Description

This track shows individual summits from Imbeault et al 2017. This study was a large scale ChIP-SEQ "screen" of ~200 KRAB Zinc Finger proteins HA tagged and expressed in 293 cells.

Methods

Raw data was downloaded from SRA.

Bowtie2 2.3.2 was run with in single-end mode and with --end-to-end --sensitive. MACS 2.1.1.20160309 was run with --keep-dup all and using the control SRR5197033.

References

KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks.

Imbeault M1, Helleboid PY1, Trono D1.

Nature. 2017 Mar 23;543(7646):550-554. doi: 10.1038/nature21683. Epub 2017 Mar 8.

Email:markd@ucsc.edu or max@soe.ucsc.edu