# Assembly name: 202201000 # Organism name: Listeria rocourtiae subsp. hofi (firmicutes) # Infraspecific name: strain=CLIP 2022/01000 # Taxid: 3422320 # BioSample: SAMN29998144 # BioProject: PRJEB20026 # Submitter: Institut Pasteur # Date: 2023-10-29 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: CAUYTL01 # Assembly method: SPades # Genome coverage: 449x # Sequencing technology: Illumina # Relation to type material: assembly from type material # GenBank assembly accession: GCA_963575615.1 # RefSeq assembly accession: GCF_963575615.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_963575614.1 GCF_963575614.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name NODE_1_length_265365_cov_149.582435_pilon unplaced-scaffold na na CAUYTL010000001.1 = NZ_CAUYTL010000001.1 Primary Assembly 265365 na NODE_2_length_243639_cov_141.323708_pilon unplaced-scaffold na na CAUYTL010000002.1 = NZ_CAUYTL010000002.1 Primary Assembly 243639 na NODE_3_length_149835_cov_152.049366_pilon unplaced-scaffold na na CAUYTL010000003.1 = NZ_CAUYTL010000003.1 Primary Assembly 149835 na NODE_4_length_128486_cov_151.917638_pilon unplaced-scaffold na na CAUYTL010000004.1 = NZ_CAUYTL010000004.1 Primary Assembly 128486 na NODE_5_length_113074_cov_141.205253_pilon unplaced-scaffold na na CAUYTL010000005.1 = NZ_CAUYTL010000005.1 Primary Assembly 113074 na NODE_6_length_111051_cov_183.212563_pilon unplaced-scaffold na na CAUYTL010000006.1 = NZ_CAUYTL010000006.1 Primary Assembly 111051 na NODE_7_length_105094_cov_143.286030_pilon unplaced-scaffold na na CAUYTL010000007.1 = NZ_CAUYTL010000007.1 Primary Assembly 105094 na NODE_8_length_103048_cov_158.515106_pilon unplaced-scaffold na na CAUYTL010000008.1 = NZ_CAUYTL010000008.1 Primary Assembly 103048 na NODE_9_length_96027_cov_163.507264_pilon unplaced-scaffold na na CAUYTL010000009.1 = NZ_CAUYTL010000009.1 Primary Assembly 96027 na NODE_10_length_94799_cov_145.806096_pilon unplaced-scaffold na na CAUYTL010000010.1 = NZ_CAUYTL010000010.1 Primary Assembly 94799 na NODE_11_length_79357_cov_157.620888_pilon unplaced-scaffold na na CAUYTL010000011.1 = NZ_CAUYTL010000011.1 Primary Assembly 79357 na NODE_12_length_73402_cov_145.580157_pilon unplaced-scaffold na na CAUYTL010000012.1 = NZ_CAUYTL010000012.1 Primary Assembly 73402 na NODE_13_length_67168_cov_150.289949_pilon unplaced-scaffold na na CAUYTL010000013.1 = NZ_CAUYTL010000013.1 Primary Assembly 67168 na NODE_14_length_65978_cov_173.462512_pilon unplaced-scaffold na na CAUYTL010000014.1 = NZ_CAUYTL010000014.1 Primary Assembly 65978 na NODE_15_length_63087_cov_143.054229_pilon unplaced-scaffold na na CAUYTL010000015.1 = NZ_CAUYTL010000015.1 Primary Assembly 63087 na NODE_16_length_62525_cov_128.663048_pilon unplaced-scaffold na na CAUYTL010000016.1 = NZ_CAUYTL010000016.1 Primary Assembly 62525 na NODE_17_length_61970_cov_156.042929_pilon unplaced-scaffold na na CAUYTL010000017.1 = NZ_CAUYTL010000017.1 Primary Assembly 61970 na NODE_18_length_60697_cov_145.718690_pilon unplaced-scaffold na na CAUYTL010000018.1 = NZ_CAUYTL010000018.1 Primary Assembly 60697 na NODE_19_length_60550_cov_153.943876_pilon unplaced-scaffold na na CAUYTL010000019.1 = NZ_CAUYTL010000019.1 Primary Assembly 60550 na NODE_20_length_56555_cov_171.184868_pilon unplaced-scaffold na na CAUYTL010000020.1 = NZ_CAUYTL010000020.1 Primary Assembly 56555 na NODE_21_length_53492_cov_157.925620_pilon unplaced-scaffold na na CAUYTL010000021.1 = NZ_CAUYTL010000021.1 Primary Assembly 53492 na NODE_22_length_52667_cov_128.760715_pilon unplaced-scaffold na na CAUYTL010000022.1 = NZ_CAUYTL010000022.1 Primary Assembly 52667 na NODE_23_length_52284_cov_148.964296_pilon unplaced-scaffold na na CAUYTL010000023.1 = NZ_CAUYTL010000023.1 Primary Assembly 52284 na NODE_24_length_51618_cov_165.758988_pilon unplaced-scaffold na na CAUYTL010000024.1 = NZ_CAUYTL010000024.1 Primary Assembly 51618 na NODE_25_length_50984_cov_199.215236_pilon unplaced-scaffold na na CAUYTL010000025.1 = NZ_CAUYTL010000025.1 Primary Assembly 50984 na NODE_26_length_50901_cov_155.105246_pilon unplaced-scaffold na na CAUYTL010000026.1 = NZ_CAUYTL010000026.1 Primary Assembly 50901 na NODE_27_length_47471_cov_136.643837_pilon unplaced-scaffold na na CAUYTL010000027.1 = NZ_CAUYTL010000027.1 Primary Assembly 47471 na NODE_28_length_46656_cov_201.009146_pilon unplaced-scaffold na na CAUYTL010000028.1 = NZ_CAUYTL010000028.1 Primary Assembly 46656 na NODE_29_length_44486_cov_167.693395_pilon unplaced-scaffold na na CAUYTL010000029.1 = NZ_CAUYTL010000029.1 Primary Assembly 44486 na NODE_30_length_39320_cov_134.145351_pilon unplaced-scaffold na na CAUYTL010000030.1 = NZ_CAUYTL010000030.1 Primary Assembly 39320 na NODE_31_length_35795_cov_152.897699_pilon unplaced-scaffold na na CAUYTL010000031.1 = NZ_CAUYTL010000031.1 Primary Assembly 35795 na NODE_32_length_34504_cov_196.605833_pilon unplaced-scaffold na na CAUYTL010000032.1 = NZ_CAUYTL010000032.1 Primary Assembly 34504 na NODE_33_length_34000_cov_168.884120_pilon unplaced-scaffold na na CAUYTL010000033.1 = NZ_CAUYTL010000033.1 Primary Assembly 34000 na NODE_34_length_31072_cov_168.459332_pilon unplaced-scaffold na na CAUYTL010000034.1 = NZ_CAUYTL010000034.1 Primary Assembly 31072 na NODE_35_length_30226_cov_179.904375_pilon unplaced-scaffold na na CAUYTL010000035.1 = NZ_CAUYTL010000035.1 Primary Assembly 30226 na NODE_36_length_30204_cov_150.710857_pilon unplaced-scaffold na na CAUYTL010000036.1 = NZ_CAUYTL010000036.1 Primary Assembly 30204 na NODE_37_length_29976_cov_109.482023_pilon unplaced-scaffold na na CAUYTL010000037.1 = NZ_CAUYTL010000037.1 Primary Assembly 29976 na NODE_38_length_28246_cov_127.324612_pilon unplaced-scaffold na na CAUYTL010000038.1 = NZ_CAUYTL010000038.1 Primary Assembly 28246 na NODE_39_length_27729_cov_111.294481_pilon unplaced-scaffold na na CAUYTL010000039.1 = NZ_CAUYTL010000039.1 Primary Assembly 27729 na NODE_40_length_27142_cov_145.420063_pilon unplaced-scaffold na na CAUYTL010000040.1 = NZ_CAUYTL010000040.1 Primary Assembly 27142 na NODE_41_length_26002_cov_120.468004_pilon unplaced-scaffold na na CAUYTL010000041.1 = NZ_CAUYTL010000041.1 Primary Assembly 26002 na NODE_42_length_24525_cov_181.984743_pilon unplaced-scaffold na na CAUYTL010000042.1 = NZ_CAUYTL010000042.1 Primary Assembly 24525 na NODE_43_length_23635_cov_112.647848_pilon unplaced-scaffold na na CAUYTL010000043.1 = NZ_CAUYTL010000043.1 Primary Assembly 23635 na NODE_44_length_19711_cov_133.844657_pilon unplaced-scaffold na na CAUYTL010000044.1 = NZ_CAUYTL010000044.1 Primary Assembly 19711 na NODE_45_length_18658_cov_178.856359_pilon unplaced-scaffold na na CAUYTL010000045.1 = NZ_CAUYTL010000045.1 Primary Assembly 18658 na NODE_46_length_17245_cov_168.883213_pilon unplaced-scaffold na na CAUYTL010000046.1 = NZ_CAUYTL010000046.1 Primary Assembly 17245 na NODE_47_length_16942_cov_116.030003_pilon unplaced-scaffold na na CAUYTL010000047.1 = NZ_CAUYTL010000047.1 Primary Assembly 16942 na NODE_48_length_16869_cov_182.093735_pilon unplaced-scaffold na na CAUYTL010000048.1 = NZ_CAUYTL010000048.1 Primary Assembly 16869 na NODE_49_length_16565_cov_114.414787_pilon unplaced-scaffold na na CAUYTL010000049.1 = NZ_CAUYTL010000049.1 Primary Assembly 16565 na NODE_50_length_15154_cov_149.371692_pilon unplaced-scaffold na na CAUYTL010000050.1 = NZ_CAUYTL010000050.1 Primary Assembly 15154 na NODE_51_length_13985_cov_111.854760_pilon unplaced-scaffold na na CAUYTL010000051.1 = NZ_CAUYTL010000051.1 Primary Assembly 13985 na NODE_52_length_13235_cov_164.259234_pilon unplaced-scaffold na na CAUYTL010000052.1 = NZ_CAUYTL010000052.1 Primary Assembly 13235 na NODE_53_length_12254_cov_169.805699_pilon unplaced-scaffold na na CAUYTL010000053.1 = NZ_CAUYTL010000053.1 Primary Assembly 12254 na NODE_54_length_11642_cov_131.582793_pilon unplaced-scaffold na na CAUYTL010000054.1 = NZ_CAUYTL010000054.1 Primary Assembly 11642 na NODE_55_length_10757_cov_118.352154_pilon unplaced-scaffold na na CAUYTL010000055.1 = NZ_CAUYTL010000055.1 Primary Assembly 10757 na NODE_56_length_10338_cov_133.256603_pilon unplaced-scaffold na na CAUYTL010000056.1 = NZ_CAUYTL010000056.1 Primary Assembly 10338 na NODE_57_length_9783_cov_137.237894_pilon unplaced-scaffold na na CAUYTL010000057.1 = NZ_CAUYTL010000057.1 Primary Assembly 9783 na NODE_58_length_9476_cov_104.297691_pilon unplaced-scaffold na na CAUYTL010000058.1 = NZ_CAUYTL010000058.1 Primary Assembly 9476 na NODE_59_length_9450_cov_117.599552_pilon unplaced-scaffold na na CAUYTL010000059.1 = NZ_CAUYTL010000059.1 Primary Assembly 9450 na NODE_60_length_8932_cov_186.912479_pilon unplaced-scaffold na na CAUYTL010000060.1 = NZ_CAUYTL010000060.1 Primary Assembly 8932 na NODE_61_length_8027_cov_126.635472_pilon unplaced-scaffold na na CAUYTL010000061.1 = NZ_CAUYTL010000061.1 Primary Assembly 8027 na NODE_62_length_7787_cov_66.242023_pilon unplaced-scaffold na na CAUYTL010000062.1 = NZ_CAUYTL010000062.1 Primary Assembly 7787 na NODE_63_length_7341_cov_135.429928_pilon unplaced-scaffold na na CAUYTL010000063.1 = NZ_CAUYTL010000063.1 Primary Assembly 7341 na NODE_64_length_7011_cov_125.029853_pilon unplaced-scaffold na na CAUYTL010000064.1 = NZ_CAUYTL010000064.1 Primary Assembly 7011 na NODE_65_length_6386_cov_92.186601_pilon unplaced-scaffold na na CAUYTL010000065.1 = NZ_CAUYTL010000065.1 Primary Assembly 6386 na NODE_66_length_6383_cov_151.534729_pilon unplaced-scaffold na na CAUYTL010000066.1 = NZ_CAUYTL010000066.1 Primary Assembly 6383 na NODE_67_length_5953_cov_88.872703_pilon unplaced-scaffold na na CAUYTL010000067.1 = NZ_CAUYTL010000067.1 Primary Assembly 5953 na NODE_68_length_5740_cov_221.814586_pilon unplaced-scaffold na na CAUYTL010000068.1 = NZ_CAUYTL010000068.1 Primary Assembly 5740 na NODE_69_length_5615_cov_109.625135_pilon unplaced-scaffold na na CAUYTL010000069.1 = NZ_CAUYTL010000069.1 Primary Assembly 5615 na NODE_70_length_4392_cov_188.161298_pilon unplaced-scaffold na na CAUYTL010000070.1 = NZ_CAUYTL010000070.1 Primary Assembly 4392 na NODE_71_length_4320_cov_122.204572_pilon unplaced-scaffold na na CAUYTL010000071.1 = NZ_CAUYTL010000071.1 Primary Assembly 4320 na NODE_72_length_3963_cov_211.975553_pilon unplaced-scaffold na na CAUYTL010000072.1 = NZ_CAUYTL010000072.1 Primary Assembly 3963 na NODE_73_length_2716_cov_195.561955_pilon unplaced-scaffold na na CAUYTL010000073.1 = NZ_CAUYTL010000073.1 Primary Assembly 2716 na NODE_74_length_2338_cov_150.647943_pilon unplaced-scaffold na na CAUYTL010000074.1 = NZ_CAUYTL010000074.1 Primary Assembly 2338 na NODE_75_length_2181_cov_142.314163_pilon unplaced-scaffold na na CAUYTL010000075.1 = NZ_CAUYTL010000075.1 Primary Assembly 2181 na NODE_76_length_1766_cov_1640.925400_pilon unplaced-scaffold na na CAUYTL010000076.1 = NZ_CAUYTL010000076.1 Primary Assembly 1766 na NODE_77_length_1740_cov_267.838244_pilon unplaced-scaffold na na CAUYTL010000077.1 = NZ_CAUYTL010000077.1 Primary Assembly 1740 na NODE_78_length_1725_cov_120.558252_pilon unplaced-scaffold na na CAUYTL010000078.1 = NZ_CAUYTL010000078.1 Primary Assembly 1725 na NODE_79_length_1718_cov_177.450945_pilon unplaced-scaffold na na CAUYTL010000079.1 = NZ_CAUYTL010000079.1 Primary Assembly 1718 na NODE_80_length_1643_cov_167.280971_pilon unplaced-scaffold na na CAUYTL010000080.1 = NZ_CAUYTL010000080.1 Primary Assembly 1643 na NODE_81_length_1625_cov_1796.678295_pilon unplaced-scaffold na na CAUYTL010000081.1 = NZ_CAUYTL010000081.1 Primary Assembly 1625 na NODE_82_length_1475_cov_478.185980_pilon unplaced-scaffold na na CAUYTL010000082.1 = NZ_CAUYTL010000082.1 Primary Assembly 1475 na NODE_83_length_1462_cov_294.960289_pilon unplaced-scaffold na na CAUYTL010000083.1 = NZ_CAUYTL010000083.1 Primary Assembly 1462 na NODE_84_length_1359_cov_62.371295_pilon unplaced-scaffold na na CAUYTL010000084.1 = NZ_CAUYTL010000084.1 Primary Assembly 1359 na NODE_85_length_1345_cov_2013.693218_pilon unplaced-scaffold na na CAUYTL010000085.1 = NZ_CAUYTL010000085.1 Primary Assembly 1345 na NODE_86_length_1141_cov_949.957707_pilon unplaced-scaffold na na CAUYTL010000086.1 = NZ_CAUYTL010000086.1 Primary Assembly 1141 na NODE_87_length_1046_cov_382.444788_pilon unplaced-scaffold na na CAUYTL010000087.1 = NZ_CAUYTL010000087.1 Primary Assembly 1046 na NODE_88_length_852_cov_558.206452_pilon unplaced-scaffold na na CAUYTL010000088.1 = NZ_CAUYTL010000088.1 Primary Assembly 852 na NODE_89_length_850_cov_2914.677878_pilon unplaced-scaffold na na CAUYTL010000089.1 = NZ_CAUYTL010000089.1 Primary Assembly 850 na NODE_90_length_794_cov_3077.986053_pilon unplaced-scaffold na na CAUYTL010000090.1 = NZ_CAUYTL010000090.1 Primary Assembly 794 na NODE_91_length_737_cov_444.227273_pilon unplaced-scaffold na na CAUYTL010000091.1 = NZ_CAUYTL010000091.1 Primary Assembly 737 na NODE_92_length_593_cov_1720.277132_pilon unplaced-scaffold na na CAUYTL010000092.1 = NZ_CAUYTL010000092.1 Primary Assembly 593 na NODE_93_length_571_cov_2557.714575_pilon unplaced-scaffold na na CAUYTL010000093.1 = NZ_CAUYTL010000093.1 Primary Assembly 571 na NODE_94_length_538_cov_5420.173536_pilon unplaced-scaffold na na CAUYTL010000094.1 = NZ_CAUYTL010000094.1 Primary Assembly 538 na NODE_95_length_516_cov_2465.389522_pilon unplaced-scaffold na na CAUYTL010000095.1 = NZ_CAUYTL010000095.1 Primary Assembly 516 na NODE_96_length_464_cov_0.775194_pilon unplaced-scaffold na na CAUYTL010000096.1 = NZ_CAUYTL010000096.1 Primary Assembly 464 na NODE_97_length_401_cov_1.293210_pilon unplaced-scaffold na na CAUYTL010000097.1 = NZ_CAUYTL010000097.1 Primary Assembly 401 na NODE_98_length_380_cov_307.280528_pilon unplaced-scaffold na na CAUYTL010000098.1 = NZ_CAUYTL010000098.1 Primary Assembly 380 na NODE_99_length_377_cov_6391.060000_pilon unplaced-scaffold na na CAUYTL010000099.1 = NZ_CAUYTL010000099.1 Primary Assembly 377 na NODE_100_length_370_cov_256.184300_pilon unplaced-scaffold na na CAUYTL010000100.1 = NZ_CAUYTL010000100.1 Primary Assembly 370 na NODE_101_length_358_cov_383.725979_pilon unplaced-scaffold na na CAUYTL010000101.1 = NZ_CAUYTL010000101.1 Primary Assembly 358 na NODE_102_length_354_cov_4304.361011_pilon unplaced-scaffold na na CAUYTL010000102.1 = NZ_CAUYTL010000102.1 Primary Assembly 354 na NODE_103_length_352_cov_140.461818_pilon unplaced-scaffold na na CAUYTL010000103.1 = NZ_CAUYTL010000103.1 Primary Assembly 352 na NODE_104_length_345_cov_0.996269_pilon unplaced-scaffold na na CAUYTL010000104.1 = NZ_CAUYTL010000104.1 Primary Assembly 345 na NODE_105_length_344_cov_1.014981_pilon unplaced-scaffold na na CAUYTL010000105.1 = NZ_CAUYTL010000105.1 Primary Assembly 344 na NODE_106_length_332_cov_0.764706_pilon unplaced-scaffold na na CAUYTL010000106.1 = NZ_CAUYTL010000106.1 Primary Assembly 332 na NODE_107_length_329_cov_0.730159_pilon unplaced-scaffold na na CAUYTL010000107.1 = NZ_CAUYTL010000107.1 Primary Assembly 329 na NODE_109_length_327_cov_0.788000_pilon unplaced-scaffold na na CAUYTL010000108.1 = NZ_CAUYTL010000108.1 Primary Assembly 327 na NODE_108_length_327_cov_0.848000_pilon unplaced-scaffold na na CAUYTL010000109.1 = NZ_CAUYTL010000109.1 Primary Assembly 327 na NODE_110_length_317_cov_2.179167_pilon unplaced-scaffold na na CAUYTL010000110.1 = NZ_CAUYTL010000110.1 Primary Assembly 317 na NODE_111_length_317_cov_0.758333_pilon unplaced-scaffold na na CAUYTL010000111.1 = NZ_CAUYTL010000111.1 Primary Assembly 317 na NODE_112_length_316_cov_0.845188_pilon unplaced-scaffold na na CAUYTL010000112.1 = NZ_CAUYTL010000112.1 Primary Assembly 316 na NODE_114_length_313_cov_0.758475_pilon unplaced-scaffold na na CAUYTL010000113.1 = NZ_CAUYTL010000113.1 Primary Assembly 313 na NODE_113_length_313_cov_1.042373_pilon unplaced-scaffold na na CAUYTL010000114.1 = NZ_CAUYTL010000114.1 Primary Assembly 313 na NODE_115_length_312_cov_1.400000_pilon unplaced-scaffold na na CAUYTL010000115.1 = NZ_CAUYTL010000115.1 Primary Assembly 312 na NODE_116_length_311_cov_0.777778_pilon unplaced-scaffold na na CAUYTL010000116.1 = NZ_CAUYTL010000116.1 Primary Assembly 311 na NODE_117_length_310_cov_0.763948_pilon unplaced-scaffold na na CAUYTL010000117.1 = NZ_CAUYTL010000117.1 Primary Assembly 310 na NODE_118_length_307_cov_0.926087_pilon unplaced-scaffold na na CAUYTL010000118.1 = NZ_CAUYTL010000118.1 Primary Assembly 307 na NODE_119_length_305_cov_1.372807_pilon unplaced-scaffold na na CAUYTL010000119.1 = NZ_CAUYTL010000119.1 Primary Assembly 305 na NODE_120_length_305_cov_0.960526_pilon unplaced-scaffold na na CAUYTL010000120.1 = NZ_CAUYTL010000120.1 Primary Assembly 305 na NODE_121_length_304_cov_1.039648_pilon unplaced-scaffold na na CAUYTL010000121.1 = NZ_CAUYTL010000121.1 Primary Assembly 304 na NODE_122_length_303_cov_0.615044_pilon unplaced-scaffold na na CAUYTL010000122.1 = NZ_CAUYTL010000122.1 Primary Assembly 303 na NODE_124_length_300_cov_0.798206_pilon unplaced-scaffold na na CAUYTL010000123.1 = NZ_CAUYTL010000123.1 Primary Assembly 300 na NODE_123_length_300_cov_0.932735_pilon unplaced-scaffold na na CAUYTL010000124.1 = NZ_CAUYTL010000124.1 Primary Assembly 300 na