# Assembly name: fRutRut2.1 # Organism name: Rutilus rutilus (roach minnow) # Taxid: 48668 # BioSample: SAMEA11296543 # BioProject: PRJEB62672 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2023-05-30 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CATOQP01 # Assembly method: various # Genome coverage: 45x # Sequencing technology: PacBio,Arima2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_951802725.1 # RefSeq assembly accession: GCF_951802725.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_951802655.1 (alternate pseudohaplotype of diploid) # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OX637933.1 = NC_140209.1 Primary Assembly 80293868 na SUPER_2 assembled-molecule 2 Chromosome OX637934.1 = NC_140210.1 Primary Assembly 62442429 na SUPER_3 assembled-molecule 3 Chromosome OX637935.1 = NC_140211.1 Primary Assembly 60222160 na SUPER_4 assembled-molecule 4 Chromosome OX637936.1 = NC_140212.1 Primary Assembly 53340244 na SUPER_5 assembled-molecule 5 Chromosome OX637937.1 = NC_140213.1 Primary Assembly 50610928 na SUPER_6 assembled-molecule 6 Chromosome OX637938.1 = NC_140214.1 Primary Assembly 50383686 na SUPER_7 assembled-molecule 7 Chromosome OX637939.1 = NC_140221.1 Primary Assembly 49078638 na SUPER_8 assembled-molecule 8 Chromosome OX637940.1 = NC_140222.1 Primary Assembly 47669334 na SUPER_9 assembled-molecule 9 Chromosome OX637941.1 = NC_140223.1 Primary Assembly 45038550 na SUPER_10 assembled-molecule 10 Chromosome OX637942.1 = NC_140215.1 Primary Assembly 44282282 na SUPER_11 assembled-molecule 11 Chromosome OX637943.1 = NC_140216.1 Primary Assembly 43935812 na SUPER_12 assembled-molecule 12 Chromosome OX637944.1 = NC_140217.1 Primary Assembly 41900489 na SUPER_13 assembled-molecule 13 Chromosome OX637945.1 = NC_140218.1 Primary Assembly 41121318 na SUPER_14 assembled-molecule 14 Chromosome OX637946.1 = NC_140219.1 Primary Assembly 41000456 na SUPER_15 assembled-molecule 15 Chromosome OX637947.1 = NC_140220.1 Primary Assembly 38723388 na SUPER_16 assembled-molecule 16 Chromosome OX637948.1 = NC_140224.1 Primary Assembly 38055493 na SUPER_17 assembled-molecule 17 Chromosome OX637949.1 = NC_140230.1 Primary Assembly 37648602 na SUPER_18 assembled-molecule 18 Chromosome OX637950.1 = NC_140231.1 Primary Assembly 36984504 na SUPER_19 assembled-molecule 19 Chromosome OX637951.1 = NC_140232.1 Primary Assembly 36075496 na SUPER_20 assembled-molecule 20 Chromosome OX637952.1 = NC_140225.1 Primary Assembly 35861550 na SUPER_21 assembled-molecule 21 Chromosome OX637953.1 = NC_140226.1 Primary Assembly 35340388 na SUPER_22 assembled-molecule 22 Chromosome OX637954.1 = NC_140227.1 Primary Assembly 32923499 na SUPER_23 assembled-molecule 23 Chromosome OX637955.1 = NC_140233.1 Primary Assembly 31304857 na SUPER_24 assembled-molecule 24 Chromosome OX637956.1 = NC_140228.1 Primary Assembly 30861874 na SUPER_25 assembled-molecule 25 Chromosome OX637957.1 = NC_140229.1 Primary Assembly 30221954 na SCAFFOLD_74 unplaced-scaffold na na CATOQP010000001.1 = NW_028175496.1 Primary Assembly 82000 na SCAFFOLD_94 unplaced-scaffold na na CATOQP010000002.1 = NW_028175495.1 Primary Assembly 33218 na SCAFFOLD_68 unplaced-scaffold na na CATOQP010000003.1 = NW_028175494.1 Primary Assembly 111979 na SCAFFOLD_76 unplaced-scaffold na na CATOQP010000004.1 = NW_028175493.1 Primary Assembly 72000 na SCAFFOLD_96 unplaced-scaffold na na CATOQP010000005.1 = NW_028175492.1 Primary Assembly 31000 na SCAFFOLD_90 unplaced-scaffold na na CATOQP010000006.1 = NW_028175491.1 Primary Assembly 39985 na SCAFFOLD_88 unplaced-scaffold na na CATOQP010000007.1 = NW_028175490.1 Primary Assembly 52000 na SCAFFOLD_103 unplaced-scaffold na na CATOQP010000008.1 = NW_028175489.1 Primary Assembly 21000 na SCAFFOLD_113 unplaced-scaffold na na CATOQP010000009.1 = NW_028175488.1 Primary Assembly 1000 na SCAFFOLD_65 unplaced-scaffold na na CATOQP010000010.1 = NW_028175487.1 Primary Assembly 147247 na SCAFFOLD_48 unplaced-scaffold na na CATOQP010000011.1 = NW_028175486.1 Primary Assembly 393463 na SCAFFOLD_89 unplaced-scaffold na na CATOQP010000012.1 = NW_028175485.1 Primary Assembly 43921 na SCAFFOLD_91 unplaced-scaffold na na CATOQP010000013.1 = NW_028175484.1 Primary Assembly 39016 na SCAFFOLD_71 unplaced-scaffold na na CATOQP010000014.1 = NW_028175483.1 Primary Assembly 85209 na SCAFFOLD_54 unplaced-scaffold na na CATOQP010000015.1 = NW_028175482.1 Primary Assembly 228000 na SCAFFOLD_85 unplaced-scaffold na na CATOQP010000016.1 = NW_028175481.1 Primary Assembly 57596 na SCAFFOLD_69 unplaced-scaffold na na CATOQP010000017.1 = NW_028175480.1 Primary Assembly 101502 na SCAFFOLD_46 unplaced-scaffold na na CATOQP010000018.1 = NW_028175479.1 Primary Assembly 420000 na SCAFFOLD_81 unplaced-scaffold na na CATOQP010000019.1 = NW_028175478.1 Primary Assembly 65935 na SCAFFOLD_95 unplaced-scaffold na na CATOQP010000020.1 = NW_028175477.1 Primary Assembly 31851 na SCAFFOLD_107 unplaced-scaffold na na CATOQP010000021.1 = NW_028175476.1 Primary Assembly 15483 na SCAFFOLD_99 unplaced-scaffold na na CATOQP010000022.1 = NW_028175475.1 Primary Assembly 25242 na SCAFFOLD_79 unplaced-scaffold na na CATOQP010000023.1 = NW_028175474.1 Primary Assembly 66404 na SCAFFOLD_61 unplaced-scaffold na na CATOQP010000024.1 = NW_028175473.1 Primary Assembly 158154 na SCAFFOLD_58 unplaced-scaffold na na CATOQP010000025.1 = NW_028175472.1 Primary Assembly 173929 na SCAFFOLD_59 unplaced-scaffold na na CATOQP010000026.1 = NW_028175471.1 Primary Assembly 172045 na SCAFFOLD_60 unplaced-scaffold na na CATOQP010000027.1 = NW_028175470.1 Primary Assembly 165359 na SCAFFOLD_78 unplaced-scaffold na na CATOQP010000028.1 = NW_028175469.1 Primary Assembly 68000 na SCAFFOLD_98 unplaced-scaffold na na CATOQP010000029.1 = NW_028175468.1 Primary Assembly 28667 na SCAFFOLD_64 unplaced-scaffold na na CATOQP010000030.1 = NW_028175467.1 Primary Assembly 148267 na SCAFFOLD_80 unplaced-scaffold na na CATOQP010000031.1 = NW_028175466.1 Primary Assembly 66000 na SCAFFOLD_84 unplaced-scaffold na na CATOQP010000032.1 = NW_028175465.1 Primary Assembly 59159 na SCAFFOLD_110 unplaced-scaffold na na CATOQP010000033.1 = NW_028175464.1 Primary Assembly 3000 na SCAFFOLD_83 unplaced-scaffold na na CATOQP010000034.1 = NW_028175463.1 Primary Assembly 64000 na SCAFFOLD_52 unplaced-scaffold na na CATOQP010000035.1 = NW_028175462.1 Primary Assembly 310000 na SCAFFOLD_106 unplaced-scaffold na na CATOQP010000036.1 = NW_028175461.1 Primary Assembly 18833 na SCAFFOLD_63 unplaced-scaffold na na CATOQP010000037.1 = NW_028175460.1 Primary Assembly 148647 na SCAFFOLD_116 unplaced-scaffold na na CATOQP010000038.1 = NW_028175459.1 Primary Assembly 1000 na SCAFFOLD_72 unplaced-scaffold na na CATOQP010000039.1 = NW_028175458.1 Primary Assembly 85008 na SCAFFOLD_92 unplaced-scaffold na na CATOQP010000040.1 = NW_028175457.1 Primary Assembly 34762 na SCAFFOLD_77 unplaced-scaffold na na CATOQP010000041.1 = NW_028175456.1 Primary Assembly 71176 na SCAFFOLD_97 unplaced-scaffold na na CATOQP010000042.1 = NW_028175455.1 Primary Assembly 28751 na SCAFFOLD_100 unplaced-scaffold na na CATOQP010000043.1 = NW_028175454.1 Primary Assembly 24055 na SCAFFOLD_87 unplaced-scaffold na na CATOQP010000044.1 = NW_028175453.1 Primary Assembly 57095 na SCAFFOLD_109 unplaced-scaffold na na CATOQP010000045.1 = NW_028175452.1 Primary Assembly 10693 na SCAFFOLD_82 unplaced-scaffold na na CATOQP010000046.1 = NW_028175451.1 Primary Assembly 65078 na SCAFFOLD_115 unplaced-scaffold na na CATOQP010000047.1 = NW_028175450.1 Primary Assembly 1000 na SCAFFOLD_67 unplaced-scaffold na na CATOQP010000048.1 = NW_028175449.1 Primary Assembly 113968 na SCAFFOLD_111 unplaced-scaffold na na CATOQP010000049.1 = NW_028175448.1 Primary Assembly 2000 na SCAFFOLD_114 unplaced-scaffold na na CATOQP010000050.1 = NW_028175447.1 Primary Assembly 1000 na SCAFFOLD_102 unplaced-scaffold na na CATOQP010000051.1 = NW_028175446.1 Primary Assembly 22772 na SCAFFOLD_112 unplaced-scaffold na na CATOQP010000052.1 = NW_028175445.1 Primary Assembly 1000 na SCAFFOLD_104 unplaced-scaffold na na CATOQP010000053.1 = NW_028175444.1 Primary Assembly 19261 na SCAFFOLD_101 unplaced-scaffold na na CATOQP010000054.1 = NW_028175443.1 Primary Assembly 23162 na SCAFFOLD_108 unplaced-scaffold na na CATOQP010000055.1 = NW_028175442.1 Primary Assembly 15000 na SCAFFOLD_105 unplaced-scaffold na na CATOQP010000056.1 = NW_028175441.1 Primary Assembly 18856 na SCAFFOLD_47 unplaced-scaffold na na CATOQP010000057.1 = NW_028175440.1 Primary Assembly 395776 na SCAFFOLD_73 unplaced-scaffold na na CATOQP010000058.1 = NW_028175439.1 Primary Assembly 82615 na SCAFFOLD_93 unplaced-scaffold na na CATOQP010000059.1 = NW_028175438.1 Primary Assembly 34105 na scaffold_MT_1 assembled-molecule MT Mitochondrion OX637958.1 <> na non-nuclear 16607 na