Percent
longLabel GC Percent in 5-Base Windows
group map
visibility dense
type bigWig 0 100
bigDataUrl bbi/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.gcOnFly.bw
gcOnFlyMaxDensity 50000
syntheticTrack on
calcWinSize 5
autoScale Off
viewLimits 30:70
maxHeightPixels 128:36:16
graphTypeDefault Bar
gridDefault OFF
windowingFunction Mean
color 0,0,0
altColor 128,128,128
html html/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.gcOnFly

track repeatMasker
shortLabel RepeatMasker
longLabel RepeatMasker Repetitive Elements
type bigRmsk 9 +
visibility pack
group varRep
bigDataUrl bbi/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.rmsk.bb
xrefDataUrl bbi/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.rmsk.align.bb
maxWindowToDraw 5000000
html html/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.repeatMasker

track simpleRepeat
shortLabel Simple Repeats
longLabel Simple Tandem Repeats by TRF
group varRep
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.simpleRepeat.bb
html html/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.simpleRepeat

track cpgIslands
compositeTrack on
shortLabel CpG Islands
longLabel CpG Islands (Islands < 300 Bases are Light Green)
group regulation
visibility dense
type bigBed 4 +
html html/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.cpgIslands

    track cpgIslandExt
    parent cpgIslands off
    shortLabel CpG Islands
    longLabel CpG Islands (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 1
    bigDataUrl bbi/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.cpgIslandExt.bb

    track cpgIslandExtUnmasked
    parent cpgIslands on
    shortLabel Unmasked CpG
    longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 2
    bigDataUrl bbi/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.cpgIslandExtUnmasked.bb

track windowMasker
shortLabel WM + SDust
longLabel Genomic Intervals Masked by WindowMasker + SDust
group varRep
visibility dense
type bigBed 3
bigDataUrl bbi/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.windowMasker.bb
html html/GCF_946890845.1_Genome_sequence_of_Klebsiella_phage_cp5.windowMasker