#Partially deleted in new
chr10	27516492	27522600	+
#Partially deleted in new
chr10	30245131	30251275	-
#Deleted in new
chr10	33669913	33676046	+
#Partially deleted in new
chr10	48842346	48847814	+
#Deleted in new
chr10	51361074	51366191	+
#Deleted in new
chr10	84778099	84784242	-
#Deleted in new
chr10	104636039	104641471	+
#Partially deleted in new
chr11	9337394	9342754	-
#Deleted in new
chr11	24506639	24512800	+
#Deleted in new
chr11	39629977	39636120	-
#Partially deleted in new
chr11	61634809	61640227	+
#Deleted in new
chr11	64208858	64214975	+
#Partially deleted in new
chr11	66419625	66425764	-
#Deleted in new
chr11	67172461	67178601	+
#Partially deleted in new
chr11	71596732	71602852	+
#Partially deleted in new
chr11	81999755	82005911	-
#Deleted in new
chr11	86176728	86182500	-
#Deleted in new
chr11	86806563	86812697	-
#Partially deleted in new
chr11	109933569	109939554	+
#Deleted in new
chr11	112058537	112064430	-
#Deleted in new
chr11_GL397842_1_random	22020	29480	+
#Deleted in new
chr12	7623281	7629441	-
#Partially deleted in new
chr12	9762557	9768655	-
#Deleted in new
chr12	24400781	24406760	-
#Deleted in new
chr12	24435397	24441413	+
#Deleted in new
chr12	28262979	28269109	+
#Deleted in new
chr12	29392748	29398886	+
#Deleted in new
chr12	30759251	30765192	+
#Deleted in new
chr12	37994798	38000000	-
#Deleted in new
chr12	49397136	49402759	+
#Deleted in new
chr12	49628875	49635021	-
#Deleted in new
chr12	50408516	50414682	-
#Deleted in new
chr12	58137303	58143287	-
#Partially deleted in new
chr12	62913439	62919226	+
#Deleted in new
chr12	72805007	72811137	+
#Deleted in new
chr12	80670055	80676114	-
#Partially deleted in new
chr12	99787900	99793282	-
#Deleted in new
chr12	99797773	99803897	-
#Deleted in new
chr12	101445078	101450913	+
#Deleted in new
chr13	37211244	37216247	+
#Partially deleted in new
chr13	52468772	52474915	-
#Deleted in new
chr13	54060318	54066477	-
#Deleted in new
chr13	55501056	55507198	-
#Deleted in new
chr13	57335549	57341466	+
#Deleted in new
chr13	61196074	61202210	+
#Deleted in new
chr13	94532533	94538684	+
#Deleted in new
chr13	95693163	95699359	+
#Deleted in new
chr13	104730095	104736247	-
#Partially deleted in new
chr13	107081702	107087855	+
#Deleted in new
chr13_GL397738_2_random	12667	18786	+
#Partially deleted in new
chr14	6561733	6567877	-
#Deleted in new
chr14	19696084	19702234	-
#Deleted in new
chr14	24568421	24574504	-
#Deleted in new
chr14	30911929	30917447	-
#Partially deleted in new
chr14	43686827	43692065	-
#Deleted in new
chr15	5380109	5386229	-
#Partially deleted in new
chr15	7794171	7800045	+
#Deleted in new
chr15	21724562	21730714	-
#Deleted in new
chr15	22040584	22046723	+
#Deleted in new
chr15	28712882	28719015	-
#Deleted in new
chr15	32064105	32070080	-
#Deleted in new
chr15	48817016	48823012	-
#Deleted in new
chr15	49117343	49123289	-
#Deleted in new
chr15	56855100	56861248	-
#Partially deleted in new
chr15	63425075	63431207	-
#Deleted in new
chr15	64661462	64667602	+
#Deleted in new
chr15	67657808	67663974	+
#Deleted in new
chr15	67765302	67770874	+
#Deleted in new
chr15	67924545	67930690	+
#Deleted in new
chr15	73565804	73571424	-
#Partially deleted in new
chr15	75876205	75882425	-
#Deleted in new
chr15	83573372	83579522	+
#Deleted in new
chr15	89743142	89748294	-
#Deleted in new
chr15	89972137	89978274	-
#Deleted in new
chr15	95470576	95476908	-
#Deleted in new
chr16	6660656	6666684	-
#Partially deleted in new
chr16	9664532	9669800	+
#Deleted in new
chr16	11372704	11378840	-
#Deleted in new
chr16	18232894	18239047	-
#Deleted in new
chr16	32506367	32512518	+
#Deleted in new
chr16	32537620	32543613	-
#Deleted in new
chr16	34642570	34648536	-
#Partially deleted in new
chr16	37765131	37771294	-
#Deleted in new
chr16	37783178	37789186	+
#Partially deleted in new
chr16	39707174	39713071	+
#Partially deleted in new
chr16	43656066	43662234	-
#Deleted in new
chr16	45874670	45880793	-
#Partially deleted in new
chr16	46014470	46020623	-
#Deleted in new
chr16	52730242	52736299	+
#Deleted in new
chr16	53850935	53856337	-
#Deleted in new
chr16	53948476	53953861	+
#Deleted in new
chr16	60478194	60484152	-
#Deleted in new
chr16	67391299	67397457	+
#Deleted in new
chr16	75101861	75107974	-
#Deleted in new
chr16	82461475	82467604	+
#Deleted in new
chr16_GL398688_1_random	1732	7560	+
#Deleted in new
chr17	11050128	11056285	+
#Deleted in new
chr17	11088173	11094318	+
#Partially deleted in new
chr17	11376078	11382238	-
#Deleted in new
chr17	14823659	14829822	-
#Deleted in new
chr17	20916362	20922521	-
#Deleted in new
chr17	23120496	23126341	-
#Deleted in new
chr17	41299301	41305755	-
#Deleted in new
chr17	50979543	50985813	-
#Deleted in new
chr17	54353028	54359117	-
#Deleted in new
chr17	57388323	57394476	+
#Partially deleted in new
chr17	57433010	57438983	+
#Partially deleted in new
chr17	59407790	59413343	-
#Partially deleted in new
chr17	67606004	67612099	+
#Deleted in new
chr17	72988069	72994207	+
#Partially deleted in new
chr17	84447631	84452857	+
#Deleted in new
chr17	85102603	85108177	+
#Deleted in new
chr17	89393788	89399596	-
#Deleted in new
chr17_GL400150_1_random	2	5525	+
#Deleted in new
chr18	1351319	1357542	+
#Deleted in new
chr18	11400242	11406234	-
#Deleted in new
chr18	22452619	22458678	-
#Deleted in new
chr18	25453411	25459558	-
#Deleted in new
chr18	31714241	31720389	-
#Deleted in new
chr18	38157497	38163620	+
#Deleted in new
chr18	42959634	42965621	-
#Deleted in new
chr18	50407556	50413678	+
#Partially deleted in new
chr18	55785144	55791235	+
#Deleted in new
chr18	65604118	65609931	-
#Deleted in new
chr18	70272228	70278386	-
#Deleted in new
chr18	73155153	73161265	-
#Partially deleted in new
chr18	85148456	85154583	+
#Partially deleted in new
chr18	86357393	86363548	-
#Deleted in new
chr19	17782825	17788695	-
#Deleted in new
chr19	29513986	29520128	+
#Deleted in new
chr19	29626374	29632405	+
#Deleted in new
chr19	29668657	29674628	+
#Deleted in new
chr19	48805462	48811613	-
#Deleted in new
chr19	68022440	68028372	-
#Deleted in new
chr19_GL397538_1_random	160987	166940	+
#Deleted in new
chr1a	10254442	10260274	-
#Deleted in new
chr1a	68978700	68984641	+
#Deleted in new
chr1a	69304052	69310165	-
#Partially deleted in new
chr1a	89706663	89713075	+
#Deleted in new
chr1a	91122291	91128090	-
#Deleted in new
chr1a	92887776	92893781	-
#Deleted in new
chr1a	119977857	119983992	+
#Partially deleted in new
chr2	20485121	20491274	+
#Deleted in new
chr2	21455392	21460671	+
#Deleted in new
chr2	24502948	24508858	+
#Deleted in new
chr2	30037955	30044103	+
#Deleted in new
chr2	40375214	40381139	+
#Deleted in new
chr2	44970652	44976522	-
#Partially deleted in new
chr2	57958349	57964448	-
#Partially deleted in new
chr2	74758702	74764850	-
#Deleted in new
chr2	85934538	85940640	+
#Deleted in new
chr2	113525956	113532066	-
#Deleted in new
chr2	129663127	129669210	+
#Deleted in new
chr2	131258420	131264457	-
#Deleted in new
chr2	144698941	144705090	-
#Deleted in new
chr2	145586343	145592376	-
#Deleted in new
chr2	159817624	159823748	+
#Partially deleted in new
chr20	6944362	6950502	+
#Deleted in new
chr20	43212664	43218811	+
#Deleted in new
chr20	44642922	44649112	-
#Deleted in new
chr20	51420891	51425969	-
#Partially deleted in new
chr21	7766768	7772901	+
#Partially deleted in new
chr21	8141691	8147821	-
#Deleted in new
chr21	8302354	8308496	-
#Deleted in new
chr21	15405519	15411670	+
#Deleted in new
chr21	22723087	22729418	+
#Deleted in new
chr21	27118593	27124115	+
#Deleted in new
chr21	29873200	29879259	-
#Partially deleted in new
chr21	30415337	30421471	-
#Deleted in new
chr21	37029971	37036031	+
#Deleted in new
chr21	38121116	38126985	-
#Deleted in new
chr21	41895289	41901431	+
#Deleted in new
chr21	47024637	47030595	-
#Deleted in new
chr21	60541817	60548163	+
#Deleted in new
chr21	61630837	61636962	-
#Deleted in new
chr21	78963810	78968929	-
#Deleted in new
chr22a	10298539	10304678	-
#Partially deleted in new
chr22a	17808340	17813910	+
#Deleted in new
chr22a	18207119	18212233	-
#Deleted in new
chr22a	19787403	19793544	-
#Partially deleted in new
chr22a	46355182	46361036	-
#Deleted in new
chr22a	48857314	48863326	+
#Deleted in new
chr22a	61404717	61410629	+
#Deleted in new
chr22a	66908949	66913970	+
#Partially deleted in new
chr22a	88669990	88676214	+
#Partially deleted in new
chr22a	92743977	92750135	+
#Partially deleted in new
chr22a	97890908	97896830	+
#Deleted in new
chr22a	119175312	119180525	-
#Partially deleted in new
chr23	5369316	5374724	+
#Deleted in new
chr23	22440619	22446657	+
#Deleted in new
chr25	4290399	4296443	+
#Deleted in new
chr25	13625194	13631302	-
#Partially deleted in new
chr25	16154846	16160961	+
#Partially deleted in new
chr25_ADFV01134967_1_random	0	5868	-
#Deleted in new
chr3	18538854	18545013	+
#Deleted in new
chr3	40439313	40445370	-
#Deleted in new
chr3	45620578	45626714	-
#Deleted in new
chr3	48148862	48154095	+
#Deleted in new
chr3	66731972	66737122	-
#Deleted in new
chr3	70844785	70850678	+
#Deleted in new
chr3	73073029	73079175	-
#Deleted in new
chr3	73134856	73140717	-
#Deleted in new
chr3	79792421	79798571	+
#Deleted in new
chr3	83848788	83854834	+
#Deleted in new
chr3	90670022	90675402	+
#Deleted in new
chr3	90699049	90704833	+
#Deleted in new
chr3	99659862	99665821	+
#Deleted in new
chr3	100265686	100271829	+
#Partially deleted in new
chr3	107535092	107541233	-
#Partially deleted in new
chr3	107579240	107585372	-
#Deleted in new
chr3	109640925	109646992	+
#Partially deleted in new
chr3	111920947	111927124	-
#Partially deleted in new
chr3	123153724	123159896	+
#Deleted in new
chr3	125427793	125433915	-
#Deleted in new
chr3	136609343	136615385	-
#Deleted in new
chr4	11108127	11114224	-
#Deleted in new
chr4	13561535	13567492	-
#Deleted in new
chr4	30523052	30528366	+
#Deleted in new
chr4	59797606	59803629	+
#Partially deleted in new
chr4	72781493	72787629	-
#Deleted in new
chr4	76289968	76296106	+
#Partially deleted in new
chr4	76990103	76996428	-
#Partially deleted in new
chr4	83716153	83722251	-
#Deleted in new
chr4	96018623	96024660	+
#Partially deleted in new
chr4	110900687	110906827	-
#Deleted in new
chr4	112621841	112627987	+
#Deleted in new
chr4	129163988	129170085	-
#Deleted in new
chr4_GL397525_2_random	308938	315056	+
#Deleted in new
chr4_GL397525_2_random	613032	619144	+
#Deleted in new
chr4_GL397755_2_random	50475	56590	+
#Deleted in new
chr5	10716780	10722929	-
#Deleted in new
chr5	23277052	23283041	+
#Deleted in new
chr5	46641476	46647098	-
#Partially deleted in new
chr5	69354715	69360737	+
#Partially deleted in new
chr5	104377283	104382363	+
#Deleted in new
chr5	130428357	130434503	+
#Deleted in new
chr5	135417761	135423909	-
#Deleted in new
chr6	10162745	10168893	-
#Deleted in new
chr6	41211175	41216955	-
#Deleted in new
chr6	72877474	72883442	+
#Partially deleted in new
chr6	105271071	105276974	-
#Deleted in new
chr6	116705815	116711501	+
#Deleted in new
chr7b	40319920	40326067	-
#Deleted in new
chr7b	43379220	43385267	-
#Deleted in new
chr7b	43666263	43672366	+
#Partially deleted in new
chr7b	48108737	48114868	+
#Deleted in new
chr7b	66100125	66106260	-
#Deleted in new
chr7b	67874602	67880436	+
#Deleted in new
chr7b	67883833	67889977	+
#Deleted in new
chr7b	70336163	70342288	-
#Deleted in new
chr7b	70408934	70414930	+
#Deleted in new
chr7b	78150186	78156310	-
#Deleted in new
chr7b	84421223	84427314	-
#Deleted in new
chr8	5041656	5047829	-
#Deleted in new
chr8	5484766	5490894	+
#Partially deleted in new
chr8	11829256	11835381	+
#Deleted in new
chr8	13676284	13681652	-
#Deleted in new
chr8	15372874	15378910	-
#Partially deleted in new
chr8	17345837	17351862	+
#Partially deleted in new
chr8	19920257	19925797	+
#Partially deleted in new
chr8	20090599	20096744	+
#Deleted in new
chr8	20812037	20818187	+
#Partially deleted in new
chr8	38760576	38766724	+
#Deleted in new
chr8	41555339	41561187	+
#Deleted in new
chr8	44983794	44989670	-
#Deleted in new
chr8	49186072	49191908	-
#Partially deleted in new
chr8	61697915	61704320	+
#Deleted in new
chr8	66970778	66976297	+
#Partially deleted in new
chr8	69832569	69838691	-
#Deleted in new
chr8	87051579	87057725	-
#Deleted in new
chr8	88848359	88853809	-
#Deleted in new
chr8	90089950	90095797	+
#Deleted in new
chr8	95313593	95319727	+
#Partially deleted in new
chr9	10082844	10088990	+
#Deleted in new
chr9	34657812	34664006	+
#Deleted in new
chr9	38762757	38768903	-
#Deleted in new
chr9	51298515	51304707	-
#Partially deleted in new
chr9	52660535	52666693	+
#Partially deleted in new
chr9	55962211	55968279	-
#Partially deleted in new
chr9	59707893	59714050	-
#Partially deleted in new
chr9	62492231	62498191	-
#Deleted in new
chr9	62850709	62856640	-
#Deleted in new
chr9	70071291	70077444	+
#Deleted in new
chr9	85817266	85823268	-
#Deleted in new
chr9	97316769	97322920	-
#Deleted in new
chr9	97361950	97368088	-
#Partially deleted in new
chr9	108760248	108766322	+
#Deleted in new
chr9	111807333	111812733	-
#Deleted in new
chr9	113156425	113162542	-
#Deleted in new
chr9	113206851	113212943	+
#Deleted in new
chr9_ADFV01136122_1_random	12435	18533	-
#Partially deleted in new
chrUn_ADFV01136197_1	23546	28918	-
#Partially deleted in new
chrUn_ADFV01140284_1	4314	10155	+
#Deleted in new
chrUn_ADFV01141961_1	2673	8309	+
#Deleted in new
chrUn_ADFV01141990_1	2048	8021	+
#Deleted in new
chrUn_ADFV01142732_1	25	5841	-
#Deleted in new
chrUn_ADFV01143670_1	332	6483	+
#Deleted in new
chrUn_ADFV01144810_1	672	6260	+
#Deleted in new
chrUn_ADFV01147144_1	110	5177	+
#Deleted in new
chrUn_ADFV01147838_1	0	5023	+
#Deleted in new
chrUn_GL397432_1	657621	663754	+
#Deleted in new
chrUn_GL397550_1	8145	14148	-
#Deleted in new
chrUn_GL397550_1	268151	274283	-
#Deleted in new
chrUn_GL397550_1	407943	414081	-
#Deleted in new
chrUn_GL397550_1	616354	622424	-
#Deleted in new
chrUn_GL397602_1	45751	52045	-
#Deleted in new
chrUn_GL397626_1	198369	204475	-
#Deleted in new
chrUn_GL397684_1	35439	41445	+
#Deleted in new
chrUn_GL397719_1	47889	53728	-
#Deleted in new
chrUn_GL397726_1	483	6710	-
#Partially deleted in new
chrUn_GL397928_1	37209	43252	+
#Deleted in new
chrUn_GL397996_1	5518	11028	-
#Partially deleted in new
chrUn_GL398198_1	370	6313	-
#Deleted in new
chrUn_GL398747_1	4255	10160	+
#Deleted in new
chrUn_GL399353_1	21	5869	-
#Deleted in new
chrUn_GL399895_1	1605	6955	+
#Deleted in new
chrUn_GL400123_1	4867	10888	-
#Deleted in new
chrUn_GL402138_1	3	5887	+
#Deleted in new
chrUn_GL404234_1	0	5371	+
#Deleted in new
chrX	12263130	12269240	+
#Split in new
chrX	12641180	12647328	-
#Deleted in new
chrX	36716600	36722662	+
#Deleted in new
chrX	39973072	39979176	+
#Deleted in new
chrX	61652331	61658225	-
#Partially deleted in new
chrX	63804255	63810122	+
#Deleted in new
chrX	63933151	63939260	+
#Deleted in new
chrX	71918778	71924921	+
#Deleted in new
chrX	73638064	73643934	+
#Deleted in new
chrX	74544559	74549865	+
#Deleted in new
chrX	76287192	76293156	-
#Deleted in new
chrX	99374668	99380317	-
#Deleted in new
chrX	99455450	99462371	-
#Partially deleted in new
chrX	102199835	102206167	+
#Deleted in new
chrX	107829899	107835801	+
#Deleted in new
chrX	111739069	111745053	+
#Deleted in new
chrX	127640672	127646818	-
#Deleted in new
chrX	128882426	128887994	+
#Deleted in new
chrX	131648031	131653961	+
#Deleted in new
chrX	140873900	140880247	+
#Deleted in new
chrX_GL397613_1_random	340975	346557	+
#Partially deleted in new
chrX_GL397620_1_random	250577	256724	+
#Deleted in new
chrX_GL397742_2_random	210954	217097	-
#Deleted in new
chrX_GL397874_1_random	0	6125	-