RepeatModeler Version 2.0.4
===========================
Using output directory = /scratch/tmp/rModeler.3oKqy0/RM_1531207.FriDec60933442024
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1733506424
Database = /scratch/tmp/rModeler.3oKqy0/GCF_963525475.1_MtbRf   - Sequences = 1
  - Bases = 4469156
Storage Throughput = excellent ( 1456.61 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 4469040 bp ( 4469040 non ambiguous )
   - Num Contigs Represented = 1
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:00:48 (hh:mm:ss) Elapsed Time
Round Time: 00:01:52 (hh:mm:ss) Elapsed Time : 8 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:07 (hh:mm:ss) Elapsed Time
 -- Masking repeats from the previous rounds...
       403 repeats masked totaling 128513 bp(s).
   - TE Masking time 00:00:02 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 4469040 bp
       Num Contigs Represented = 1
       Non ambiguous bp:
             Initial: 4469040 bp
             After Masking: 4319199 bp
             Masked: 3.35 % 
 -- Input Database Coverage: 4469040 bp out of 4469156 bp ( 100.00 % )
Sampling Time: 00:00:11 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 6216
Comparison Time: 00:05:09 (hh:mm:ss) Elapsed Time, 7806 HSPs Collected
Number of families returned by RECON: 631
Round Time: 00:09:40 (hh:mm:ss) Elapsed Time : 2 families discovered.

RepeatScout/RECON discovery complete: 10 families found


Classification Time: 00:00:38 (hh:mm:ss) Elapsed Time


Program Time: 00:12:10 (hh:mm:ss) Elapsed Time