# count accession asmId sciName comName taxId bioSample asmType asmLevel asmData submitter asmSize maskedPerCent primary/secondary VGPClade 1 GCA_002915635.3 GCA_002915635.3_AmbMex60DD Ambystoma mexicanum axolotl (DD151 2021) 8296 SAMN06554622 haploid Chromosome 01 Apr 2021 Max Planck Society/University of Kentucky 28,206,905,576 68.20 secondary amphibians 2 GCA_003287225.2 GCA_003287225.2_phaCin_HiC Phascolarctos cinereus koala (Bilbo 61053 2022) 38626 SAMN06198159 haploid Scaffold 12 Dec 2022 The Earlham Institute 3,192,631,935 39.25 primary mammals 3 GCA_003369685.2 GCA_003369685.2_UOA_Angus_1 Bos indicus x Bos taurus hybrid cattle (Angus x Brahman F1 Angus haplotype 2018) 30522 SAMN08473802 haploid (principal pseudohaplotype of diploid) Chromosome 30 Nov 2018 University of Adelaide 2,580,764,822 47.42 secondary mammals 4 GCA_003957565.4 GCA_003957565.4_bTaeGut1.4.pri Taeniopygia guttata zebra finch (v1.4 Blue55 primary hap 2021 genbank) 59729 SAMN02981239 haploid (principal pseudohaplotype of diploid) Chromosome 04 May 2021 Vertebrate Genomes Project 1,056,271,264 20.99 secondary birds 5 GCA_005190385.3 GCA_005190385.3_NGI_Narwhal_2 Monodon monoceros narwhal (Baffin Bay Population NGI 2022) 40151 SAMN10872456 haploid Scaffold 09 Nov 2022 The Narwhal Genome Initiative 2,341,954,608 37.30 primary mammals 6 GCA_008658365.1 GCA_008658365.1_bAlcTor1_primary Alca torda razorbill (2006_11_07_Graehlm_vinge_78 2019) 28689 SAMN12292087 haploid (principal pseudohaplotype of diploid) Chromosome 10 Oct 2019 G10K 1,178,492,568 20.12 primary birds 7 GCA_008822115.3 GCA_008822115.3_bTaeGut2.mat.v3 Taeniopygia guttata zebra finch (v3 Blue55 maternal 2020) 59729 SAMN09946140 haploid (maternal haplotype of diploid) Chromosome 21 Feb 2020 Vertebrate Genomes Project 995,952,786 10.60 secondary birds 8 GCA_009764595.1 GCA_009764595.1_bGeoTri1.pri Geothlypis trichas common yellowthroat (primary hap 2019) 135433 SAMN12631222 haploid (principal pseudohaplotype of diploid) Chromosome 19 Dec 2019 G10K 1,078,128,490 10.78 primary birds 9 GCA_009769465.1 GCA_009769465.1_bTauEry1.pri Tauraco erythrolophus red-crested turaco (primary hap 2019) 121530 SAMN12621036 haploid (principal pseudohaplotype of diploid) Chromosome 19 Dec 2019 Vertebrate Genomes Project 1,252,271,553 12.01 primary birds 10 GCA_009769525.1 GCA_009769525.1_bPteGut1.pri Pterocles gutturalis yellow-throated sandgrouse (primary hap 2019) 240206 SAMN12623217 haploid (principal pseudohaplotype of diploid) Chromosome 23 Dec 2019 Vertebrate Genomes Project 1,127,422,757 8.95 primary birds 11 GCA_009769605.1 GCA_009769605.1_bBucAby1.pri Bucorvus abyssinicus Abyssinian ground-hornbill (primary hap 2019) 153643 SAMN12614799 haploid (principal pseudohaplotype of diploid) Chromosome 23 Dec 2019 Vertebrate Genomes Project 1,132,597,561 8.35 primary birds 12 GCA_009819595.1 GCA_009819595.1_bMerNub1.pri Merops nubicus carmine bee-eater (primary hap 2019) 57421 SAMN12621035 haploid (principal pseudohaplotype of diploid) Chromosome 31 Dec 2019 Vertebrate Genomes Project 1,149,356,202 11.68 primary birds 13 GCA_009819605.1 GCA_009819605.1_bSteHir1.pri Sterna hirundo common tern (primary hap 2019) 108405 SAMN12369541 haploid (principal pseudohaplotype of diploid) Chromosome 31 Dec 2019 Vertebrate Genomes Project 1,229,972,541 9.95 primary birds 14 GCA_009819775.1 GCA_009819775.1_bPhoRub2.pri Phoenicopterus ruber ruber American flamingo (primary hap 2019) 9218 SAMN12614931 haploid (principal pseudohaplotype of diploid) Chromosome 31 Dec 2019 Vertebrate Genomes Project 1,246,226,932 9.67 primary birds 15 GCA_009819825.1 GCA_009819825.1_bCarCri1.pri Cariama cristata red-legged seriema (primary hap 2019) 54380 SAMN12614807 haploid (principal pseudohaplotype of diploid) Chromosome 31 Dec 2019 Vertebrate Genomes Project 1,215,245,693 8.73 primary birds 16 GCA_009914755.4 GCA_009914755.4_T2T-CHM13v2.0 Homo sapiens human T2T CHM13 v2.0 (2022) 9606 (n/a) haploid Complete Genome 24 Jan 2022 T2T Consortium 3,117,292,070 54.59 primary primates 17 GCA_011004875.1 GCA_011004875.1_bBalReg1.pri Balearica regulorum gibbericeps East African grey crowned-crane (primary hap 2020) 100784 SAMN12615749 haploid (principal pseudohaplotype of diploid) Chromosome 05 Mar 2020 Vertebrate Genomes Project 1,221,051,782 9.83 primary birds 18 GCA_011078405.1 GCA_011078405.1_mCalJac1.mat Callithrix jacchus white-tufted-ear marmoset (maternal 2020) 9483 SAMN12368443 haploid (maternal haplotype of diploid) Chromosome 10 Mar 2020 Vertebrate Genomes Project 2,811,151,840 49.86 secondary primates 19 GCA_011100555.2 GCA_011100555.2_mCalJa1.2.pat.X Callithrix jacchus white-tufted-ear marmoset (v1.2 2021 genbank) 9483 SAMN12368443 haploid Chromosome 28 Apr 2021 Vertebrate Genomes Project 2,874,881,015 47.55 secondary mammals 20 GCA_011762505.3 GCA_011762505.3_mArvNil1.pat.X Arvicanthis niloticus African grass rat (v3 paternal hap 2024) 61156 SAMN12611849 haploid Chromosome 22 Oct 2024 Vertebrate Genomes Project 2,496,777,707 33.78 primary mammals 21 GCA_011762515.1 GCA_011762515.1_mTurTru1.pat Tursiops truncatus common bottlenose dolphin (paternal 2020) 9739 SAMN12326775 haploid (paternal haplotype of diploid) Scaffold 25 Mar 2020 Vertebrate Genomes Project 2,378,995,196 45.09 secondary mammals 22 GCA_012275275.1 GCA_012275275.1_bMelUnd1.pat Melopsittacus undulatus budgerigar (paternal hap 2020) 13146 SAMN12623090 haploid Scaffold 13 Apr 2020 Vertebrate Genomes Project 1,124,753,724 11.47 secondary birds 23 GCA_013358685.1 GCA_013358685.1_fAntMac1.pri Antennarius maculatus warty frogfish (primary hap 2020) 882753 SAMN12623626 haploid (principal pseudohaplotype of diploid) Chromosome 18 Jun 2020 Vertebrate Genomes Project 549,949,511 25.70 primary fish 24 GCA_013358815.1 GCA_013358815.1_fEleEle1.pri Electrophorus electricus electric eel (primary hap 2020 genbank) 8005 SAMN12623625 haploid (principal pseudohaplotype of diploid) Chromosome 23 Jun 2020 Vertebrate Genomes Project 589,376,265 24.89 secondary fish 25 GCA_014706295.1 GCA_014706295.1_ASM1470629v1 Lycocorax pyrrhopterus obiensis Obi paradise-crow (lycPyr6 2020) 2767082 SAMN15881065 haploid Scaffold 23 Sep 2020 Uppsala University 1,107,771,238 11.60 primary birds 26 GCA_014839685.1 GCA_014839685.1_fAnaAna1.pri Anableps anableps largescale foureyes (primary hap 2020) 195821 SAMN12623628 haploid (principal pseudohaplotype of diploid) Chromosome 02 Oct 2020 Vertebrate Genomes Project 867,632,993 38.75 primary fish 27 GCA_014839755.1 GCA_014839755.1_bSylBor1.pri Sylvia borin garden warbler (primary hap 2020) 73324 SAMN12618613 haploid (principal pseudohaplotype of diploid) Chromosome 02 Oct 2020 Vertebrate Genomes Project 1,045,652,180 9.11 primary birds 28 GCA_014839995.1 GCA_014839995.1_fXenCan1.pri Xenentodon cancila freshwater garfish (primary hap 2020) 129108 SAMN12623622 haploid (principal pseudohaplotype of diploid) Chromosome 02 Oct 2020 Vertebrate Genomes Project 736,214,936 30.53 primary fish 29 GCA_015852565.1 GCA_015852565.1_bf_hap-2 Branchiostoma floridae x Branchiostoma japonicum lancelets B.floridae x B.japonicum (bjbf 2020) 2700039 SAMN13896449 haploid Chromosome 09 Dec 2020 University of Vienna 490,782,628 38.40 primary invertebrate 30 GCA_016695395.2 GCA_016695395.2_mHomSap3.mat Homo sapiens human (mHomSap3 WGS:JACSEX01 2021) 9606 SAMN12568975 haploid (principal pseudohaplotype of diploid) Chromosome 19 Jan 2021 Vertebrate Genomes Project 2,902,214,236 52.22 secondary primates 31 GCA_016700455.2 GCA_016700455.2_mHomSap3.pat Homo sapiens human (WGS:JACSEW01 2021 alternate hap) 9606 SAMN12568975 alternate-pseudohaplotype Chromosome 19 Jan 2021 Vertebrate Genomes Project 2,744,463,177 51.25 secondary primates 32 GCA_016904835.1 GCA_016904835.1_bAcaChl1.pri Acanthisitta chloris rifleman (primary hap 2021) 57068 SAMN16442762 haploid (principal pseudohaplotype of diploid) Chromosome 17 Feb 2021 Vertebrate Genomes Project 1,077,387,582 10.83 primary birds 33 GCA_017639485.1 GCA_017639485.1_bPluApr1.pri Pluvialis apricaria European golden plover (primary hap 2021) 670352 SAMN18353970 haploid (principal pseudohaplotype of diploid) Chromosome 30 Mar 2021 Vertebrate Genomes Project 1,247,767,512 10.21 primary birds 34 GCA_017639555.1 GCA_017639555.1_bCicMag1.pri Ciconia maguari maguari stork (primary hap 2021) 52777 SAMN18353822 haploid (principal pseudohaplotype of diploid) Chromosome 30 Mar 2021 Vertebrate Genomes Project 1,239,437,416 8.11 primary birds 35 GCA_017639645.1 GCA_017639645.1_bFalNau1.mat Falco naumanni lesser kestrel (alternate hap 2021) 148594 SAMN16870685 alternate-pseudohaplotype Scaffold 30 Mar 2021 Vertebrate Genomes Project 1,156,765,323 9.26 secondary birds 36 GCA_017639675.1 GCA_017639675.1_fAplTae1.pri Aplochiton taeniatus peladilla (primary hap 2021) 946358 SAMN12623621 haploid (principal pseudohaplotype of diploid) Chromosome 30 Mar 2021 Vertebrate Genomes Project 461,946,147 20.73 primary fish 37 GCA_019207075.1 GCA_019207075.1_Bb-hap Branchiostoma floridae x Branchiostoma belcheri lancelets B.floridae x B.belcheri (bbbf 2021) 2700040 SAMN13907882 haploid Chromosome 13 Jul 2021 University of Vienna 405,532,174 36.80 primary invertebrate 38 GCA_019677235.1 GCA_019677235.1_HNU_Msal_1.0 Micropterus salmoides largemouth bass (2-A1 2021) 27706 SAMN15783178 haploid Chromosome 19 Aug 2021 Henan Normal University, Pearl River Fisheries Research Institute, CAFS 877,669,248 29.68 primary fish 39 GCA_020510985.1 GCA_020510985.1_fPhoLeu1.pri Pholidichthys leucotaenia convict blenny (primary hap 2021) 390368 SAMN12623617 haploid (principal pseudohaplotype of diploid) Chromosome 15 Oct 2021 G10K 6,032,307,556 85.55 primary fish 40 GCA_020740715.1 GCA_020740715.1_mJacJac1.pat.decon Jaculus jaculus lesser Egyptian jerboa (alternate hap 2021) 51337 SAMN20391724 alternate-pseudohaplotype Scaffold 03 Nov 2021 Vertebrate Genomes Project 2,595,216,862 42.83 secondary mammals 41 GCA_020745685.1 GCA_020745685.1_fTauAds1.pri.cur Tautogolabrus adspersus cunner (primary hap 2021) 34787 SAMN22589422 haploid (principal pseudohaplotype of diploid) Chromosome 05 Nov 2021 Vertebrate Genomes Project 723,582,185 30.38 primary fish 42 GCA_020745705.1 GCA_020745705.1_bHemCom1.pri.cur Hemiprocne comata whiskered treeswift (primary hap 2021) 243314 SAMN22588383 haploid (principal pseudohaplotype of diploid) Chromosome 05 Nov 2021 Vertebrate Genomes Project 1,164,813,063 12.42 primary birds 43 GCA_020745765.1 GCA_020745765.1_sHemOce1.mat.decon Hemiscyllium ocellatum epaulette shark (alternate hap sHemOce1 2021) 170820 SAMN22550098 alternate-pseudohaplotype Scaffold 05 Nov 2021 Vertebrate Genomes Project 4,149,461,884 44.34 secondary sharks 44 GCA_020745775.1 GCA_020745775.1_bTheCae1.pri.cur Theristicus caerulescens plumbeous ibis (primary hap 2021) 1118847 SAMN22550094 haploid (principal pseudohaplotype of diploid) Chromosome 05 Nov 2021 Vertebrate Genomes Project 1,203,372,763 8.30 primary birds 45 GCA_020746105.1 GCA_020746105.1_bTroSur1.pri.cur Trogon surrucura Suruca trogon (primary hap 2021) 297711 SAMN22550082 haploid (principal pseudohaplotype of diploid) Chromosome 05 Nov 2021 Vertebrate Genomes Project 1,165,749,515 12.78 primary birds 46 GCA_020800305.1 GCA_020800305.1_bPorHoc1.mat.Z.cur Porphyrio hochstetteri South Island takahe (primary hap 2021) 439704 SAMN22550412 haploid (principal pseudohaplotype of diploid) Chromosome 08 Nov 2021 Vertebrate Genomes Project 1,270,294,353 18.07 primary birds 47 GCA_020801775.1 GCA_020801775.1_bPorHoc1.pat.decon Porphyrio hochstetteri South Island takahe (alternate hap 2021) 439704 SAMN22550412 alternate-pseudohaplotype Scaffold 08 Nov 2021 Vertebrate Genomes Project 1,245,128,614 16.48 secondary birds 48 GCA_020826835.1 GCA_020826835.1_mDicBic1.pat.decon Diceros bicornis minor black rhinoceros (alternate hap 2021) 77932 SAMN22047685 alternate-pseudohaplotype Scaffold 10 Nov 2021 Vertebrate Genomes Project 3,044,793,931 45.90 secondary mammals 49 GCA_021292165.1 GCA_021292165.1_IOZ_Scro_1.0 Shinisaurus crocodilurus Chinese crocodile lizard (Guangxi GXDGS128 2021) 52224 SAMN19072228 haploid Chromosome 28 Dec 2021 Institute of Zoology, Chinese Academy of Sciences 2,189,995,079 43.23 primary reptiles 50 GCA_022682395.2 GCA_022682395.2_HLdesRot8B.1 Desmodus rotundus common vampire bat (v2 HL8 alternate hap 2022 genbank) 9430 SAMN24116476 alternate-pseudohaplotype Chromosome 24 Mar 2022 Bat1K 1,969,917,660 31.12 secondary mammals 51 GCA_022682495.2 GCA_022682495.2_HLdesRot8A.1 Desmodus rotundus common vampire bat (v2 HL8 primary hap 2022 genbank) 9430 SAMN24116476 haploid (principal pseudohaplotype of diploid) Chromosome 24 Mar 2022 Bat1K 2,119,704,833 32.64 primary mammals 52 GCA_023333525.2 GCA_023333525.2_rAspTig1.1.pri Aspidoscelis tigris stejnegeri San Diegan tiger whiptail (v1.1 HBS 135688 primary hap 2025) 2917703 SAMN25872408 haploid (principal pseudohaplotype of diploid) Chromosome 05 Mar 2025 UCLA 1,673,115,766 39.12 primary reptiles 53 GCA_023637945.2 GCA_023637945.2_bPhaSup1.pri Phaethornis superciliosus long-tailed hermit (v2 PSU5 primary hap 2025) 46513 SAMN23532249 haploid Chromosome 03 Feb 2025 The Max Planck Institute of Molecular Cell Biology and Genetics 1,020,009,783 20.12 primary birds 54 GCA_023851605.1 GCA_023851605.1_mTamTet1.pri Tamandua tetradactyla southern tamandua (mTamTet1 primary hap 2022) 48850 SAMN12612337 haploid (principal pseudohaplotype of diploid) Chromosome 22 Jun 2022 Vertebrate Genomes Project 3,205,741,135 45.80 primary mammals 55 GCA_024206055.2 GCA_024206055.2_GGswu Gallus gallus chicken (Huxu 2023) 9031 SAMN20717417 haploid Chromosome 09 Feb 2023 University of Vienna 1,100,928,095 23.58 secondary birds 56 GCA_024256435.1 GCA_024256435.1_CGAR_Hap1 Clarias gariepinus North African catfish (Netherlands MV-2021 primary hap 2022) 13013 SAMN27021044 haploid (principal pseudohaplotype of diploid) Chromosome 13 Jul 2022 Leibniz Institute for Farm Animal Biology (FBN) 972,641,408 39.05 primary fish 57 GCA_024256465.1 GCA_024256465.1_CGAR_Hap2 Clarias gariepinus North African catfish (Netherlands MV-2021 alternate hap 2022) 13013 SAMN27021044 alternate-pseudohaplotype Chromosome 13 Jul 2022 Leibniz Institute for Farm Animal Biology (FBN) 954,244,515 38.53 secondary fish 58 GCA_024294585.1 GCA_024294585.1_rVipLat1.pri Vipera latastei Lataste's viper (primary hap 2022) 246179 SAMN28408464 haploid (principal pseudohaplotype of diploid) Chromosome 20 Jul 2022 Vertebrate Genomes Project 1,631,568,913 49.48 primary reptiles 59 GCA_024453875.1 GCA_024453875.1_ASM2445387v1 Scardinius erythrophthalmus rudd (Europe DD20220513a primary hap 2022) 58319 SAMN28618522 haploid (principal pseudohaplotype of diploid) Chromosome 27 Jul 2022 The Max Planck Institute of Molecular Cell Biology and Genetics 1,135,838,337 49.98 secondary fish 60 GCA_024803745.1 GCA_024803745.1_mThoBot1.0.p Thomomys bottae Botta's pocket gopher (bottae MVZ:Mamm:240275 primary hap 2022) 10013 SAMN29044214 haploid (principal pseudohaplotype of diploid) Scaffold 01 Sep 2022 UCLA 2,845,630,888 49.18 secondary mammals 61 GCA_025201965.1 GCA_025201965.1_rGopFla2.pat.asm Gopherus flavomarginatus Mexican gopher tortoise (WGS:JAMKFD01 2022) 286002 SAMN24199108 haploid (paternal haplotype of diploid) Scaffold 08 Sep 2022 Vertebrate Genomes Project 2,584,697,711 45.21 secondary reptiles 62 GCA_026018925.1 GCA_026018925.1_mTupTan1 Tupaia tana large tree shrew (BS70 2022) 70687 SAMN07678117 haploid Scaffold 07 Nov 2022 University of California, Davis 2,948,294,157 46.75 primary mammals 63 GCA_026229955.1 GCA_026229955.1_mPerMan1.0.p Peromyscus maniculatus sonoriensis North American deer mouse (MVZ:Mamm:240117 primary hap 2022) 372063 SAMN29044276 haploid (principal pseudohaplotype of diploid) Scaffold 14 Nov 2022 UCLA 2,847,741,276 48.05 primary mammals 64 GCA_026230045.1 GCA_026230045.1_mCorTow1.0.hap2 Corynorhinus townsendii Townsend's big-eared bat (haplotype 2 of 2 COTO_CA2020_CCGP 2022) 124745 SAMN31536067 haploid Scaffold 18 Nov 2022 UCLA 1,961,562,149 36.39 secondary mammals 65 GCA_026230055.1 GCA_026230055.1_mCorTow1.0.hap1 Corynorhinus townsendii Townsend's big-eared bat (haplotype 1 of 2 COTO_CA2020_CCGP 2022) 124745 SAMN31536067 haploid Scaffold 18 Nov 2022 UCLA 2,104,912,948 37.42 primary mammals 66 GCA_026419985.1 GCA_026419985.1_mKogBre1_haplotype_2 Kogia breviceps pygmy sperm whale (mKogBre1 haplotype 2 2022) 27615 SAMN31719513 haploid Chromosome 27 Nov 2022 Genome 10K 2,613,416,393 41.38 secondary mammals 67 GCA_026652325.1 GCA_026652325.1_ASM2665232v1 Pleurodeles waltl Iberian ribbed newt (20211129_DDA 2022 genbank) 8319 SAMN28911188 haploid Chromosome 05 Dec 2022 The Max Planck Institute of Molecular Cell Biology and Genetics 20,300,798,037 71.01 primary amphibians 68 GCA_027408225.1 GCA_027408225.1_bGalGal5.pri Gallus gallus chicken (Cobb bGalGal5 primary hap 2022) 9031 SAMN28017485 haploid (principal pseudohaplotype of diploid) Chromosome 28 Dec 2022 Vertebrate Genomes Project 1,109,044,877 18.25 secondary birds 69 GCA_027410445.1 GCA_027410445.1_aDisPic1.pri Discoglossus pictus painted frog (primary hap 2022) 8351 SAMN32227109 haploid (principal pseudohaplotype of diploid) Chromosome 28 Dec 2022 Vertebrate Genomes Project 3,872,602,052 64.30 primary amphibians 70 GCA_027474245.1 GCA_027474245.1_bSphHub1.pri Spheniscus humboldti Humboldt's penguin (bSphHub1 primary hap 2022) 9240 SAMN28408465 haploid (principal pseudohaplotype of diploid) Chromosome 28 Dec 2022 Vertebrate Genomes Project 1,358,357,718 16.34 primary birds 71 GCA_027557775.1 GCA_027557775.1_bGalGal4.pri Gallus gallus chicken (Ross bGalGal4 primary hap 2023) 9031 SAMN28017486 haploid (principal pseudohaplotype of diploid) Chromosome 03 Jan 2023 Vertebrate Genomes Project 1,094,281,734 17.43 secondary birds 72 GCA_027559615.1 GCA_027559615.1_bAcrTri1.pri Acridotheres tristis common myna (bArcTri1 primary hap 2023) 279927 SAMN28454388 haploid (principal pseudohaplotype of diploid) Chromosome 09 Jan 2023 Vertebrate Genomes Project 1,193,419,045 20.08 primary birds 73 GCA_027563665.1 GCA_027563665.1_DD_ASM_mAP_20210503 Antrozous pallidus pallid bat (TK200870 primary hap 2023) 9440 SAMN30225125 haploid (principal pseudohaplotype of diploid) Chromosome 09 Jan 2023 Bat1K 2,126,460,045 39.43 primary mammals 74 GCA_027574665.1 GCA_027574665.1_bRhyJub1.pri Rhynochetos jubatus kagu (bRhyJub1 primary hap 2023) 54386 SAMN31802033 haploid (principal pseudohaplotype of diploid) Chromosome 09 Jan 2023 Vertebrate Genomes Project 1,331,454,348 17.50 primary birds 75 GCA_027789725.1 GCA_027789725.1_aDenEbr1.mat Dendropsophus ebraccatus hourglass treefrog (maternal 2023 genbank) 150705 SAMN32145295 haploid (maternal haplotype of diploid) Scaffold 13 Jan 2023 Vertebrate Genomes Project 2,352,821,159 56.39 secondary amphibians 76 GCA_027887205.1 GCA_027887205.1_rMalTer1.hap2 Malaclemys terrapin pileata diamondback terrapin (hap2 rMalTer1 2023) 2991368 SAMN31394215 haploid Chromosome 18 Jan 2023 Vertebrate Genomes Project 2,212,837,039 46.36 secondary reptiles 77 GCA_027917415.1 GCA_027917415.1_aGasCar1.hap2 Gastrophryne carolinensis eastern narrow-mouthed toad (hap2 2023) 8429 SAMN31805274 haploid Chromosome 18 Jan 2023 Vertebrate Genomes Project 4,305,890,454 71.46 secondary amphibians 78 GCA_027917425.1 GCA_027917425.1_aGasCar1.pri Gastrophryne carolinensis eastern narrow-mouthed toad (primary haplotype 2023) 8429 SAMN31805274 haploid Chromosome 18 Jan 2023 Vertebrate Genomes Project 4,336,248,441 71.19 primary amphibians 79 GCA_027942865.1 GCA_027942865.1_fOdoBon6.hap1 Odontesthes bonariensis pejerrey (fOdoBon6 haplotype 1 2023) 219752 SAMN31802211 haploid Chromosome 24 Jan 2023 Vertebrate Genomes Project 945,823,896 38.82 primary fish 80 GCA_027942885.1 GCA_027942885.1_fOdoBon6.hap2 Odontesthes bonariensis pejerrey (fOdoBon6 haplotype 2 2023) 219752 SAMN31802211 haploid Scaffold 20 Jan 2023 Vertebrate Genomes Project 974,945,057 40.81 secondary fish 81 GCA_028017805.1 GCA_028017805.1_mBalRic1.hap1 Balaenoptera ricei Rice's whale (hap1 2023) 2746895 SAMN32629060 haploid Scaffold 26 Jan 2023 Vertebrate Genomes Project 2,844,045,133 39.87 secondary mammals 82 GCA_028017845.1 GCA_028017845.1_rEmyOrb1.hap2 Emys orbicularis European pond turtle (hap2 rEmyOrb1 2023) 82168 SAMN31805221 haploid Scaffold 26 Jan 2023 Vertebrate Genomes Project 2,327,425,914 45.57 secondary reptiles 83 GCA_028020825.1 GCA_028020825.1_bPodStr1.pri Podargus strigoides tawny frogmouth (bPodStr1 primary hap 2023) 8905 SAMN31801959 haploid (principal pseudohaplotype of diploid) Chromosome 31 Jan 2023 Vertebrate Genomes Project 1,271,141,449 27.67 primary birds 84 GCA_028021495.1 GCA_028021495.1_fLycPai1.hap1 Lycodopsis pacificus blackbelly eelpout (fLycPai1 haplotype 1 2023) 1772091 SAMN32629383 haploid Scaffold 26 Jan 2023 Vertebrate Genomes Project 661,271,547 30.40 secondary fish 85 GCA_028022725.1 GCA_028022725.1_fLycPai1.hap2 Lycodopsis pacificus blackbelly eelpout (fLycPai1 haplotype 2 2023) 1772091 SAMN32629383 haploid Chromosome 31 Jan 2023 Vertebrate Genomes Project 646,369,862 29.94 primary fish 86 GCA_028022735.1 GCA_028022735.1_bGypBar2.pri Gypaetus barbatus lammergeier (bGypBar2 primary hap 2023) 33610 SAMN32256411 haploid (principal pseudohaplotype of diploid) Chromosome 31 Jan 2023 Vertebrate Genomes Project 1,365,299,843 17.56 primary birds 87 GCA_028390055.1 GCA_028390055.1_aPseCor3.hap1 Pseudophryne corroboree corroboree frog (hap1 2023) 495146 SAMN32631236 haploid Scaffold 01 Feb 2023 Vertebrate Genomes Project 8,945,609,516 76.17 secondary amphibians 88 GCA_028451465.1 GCA_028451465.1_mEreDor1.pri Erethizon dorsatum North American porcupine (mEreDor1 primary hap 2023) 34844 SAMN32359106 haploid (principal pseudohaplotype of diploid) Chromosome 06 Feb 2023 Vertebrate Genomes Project 2,432,147,792 41.67 primary mammals 89 GCA_028501385.1 GCA_028501385.1_bRisTri1.mat.cur.20221130 Rissa tridactyla black-legged kittiwake (bRisTri1.mat 2023) 75485 SAMN32104255 haploid (maternal haplotype of diploid) Chromosome 10 Feb 2023 Vertebrate Genomes Project 1,268,441,171 18.86 secondary birds 90 GCA_028571275.1 GCA_028571275.1_mEubGla1.hap1 Eubalaena glacialis North Atlantic right whale (hap1 2023) 27606 SAMN32746534 haploid Chromosome 09 Feb 2023 Vertebrate Genomes Project 2,615,329,254 43.42 secondary mammals 91 GCA_028571685.1 GCA_028571685.1_mHetBru1.pri Heterohyrax brucei yellow-spotted hyrax (mHetBru1 2023) 77598 SAMN33092455 haploid Chromosome 10 Feb 2023 Vertebrate Genomes Project 3,488,059,404 55.27 primary mammals 92 GCA_028858555.1 GCA_028858555.1_bAraAra1.hap2 Ara ararauna blue-and-yellow macaw (hap2 2023) 9226 SAMN33059336 haploid Chromosome 24 Feb 2023 Vertebrate Genomes Project 1,302,242,811 28.73 secondary birds 93 GCA_028858595.1 GCA_028858595.1_bGruAme1.pat Grus americana whooping crane (paternal hap 2023) 9117 SAMN32775697 haploid (paternal haplotype of diploid) Chromosome 24 Feb 2023 Vertebrate Genomes Project 1,200,805,165 20.22 secondary birds 94 GCA_028858625.2 GCA_028858625.2_bColStr4.1.hap2 Colius striatus speckled mousebird (v2 hap2 2023) 57412 SAMN33339572 haploid Chromosome 24 Feb 2023 Vertebrate Genomes Project 1,153,503,718 25.49 secondary birds 95 GCA_028858755.1 GCA_028858755.1_bAraAra1.hap1 Ara ararauna blue-and-yellow macaw (hap1 2023) 9226 SAMN33059336 haploid Chromosome 24 Feb 2023 Vertebrate Genomes Project 1,224,360,198 24.87 primary birds 96 GCA_028858805.2 GCA_028858805.2_NHGRI_mPanTro3-v2.0_alt Pan troglodytes chimpanzee (v2 AG18354 alternate hap 2024) 9598 SAMN30216104 alternate-pseudohaplotype Complete Genome 08 Jan 2024 National Human Genome Research Institute, National Institutes of Health 2,998,472,174 48.84 secondary primates 97 GCA_028878085.3 GCA_028878085.3_NHGRI_mSymSyn1-v2.0_alt Symphalangus syndactylus siamang (v3 Jambi alternate hap 2024) 9590 SAMN30216103 alternate-pseudohaplotype Chromosome 05 Jan 2024 National Human Genome Research Institute, National Institutes of Health 3,097,367,794 55.60 secondary primates 98 GCA_028885525.2 GCA_028885525.2_NHGRI_mPonPyg2-v2.0_alt Pongo pygmaeus Bornean orangutan (v2 AG05252 alternate hap 2024) 9600 SAMN10521809 alternate-pseudohaplotype Chromosome 08 Jan 2024 National Human Genome Research Institute, National Institutes of Health 3,007,136,161 53.74 secondary primates 99 GCA_028885685.2 GCA_028885685.2_NHGRI_mPonAbe1-v2.0_alt Pongo abelii Sumatran orangutan (v2 AG06213 alternate hap 2024) 9601 SAMN10521808 alternate-pseudohaplotype Chromosome 05 Jan 2024 National Human Genome Research Institute, National Institutes of Health 3,000,996,708 53.59 secondary primates 100 GCA_029215775.1 GCA_029215775.1_rAnnSte1.0.hap1 Anniella stebbinsi San Diegan legless lizard (HBS135921 primary hap 2023) 2202111 SAMN33386066 haploid Scaffold 14 Mar 2023 UCLA 1,890,507,581 50.38 primary reptiles 101 GCA_029215795.1 GCA_029215795.1_rAnnSte1.0.hap2 Anniella stebbinsi San Diegan legless lizard (HBS135921 alternate hap 2023) 2202111 SAMN33386066 haploid Scaffold 14 Mar 2023 UCLA 1,891,076,299 50.62 secondary reptiles 102 GCA_029493135.1 GCA_029493135.1_aHylSar1.hap2 Hyla sarda Sardinian treefrog (hap2 2023) 327740 SAMN32629340 haploid Scaffold 30 Mar 2023 Vertebrate Genomes Project 4,080,080,015 70.95 secondary amphibians 103 GCA_029633845.1 GCA_029633845.1_fLamInc1.hap1 Lampris incognitus smalleye Pacific opah (hap1 2023) 2546036 SAMN34060140 haploid Scaffold 07 Apr 2023 Vertebrate Genomes Project 1,477,069,270 54.54 secondary fish 104 GCA_029633875.2 GCA_029633875.2_fHopMal1.hap2 Hoplias malabaricus trahira (v2 hap2 2024) 27720 SAMN32740525 haploid (haplotype 2) Chromosome 13 Dec 2024 Vertebrate Genomes Project 1,026,599,506 38.80 secondary fish 105 GCA_029931755.1 GCA_029931755.1_rEulEur1.hap2 Euleptes europaea European leaf-toed gecko (hap2 2023) 460621 SAMN32622440 haploid Scaffold 03 May 2023 Vertebrate Genomes Project 1,775,520,415 48.74 secondary reptiles 106 GCA_030015355.1 GCA_030015355.1_fTriRos1.hap2 Trichomycterus rosablanca Rosablanca catfish (hap2 2023) 2290929 SAMN32755940 haploid Scaffold 15 May 2023 Vertebrate Genomes Project 996,754,446 54.53 secondary fish 107 GCA_030020295.1 GCA_030020295.1_rGavGan2.hap2 Gavialis gangeticus gharial (hap2 2023) 94835 SAMN34116453 haploid Chromosome 22 May 2023 Vertebrate Genomes Project 2,328,538,659 42.15 primary reptiles 108 GCA_030020305.1 GCA_030020305.1_mLoxAfr1.hap1 Loxodonta africana African savanna elephant (hap1 mLoxAfr1 2023) 9785 SAMN32756554 haploid Scaffold 15 May 2023 Vertebrate Genomes Project 3,575,747,632 53.99 secondary mammals 109 GCA_030020385.1 GCA_030020385.1_rGavGan2.hap1 Gavialis gangeticus gharial (hap1 2023) 94835 SAMN34116453 haploid Scaffold 16 May 2023 Vertebrate Genomes Project 2,339,480,201 42.69 secondary reptiles 110 GCA_030020945.1 GCA_030020945.1_mManPen7.hap2 Manis pentadactyla Chinese pangolin (hap2 mManPen7 2023) 143292 SAMN32757332 haploid Scaffold 16 May 2023 Vertebrate Genomes Project 2,869,287,698 40.48 secondary mammals 111 GCA_030020955.1 GCA_030020955.1_mDugDug1.hap2 Dugong dugon dugong (hap2 mDugDug1 2023) 29137 SAMN33212336 haploid Scaffold 16 May 2023 Vertebrate Genomes Project 3,154,453,075 52.52 secondary mammals 112 GCA_030028035.1 GCA_030028035.1_mHipAmp2.hap1 Hippopotamus amphibius kiboko hippopotamus (mHipAmp2 hap1 2023) 575201 SAMN33342074 haploid Scaffold 17 May 2023 Vertebrate Genomes Project 2,533,318,371 35.57 secondary mammals 113 GCA_030035585.1 GCA_030035585.1_mDugDug1.hap1 Dugong dugon dugong (hap1 mDugDug1 2023) 29137 SAMN33212336 haploid Chromosome 18 May 2023 Vertebrate Genomes Project 3,158,488,110 51.64 primary mammals 114 GCA_030035685.1 GCA_030035685.1_sMobBir1.hap2 Mobula birostris giant manta (hap2 2023) 1983395 SAMN32746370 haploid Chromosome 22 May 2023 Vertebrate Genomes Project 3,634,101,053 63.65 secondary sharks 115 GCA_030035715.1 GCA_030035715.1_rRhiFlo1.hap1 Rhineura floridana Florida worm lizard (hap1 rRhiFlo1 2023) 261503 SAMN34105704 haploid Scaffold 16 May 2023 Vertebrate Genomes Project 2,321,796,813 57.36 secondary reptiles 116 GCA_030144785.1 GCA_030144785.1_sHypSab1.hap2 Hypanus sabinus Atlantic stingray (hap2 2023) 79690 SAMN32745077 haploid Chromosome 05 Jun 2023 Vertebrate Genomes Project 3,635,158,545 62.01 secondary sharks 117 GCA_030412085.1 GCA_030412085.1_rCycPin1.hap2 Cyclura pinguis Grand Cayman blue iguana (hap2 2023) 118683 SAMN35151422 haploid Scaffold 05 Jul 2023 Vertebrate Genomes Project 1,955,392,031 42.99 secondary reptiles 118 GCA_030412105.1 GCA_030412105.1_rCycPin1.hap1 Cyclura pinguis Grand Cayman blue iguana (hap1 2023) 118683 SAMN35151422 haploid Chromosome 05 Jul 2023 Vertebrate Genomes Project 1,983,631,412 43.65 primary reptiles 119 GCA_030435715.1 GCA_030435715.1_mOchPri1.hap2 Ochotona princeps American pika (hap2 2023) 9978 SAMN35822658 haploid Chromosome 13 Jul 2023 Vertebrate Genomes Project 2,534,779,560 46.53 secondary mammals 120 GCA_030440675.1 GCA_030440675.1_ASM3044067v1 Furcifer pardalis lizards F.pardalis (Fpa_1 2023) 187939 SAMN35298317 haploid Chromosome 12 Jul 2023 Institute of Zoology, Chinese Academy of Sciences 1,609,777,135 48.63 primary reptiles 121 GCA_030445055.2 GCA_030445055.2_mDasNov1.1.hap1 Dasypus novemcinctus nine-banded armadillo (v2 hap1 2023) 9361 SAMN32738980 haploid Chromosome 13 Jul 2023 Vertebrate Genomes Project 3,296,222,425 42.23 secondary mammals 122 GCA_030448965.1 GCA_030448965.1_fSalBra1.hap1 Salminus brasiliensis dorado (hap1 2023) 930266 SAMN35075251 haploid Scaffold 13 Jul 2023 Vertebrate Genomes Project 1,078,246,036 44.63 secondary fish 123 GCA_030463565.1 GCA_030463565.1_bPelCri1.pri Pelecanus crispus Dalmatian pelican (primary hap 2023) 36300 SAMN35784560 haploid (principal pseudohaplotype of diploid) Chromosome 18 Jul 2023 Vertebrate Genomes Project 1,314,587,946 24.65 primary birds 124 GCA_030490855.1 GCA_030490855.1_bPoeAtr1.hap2 Poecile atricapillus black-capped chickadee (hap2 2023) 48891 SAMN35074507 haploid Chromosome 18 Jul 2023 Vertebrate Genomes Project 987,998,379 14.40 secondary birds 125 GCA_030684295.1 GCA_030684295.1_sSteTig4.hap2 Stegostoma tigrinum zebra shark (hap2 2023) 3053191 SAMN35823397 haploid Scaffold 07 Aug 2023 Vertebrate Genomes Project 3,603,936,669 64.88 secondary sharks 126 GCA_030820635.1 GCA_030820635.1_KIZ_Lrid_1.0 Chroicocephalus ridibundus black-headed gull (Kunming 2023) 1192867 SAMN36812646 haploid Chromosome 18 Aug 2023 Kunming Institute of Zoology 1,243,762,172 23.13 secondary birds 127 GCA_030848825.1 GCA_030848825.1_DD_mTadBra1_pri Tadarida brasiliensis Brazilian free-tailed bat (primary hap 2023) 9438 SAMN35075070 haploid (principal pseudohaplotype of diploid) Chromosome 22 Aug 2023 Bat1K 2,283,188,801 36.16 primary mammals 128 GCA_030867065.1 GCA_030867065.1_rAllMis1 Alligator mississippiensis American alligator (2023 genbank) 8496 SAMN37045233 haploid Scaffold 22 Aug 2023 Vertebrate Genomes Project 2,373,280,586 43.05 secondary reptiles 129 GCA_030867085.1 GCA_030867085.1_rLiaOli1.hap2 Liasis olivaceus olive python (hap2 2023) 283338 SAMN32739907 haploid Chromosome 24 Aug 2023 Vertebrate Genomes Project 1,478,263,624 35.43 secondary reptiles 130 GCA_030867105.1 GCA_030867105.1_rLiaOli1.hap1 Liasis olivaceus olive python (hap1 2023) 283338 SAMN32739907 haploid Chromosome 24 Aug 2023 Vertebrate Genomes Project 1,486,119,866 35.92 primary reptiles 131 GCA_030867145.1 GCA_030867145.1_bOpiHoa1.hap1 Opisthocomus hoazin hoatzin (hap1 2023) 30419 SAMN37055462 haploid Complete Genome 24 Aug 2023 Vertebrate Genomes Project 1,482,459,898 25.27 primary birds 132 GCA_030867165.1 GCA_030867165.1_bOpiHoa1.hap2 Opisthocomus hoazin hoatzin (hap2 2023) 30419 SAMN37055462 haploid Complete Genome 24 Aug 2023 Vertebrate Genomes Project 1,355,639,139 24.22 secondary birds 133 GCA_030936125.1 GCA_030936125.1_bGavSte3.hap1 Gavia stellata red-throated loon (hap1 2023) 37040 SAMN37096312 haploid Complete Genome 30 Aug 2023 Vertebrate Genomes Project 1,403,461,371 20.10 secondary birds 134 GCA_031001685.1 GCA_031001685.1_rEryReg1.hap3 Erythrolamprus reginae royal ground snake (hap3 2023) 121349 SAMN32631248 haploid Contig 30 Aug 2023 Vertebrate Genomes Project 2,090,234,102 64.15 secondary reptiles 135 GCA_031021085.1 GCA_031021085.1_rEryReg1.hap2 Erythrolamprus reginae royal ground snake (hap2 2023) 121349 SAMN32631248 haploid Contig 30 Aug 2023 Vertebrate Genomes Project 2,038,227,610 59.44 secondary reptiles 136 GCA_031216445.1 GCA_031216445.1_YSFRI_Lmacu_1.1 Lateolabrax maculatus spotted sea bass (ZS-2023 2023) 315492 SAMN36708487 haploid Chromosome 07 Sep 2023 Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences 632,510,465 26.28 primary fish 137 GCA_031468805.1 GCA_031468805.1_bMorBas2.hap1 Morus bassanus northern gannet (hap1 2023) 37578 SAMN37096299 haploid Chromosome 15 Sep 2023 Vertebrate Genomes Project 1,381,630,140 17.61 secondary birds 138 GCA_031468815.1 GCA_031468815.1_bMorBas2.hap2 Morus bassanus northern gannet (hap2 2023) 37578 SAMN37096299 haploid Complete Genome 15 Sep 2023 Vertebrate Genomes Project 1,294,804,326 12.58 primary birds 139 GCA_031876335.1 GCA_031876335.1_mHipLar1.pri Hipposideros larvatus intermediate roundleaf bat (primary hap 2023) 175524 SAMN36277597 haploid (principal pseudohaplotype of diploid) Chromosome 25 Sep 2023 Vertebrate Genomes Project 2,338,923,724 35.90 primary mammals 140 GCA_031877785.1 GCA_031877785.1_bStrAlu1.hap2 Strix aluco tawny owl (hap2 2023) 111821 SAMN37055808 haploid Chromosome 25 Sep 2023 Vertebrate Genomes Project 1,219,048,950 15.11 secondary birds 141 GCA_031877795.1 GCA_031877795.1_bStrAlu1.hap1 Strix aluco tawny owl (hap1 2023) 111821 SAMN37055808 haploid Chromosome 25 Sep 2023 Vertebrate Genomes Project 1,414,802,443 18.97 primary birds 142 GCA_031878655.1 GCA_031878655.1_mTapInd1.hap1 Tapirus indicus Asiatic tapir (hap1 2023) 9802 SAMN37096863 haploid Chromosome 25 Sep 2023 Vertebrate Genomes Project 2,498,393,425 38.08 secondary mammals 143 GCA_031878665.1 GCA_031878665.1_mThoBot2.hap2 Thomomys bottae Botta's pocket gopher (hap2 2023) 10013 SAMN37300244 haploid Chromosome 25 Sep 2023 Vertebrate Genomes Project 1,879,249,320 36.75 secondary mammals 144 GCA_031878675.1 GCA_031878675.1_mThoBot2.hap1 Thomomys bottae Botta's pocket gopher (hap1 2023) 10013 SAMN37300244 haploid Chromosome 25 Sep 2023 Vertebrate Genomes Project 2,025,650,949 38.03 primary mammals 145 GCA_031878705.1 GCA_031878705.1_mTapInd1.hap2 Tapirus indicus Asiatic tapir (hap2 2023) 9802 SAMN37096863 haploid Chromosome 25 Sep 2023 Vertebrate Genomes Project 2,477,445,429 38.23 primary mammals 146 GCA_031885435.1 GCA_031885435.1_bPasSan2.pri Passerculus sandwichensis Savannah sparrow (primary hap 2023) 161624 SAMN35784765 haploid (principal pseudohaplotype of diploid) Chromosome 25 Sep 2023 Vertebrate Genomes Project 1,270,940,266 23.70 primary birds 147 GCA_031893025.1 GCA_031893025.1_aLepFus1.hap1 Leptodactylus fuscus rufous frog (hap1 2023) 238119 SAMN37055805 haploid Chromosome 26 Sep 2023 Vertebrate Genomes Project 2,307,711,212 57.86 secondary amphibians 148 GCA_031893055.1 GCA_031893055.1_aLepFus1.hap2 Leptodactylus fuscus rufous frog (hap2 2023) 238119 SAMN37055805 haploid Chromosome 26 Sep 2023 Vertebrate Genomes Project 2,197,996,823 59.61 primary amphibians 149 GCA_032164245.1 GCA_032164245.1_rSteOdo2_p1.0 Sternotherus odoratus eastern musk turtle (primary hap 2023) 142480 SAMN36942441 haploid (principal pseudohaplotype of diploid) Scaffold 29 Sep 2023 Canada's Genomic Enterprise 1,759,411,633 39.18 primary reptiles 150 GCA_032719375.1 GCA_032719375.1_Trm_1.0 Columba livia rock pigeon (Tarim TR01 2023) 8932 SAMN37449930 haploid Chromosome 18 Oct 2023 Shanghai Jiao Tong University 1,295,808,506 22.56 secondary birds 151 GCA_033296515.1 GCA_033296515.1_rMacSuw1.hap1 Macrochelys suwanniensis Suwannee snapping turtle (hap1 2023) 3026461 SAMN37052244 haploid Chromosome 06 Nov 2023 Vertebrate Genomes Project 2,132,261,265 43.19 secondary reptiles 152 GCA_033349115.1 GCA_033349115.1_rMacSuw1.hap2 Macrochelys suwanniensis Suwannee snapping turtle (hap2 2023) 3026461 SAMN37052244 haploid Chromosome 06 Nov 2023 Vertebrate Genomes Project 1,937,254,095 43.13 primary reptiles 153 GCA_033958435.1 GCA_033958435.1_ASM3395843v1 Carettochelys insculpta pitted-shelled turtle (YL-2023 2023) 44489 SAMN38222597 haploid Chromosome 27 Nov 2023 Northwestern Polytechnical University 2,180,317,067 47.95 primary reptiles 154 GCA_034619455.1 GCA_034619455.1_bLepDis1.hap1 Leptosomus discolor cuckoo roller (hap1 2023) 188344 SAMN37284216 haploid Chromosome 27 Dec 2023 Vertebrate Genomes Project 1,327,905,210 24.00 secondary birds 155 GCA_034619465.1 GCA_034619465.1_bLepDis1.hap2 Leptosomus discolor cuckoo roller (hap2 2023) 188344 SAMN37284216 haploid Chromosome 27 Dec 2023 Vertebrate Genomes Project 1,332,047,658 18.21 primary birds 156 GCA_035046495.1 GCA_035046495.1_rTilSci1.hap1 Tiliqua scincoides common blue-tongued skink (hap1 2024) 71010 SAMN37319749 haploid Chromosome 03 Jan 2024 Vertebrate Genomes Project 1,694,434,935 37.75 secondary reptiles 157 GCA_035046505.1 GCA_035046505.1_rTilSci1.hap2 Tiliqua scincoides common blue-tongued skink (hap2 2024) 71010 SAMN37319749 haploid Chromosome 03 Jan 2024 Vertebrate Genomes Project 1,623,332,312 37.07 primary reptiles 158 GCA_035083965.1 GCA_035083965.1_klBraLanc5.hap2 Branchiostoma lanceolatum amphioxus (hap2 2024 genbank) 7740 SAMN38372375 haploid Chromosome 05 Jan 2024 Vertebrate Genomes Project 458,287,516 27.49 primary invertebrate 159 GCA_035084065.1 GCA_035084065.1_sHydCol1.hap1 Hydrolagus colliei spotted ratfish (hap1 2024) 7873 SAMN39156054 haploid Chromosome 05 Jan 2024 Vertebrate Genomes Project 1,097,847,766 44.94 secondary sharks 160 GCA_035084135.1 GCA_035084135.1_sHepPer1.hap2 Heptranchias perlo sharpnose sevengill shark (hap2 2024) 212740 SAMN38891902 haploid Scaffold 04 Jan 2024 Vertebrate Genomes Project 3,059,754,027 55.71 secondary sharks 161 GCA_035084275.1 GCA_035084275.1_sHydCol1.hap2 Hydrolagus colliei spotted ratfish (hap2 2024) 7873 SAMN39156054 haploid Chromosome 05 Jan 2024 Vertebrate Genomes Project 1,003,172,678 44.82 primary sharks 162 GCA_035125265.1 GCA_035125265.1_rCanAsp1.hap1 Candoia aspera Papuan ground boa (hap1 2024) 51853 SAMN37159891 haploid Scaffold 05 Jan 2024 Vertebrate Genomes Project 1,529,331,567 33.58 secondary reptiles 163 GCA_035149815.1 GCA_035149815.1_klBraLanc5.hap1 Branchiostoma lanceolatum amphioxus (hap1 2024) 7740 SAMN38372375 haploid Chromosome 05 Jan 2024 Vertebrate Genomes Project 455,264,310 27.22 secondary invertebrate 164 GCA_035609135.1 GCA_035609135.1_aEleCoq1.hap2 Eleutherodactylus coqui Puerto Rican coqui (hap2 2024) 57060 SAMN39150572 haploid Chromosome 12 Jan 2024 Vertebrate Genomes Project 3,362,534,901 53.92 secondary amphibians 165 GCA_036010745.1 GCA_036010745.1_bCalNic1.hap2 Caloenas nicobarica Nicobar pigeon (hap2 2024) 187106 SAMN39256628 haploid Chromosome 24 Jan 2024 Vertebrate Genomes Project 1,197,404,482 23.25 secondary birds 166 GCA_036010775.2 GCA_036010775.2_bColLiv1.mat.v2 Columba livia rock pigeon (v2 racing homer maternal hap 2024) 8932 SAMN38891892 haploid (maternal haplotype of diploid) Chromosome 08 Apr 2024 Vertebrate Genomes Project 1,181,506,259 28.60 secondary birds 167 GCA_036010785.1 GCA_036010785.1_bAmmMar1.pri Ammospiza maritima maritima seaside sparrow (bAmmMar1 primary hap 2024) 3111550 SAMN39181024 haploid (principal pseudohaplotype of diploid) Chromosome 24 Jan 2024 Vertebrate Genomes Project 1,397,856,043 34.58 primary birds 168 GCA_036172335.1 GCA_036172335.1_bHelExo1.hap2 Heliangelus exortis tourmaline sunangel (hap2 2024) 472823 SAMN37253778 haploid Chromosome 26 Jan 2024 Vertebrate Genomes Project 969,853,240 21.82 secondary birds 169 GCA_036172795.1 GCA_036172795.1_aPelIbe1.pri Pelodytes ibericus Iberian parsley frog (aPelIbe1 2024) 233781 SAMN37110875 haploid Chromosome 26 Jan 2024 Vertebrate Genomes Project 2,077,659,799 49.33 primary amphibians 170 GCA_036250135.1 GCA_036250135.1_bDixPip1.hap2 Pseudopipra pipra white-crowned manakin (hap2 2024) 415032 SAMN32739894 haploid Chromosome 29 Jan 2024 Vertebrate Genomes Project 1,027,640,383 21.40 secondary birds 171 GCA_036321565.1 GCA_036321565.1_mCamDro1.hap2 Camelus dromedarius Arabian camel (hap2 2024) 9838 SAMN39296380 haploid (maternal haplotype of diploid) Chromosome 31 Jan 2024 Vertebrate Genomes Project 2,086,495,379 31.48 secondary mammals 172 GCA_036365475.1 GCA_036365475.1_fAmiCal2.hap2 Amia calva bowfin (hap2 2024) 7924 SAMN39643085 haploid Chromosome 05 Feb 2024 Vertebrate Genomes Project 958,875,937 36.24 secondary fish 173 GCA_036365495.1 GCA_036365495.1_sHetFra1.hap2 Heterodontus francisci horn shark (hap2 2024) 7792 SAMN39432692 haploid Chromosome 05 Feb 2024 Vertebrate Genomes Project 5,196,885,747 67.85 secondary sharks 174 GCA_036417435.1 GCA_036417435.1_mIniGeo1.hap1 Inia geoffrensis boutu (hap1 2024) 9725 SAMN32797734 haploid Chromosome 06 Feb 2024 Cetaceans Genome Project 2,749,362,370 42.66 primary mammals 175 GCA_036417475.1 GCA_036417475.1_mIniGeo1.hap2 Inia geoffrensis boutu (hap2 2024) 9725 SAMN32797734 haploid Chromosome 05 Feb 2024 Cetaceans Genome Project 2,540,437,634 41.43 secondary mammals 176 GCA_036417515.1 GCA_036417515.1_bDroNov1.hap2 Dromaius novaehollandiae emu (hap2 2024) 8790 SAMN39262816 haploid Chromosome 26 Feb 2024 Vertebrate Genomes Project 1,359,162,908 26.97 secondary birds 177 GCA_036417535.1 GCA_036417535.1_bChlMac1.mat Chlamydotis macqueenii Macqueen's bustard (maternal hap 2024) 187382 SAMN39296383 haploid (maternal haplotype of diploid) Chromosome 07 Feb 2024 Vertebrate Genomes Project 1,273,933,319 27.09 primary birds 178 GCA_036417895.1 GCA_036417895.1_bPasDom1.hap2 Passer domesticus house sparrow (hap2 2024) 48849 SAMN39255856 haploid Chromosome 01 Feb 2024 Vertebrate Genomes Project 1,260,479,385 31.98 secondary birds 179 GCA_036417975.1 GCA_036417975.1_bAptMan1.hap2 Apteryx mantelli North Island brown kiwi (hap2 2024) 2696672 SAMN39257886 haploid Chromosome 06 Feb 2024 Vertebrate Genomes Project 1,593,539,360 30.47 secondary birds 180 GCA_036418225.1 GCA_036418225.1_bChlMac1.pat Chlamydotis macqueenii Macqueen's bustard (paternal 2024) 187382 SAMN39296383 haploid (paternal haplotype of diploid) Chromosome 07 Feb 2024 Vertebrate Genomes Project 1,106,587,813 25.27 secondary birds 181 GCA_036418255.1 GCA_036418255.1_mEquCab1.mat Equus caballus horse (maternal 2024) 9796 SAMN39296386 haploid (maternal haplotype of diploid) Chromosome 07 Feb 2024 Vertebrate Genomes Project 2,331,848,197 34.70 secondary mammals 182 GCA_036426135.1 GCA_036426135.1_mEquCab1.pat Equus caballus horse (paternal hap 2024) 9796 SAMN39296386 haploid (paternal haplotype of diploid) Chromosome 07 Feb 2024 Vertebrate Genomes Project 2,596,737,506 35.42 primary mammals 183 GCA_036784965.1 GCA_036784965.1_fSalAlp2_p1.0 Salvelinus alpinus oquassa Arctic char (CBP00131 primary hap 2024) 152111 SAMN36900063 haploid (principal pseudohaplotype of diploid) Scaffold 23 Feb 2024 Canada's Genomic Enterprise 2,129,031,653 56.08 primary fish 184 GCA_036850655.1 GCA_036850655.1_bMerOct1.hap2 Mergus octosetaceus Brazilian merganser (hap2 2024) 1570318 SAMN39710078 haploid Chromosome 26 Feb 2024 Vertebrate Genomes Project 1,213,885,900 31.82 secondary birds 185 GCA_036873955.1 GCA_036873955.1_bMerOct1.hap1 Mergus octosetaceus Brazilian merganser (hap1 2024) 1570318 SAMN39710078 haploid Chromosome 26 Feb 2024 Vertebrate Genomes Project 1,245,791,205 28.52 primary birds 186 GCA_036971175.1 GCA_036971175.1_sNarBan1.hap2 Narcine bancroftii Caribbean electric ray (hap2 2024) 1343680 SAMN39325148 haploid Chromosome 06 Mar 2024 Vertebrate Genomes Project 3,110,263,114 52.51 secondary sharks 187 GCA_036971685.2 GCA_036971685.2_bPatFas1.hap2 Patagioenas fasciata band-tailed pigeon (v2 hap2 2025) 372321 SAMN40018840 haploid (haplotype 2) Chromosome 10 Feb 2025 Vertebrate Genomes Project 1,198,742,887 27.42 secondary birds 188 GCA_037038515.1 GCA_037038515.1_mMicPen1.hap1 Microtus pennsylvanicus meadow vole (hap1 2024) 10058 SAMN39894136 haploid Chromosome 06 Mar 2024 Vertebrate Genomes Project 2,369,135,991 41.94 primary mammals 189 GCA_037038545.1 GCA_037038545.1_mRhyNas2.hap1 Rhynchonycteris naso proboscis bat (hap1 2024) 249017 SAMN39947078 haploid Chromosome 06 Mar 2024 Bat1K Project 2,455,066,473 41.49 primary mammals 190 GCA_037038555.1 GCA_037038555.1_mRhyNas2.hap2 Rhynchonycteris naso proboscis bat (hap2 2024) 249017 SAMN39947078 haploid Chromosome 06 Mar 2024 Bat1K Project 2,296,372,838 40.66 secondary mammals 191 GCA_037038625.1 GCA_037038625.1_fFunDia1.hap2 Fundulus diaphanus banded killifish (hap2 2024) 54267 SAMN39736529 haploid Chromosome 06 Mar 2024 Vertebrate Genomes Project 1,329,922,595 50.37 secondary fish 192 GCA_037039145.1 GCA_037039145.1_fFunDia1.hap1 Fundulus diaphanus banded killifish (hap1 2024) 54267 SAMN39736529 haploid Chromosome 06 Mar 2024 Vertebrate Genomes Project 1,351,828,608 50.48 primary fish 193 GCA_037039175.1 GCA_037039175.1_mMicPen1.hap2 Microtus pennsylvanicus meadow vole (hap2 2024) 10058 SAMN39894136 haploid Chromosome 06 Mar 2024 Vertebrate Genomes Project 2,156,400,253 32.15 secondary mammals 194 GCA_037157525.1 GCA_037157525.1_mMolAlv2.hap1 Molossus alvarezi Alvarez's mastiff bat (hap1 2024) 1552295 SAMN40002245 haploid Chromosome 15 Mar 2024 Bat1K Project 2,478,684,717 40.83 primary mammals 195 GCA_037157625.1 GCA_037157625.1_bLatDis1.hap2 Lathamus discolor Swift parrot (hap2 2024) 678569 SAMN40289871 haploid (haplotype 2) Chromosome 15 Mar 2024 Vertebrate Genomes Project 1,123,412,812 26.31 secondary birds 196 GCA_037176705.1 GCA_037176705.1_mMolAlv2.hap2 Molossus alvarezi Alvarez's mastiff bat (hap2 2024) 1552295 SAMN40002245 haploid Chromosome 15 Mar 2024 Bat1K Project 2,504,806,577 41.09 secondary mammals 197 GCA_037176775.1 GCA_037176775.1_rAnoSag1.pat Anolis sagrei Brown anole (rAnoSag1 2024) 38937 SAMN40144551 haploid (paternal haplotype of diploid) Chromosome 15 Mar 2024 Vertebrate Genomes Project 1,727,284,250 44.79 secondary reptiles 198 GCA_037306005.1 GCA_037306005.1_aRhiDor1.hap1 Rhinophrynus dorsalis Mexican burrowing toad (hap1 2024) 43566 SAMN40302865 haploid Chromosome 20 Mar 2024 Vertebrate Genomes Project 4,745,569,335 53.56 primary amphibians 199 GCA_037306015.1 GCA_037306015.1_aRhiDor1.hap2 Rhinophrynus dorsalis Mexican burrowing toad (hap2 2024) 43566 SAMN40302865 haploid Chromosome 20 Mar 2024 Vertebrate Genomes Project 4,535,323,468 53.02 secondary amphibians 200 GCA_037893015.1 GCA_037893015.1_bilby.v1.9.chrom.fasta Macrotis lagotis bilby (mMagLag1 2024) 92651 SAMN39300766 haploid Chromosome 04 Apr 2024 The University of Sydney 3,655,732,635 50.62 primary mammals 201 GCA_037950955.1 GCA_037950955.1_bSarPap1.hap2 Sarcoramphus papa king vulture (hap2 2024) 43583 SAMN40647026 haploid Chromosome 04 Apr 2024 Vertebrate Genomes Project 1,469,241,744 35.57 secondary birds 202 GCA_037962945.1 GCA_037962945.1_bSarPap1.hap1 Sarcoramphus papa king vulture (hap1 2024) 43583 SAMN40647026 haploid Chromosome 04 Apr 2024 Vertebrate Genomes Project 1,543,950,730 32.53 primary birds 203 GCA_038021265.1 GCA_038021265.1_fCypVen1.hap1 Cyprinella venusta blacktail shiner (hap1 2024) 28792 SAMN40647018 haploid Chromosome 08 Apr 2024 Vertebrate Genomes Project 918,162,819 46.85 secondary fish 204 GCA_038024135.1 GCA_038024135.1_fCypVen1.hap2 Cyprinella venusta blacktail shiner (hap2 2024) 28792 SAMN40647018 haploid Chromosome 08 Apr 2024 Vertebrate Genomes Project 928,717,837 47.57 primary fish 205 GCA_038048845.1 GCA_038048845.1_aMixFle1.hap1 Mixophyes fleayi Fleay's barred frog (hap1 2024) 3061075 SAMN39657083 haploid Chromosome 17 Apr 2024 Vertebrate Genomes Project 2,969,628,263 46.39 primary amphibians 206 GCA_038048865.1 GCA_038048865.1_aMixFle1.hap2 Mixophyes fleayi Fleay's barred frog (hap2 2024) 3061075 SAMN39657083 haploid Chromosome 17 Apr 2024 Vertebrate Genomes Project 2,876,209,288 44.69 secondary amphibians 207 GCA_038355195.1 GCA_038355195.1_fOsmMor3.pri Osmerus mordax rainbow smelt (fOsmMor3 primary hap 2024) 8014 SAMN40867348 haploid (principal pseudohaplotype of diploid) Chromosome 17 Apr 2024 Vertebrate Genomes Project 497,673,479 35.25 primary fish 208 GCA_038363095.2 GCA_038363095.2_mArtLit.hap1 Artibeus lituratus great fruit-eating bat (v2 hap1 2024) 27634 SAMN40002247 haploid (haplotype 1) Chromosome 21 May 2024 Bat1K Project 2,311,617,438 34.60 primary mammals 209 GCA_038363145.1 GCA_038363145.1_mArtInt1.hap1 Artibeus intermedius great fruit-eating bat (hap1 2024) 51014 SAMN40002248 haploid Chromosome 22 Apr 2024 Bat1K Project 2,293,600,955 34.66 primary mammals 210 GCA_038363175.2 GCA_038363175.2_mArtLit1.hap2 Artibeus lituratus great fruit-eating bat (mArtLit1hap2 2024) 27634 SAMN40002247 haploid (haplotype 2) Chromosome 17 May 2024 Bat1K Project 2,096,453,601 33.94 secondary mammals 211 GCA_038363225.1 GCA_038363225.1_mArtInt1.hap2 Artibeus intermedius bat A.intermedius (hap2 2024) 51014 SAMN40002248 haploid Chromosome 22 Apr 2024 Bat1K Project 2,080,478,059 33.53 secondary mammals 212 GCA_038501915.1 GCA_038501915.1_aXenPet1.maternal.cur Xenopus petersii Peter's clawed frog (aXenPet1 2024) 288555 SAMN39187339 haploid (maternal haplotype of diploid) Chromosome 29 Apr 2024 Vertebrate Genomes Project 2,613,116,200 44.51 secondary amphibians 213 GCA_038501925.1 GCA_038501925.1_aXenPet1.paternal.cur Xenopus petersii Peter's clawed frog (aXenPet1 2024) 288555 SAMN39187339 haploid (paternal haplotype of diploid) Chromosome 29 Apr 2024 Vertebrate Genomes Project 2,883,796,191 45.47 primary amphibians 214 GCA_039655065.1 GCA_039655065.1_mGloMut1.hap1 Glossophaga mutica Merriam's long-tongued bat (hap1 2024) 2994998 SAMN40946060 haploid (haplotype 1) Chromosome 17 May 2024 Bat1K Project 2,159,908,085 33.78 primary mammals 215 GCA_039656995.1 GCA_039656995.1_mGloMut1.hap2 Glossophaga mutica Merriam's long-tongued bat (hap2 2024) 2994998 SAMN40946060 haploid (haplotype 2) Chromosome 17 May 2024 Bat1K Project 2,156,622,230 32.89 secondary mammals 216 GCA_039720425.1 GCA_039720425.1_bAmaOch1.hap2 Amazona ochrocephala yellow-crowned parrot (bAmaOch1hap2 2024) 151761 SAMN41018448 haploid (haplotype 2) Chromosome 24 May 2024 Vertebrate Genomes Project 1,356,986,306 37.29 secondary birds 217 GCA_039720435.1 GCA_039720435.1_bAmaOch1.hap1 Amazona ochrocephala yellow-crowned parrot (bAmaOch1hap1 2024) 151761 SAMN41018448 haploid (haplotype 1) Chromosome 24 May 2024 Vertebrate Genomes Project 1,361,915,838 30.39 primary birds 218 GCA_039877575.1 GCA_039877575.1_fChaTrf1.hap2 Chaetodon trifascialis chevron butterflyfish (hap2 2024) 109706 SAMN41253346 haploid (haplotype 2) Chromosome 29 May 2024 Vertebrate Genomes Project 664,933,391 24.11 secondary fish 219 GCA_039878515.1 GCA_039878515.1_bCotChi1.hap1 Excalfactoria chinensis bird E.chinensis (hap1 2024) 46218 SAMN41253798 haploid (haplotype 1) Chromosome 29 May 2024 Vertebrate Genomes Project 974,517,173 20.66 secondary birds 220 GCA_039878825.1 GCA_039878825.1_bCotChi1.hap2 Excalfactoria chinensis bird E.chinensis (hap2 2024) 46218 SAMN41253798 haploid (haplotype 2) Chromosome 31 May 2024 Vertebrate Genomes Project 966,847,183 13.01 primary birds 221 GCA_039880925.1 GCA_039880925.1_mMolNig1.hap2 Molossus nigricans northern black mastiff bat (mMolNig1hap2 2024) 2997257 SAMN40002246 haploid (haplotype 2) Chromosome 29 May 2024 Bat1K Project 2,394,902,263 40.28 secondary mammals 222 GCA_039880945.1 GCA_039880945.1_mMolNig1.hap1 Molossus nigricans northern black mastiff bat (mMolNig1hap1 2024) 2997257 SAMN40002246 haploid (haplotype 1) Chromosome 29 May 2024 Bat1K Project 2,567,103,348 42.18 primary mammals 223 GCA_039906465.1 GCA_039906465.1_bAegAlb1.hap2 Aegotheles albertisi bird A.albertisi (hap2 2024) 48277 SAMN41085506 haploid (haplotype 2) Chromosome 30 May 2024 Vertebrate Genomes Project 1,051,698,180 21.38 secondary birds 224 GCA_039906525.1 GCA_039906525.1_mPseCra1.hap2 Pseudorca crassidens false killer whale (hap2 2024) 82174 SAMN41253811 haploid (haplotype 2) Chromosome 31 May 2024 Vertebrate Genomes Project 2,678,530,964 44.18 secondary mammals 225 GCA_039906565.1 GCA_039906565.1_bAegAlb1.hap1 Aegotheles albertisi bird A.albertisi (hap1 2024) 48277 SAMN41085506 haploid (haplotype 1) Chromosome 31 May 2024 Vertebrate Genomes Project 1,167,497,019 12.54 primary birds 226 GCA_040206675.1 GCA_040206675.1_aAscTru1.hap2 Ascaphus truei tailed frog (A.truei hap2 2024) 8439 SAMN41155128 haploid (haplotype 2) Chromosome 17 Jun 2024 Vertebrate Genomes Project 3,660,446,095 55.25 secondary amphibians 227 GCA_040206685.1 GCA_040206685.1_aAscTru1.hap1 Ascaphus truei tailed frog (A.truei hap1 2024) 8439 SAMN41155128 haploid (haplotype 1) Chromosome 17 Jun 2024 Vertebrate Genomes Project 3,722,616,900 55.73 primary amphibians 228 GCA_040805955.1 GCA_040805955.1_T2T-sheep1.0 Ovis aries sheep (hu hu3095 2024) 9940 SAMN38029123 haploid Complete Genome 22 Jul 2024 China Agricultural University 2,853,626,077 44.11 primary mammals 229 GCA_040807015.1 GCA_040807015.1_bStrCam1.hap2 Struthio camelus African ostrich (bStrCam1hap2 2024) 8801 SAMN42123890 haploid (haplotype 2) Chromosome 22 Jul 2024 Vertebrate Genomes Project 1,383,056,266 28.29 secondary birds 230 GCA_040894015.1 GCA_040894015.1_aEngPut4.paternal Engystomops pustulosus Tungara frog (aEngPut4 paternal hap 2024) 76066 SAMN42463661 haploid (paternal haplotype of diploid) Chromosome 30 Jul 2024 Vertebrate Genomes Project 2,081,032,022 52.62 secondary amphibians 231 GCA_040894355.2 GCA_040894355.2_rMyuGeo1.pri Myuchelys georgesi Bellinger river turtle (v2 BRST_UC0152H_USYD 2025) 1041117 SAMN36918804 haploid Chromosome 06 Feb 2025 The University of Sydney 1,980,039,302 26.49 primary reptiles 232 GCA_040939525.1 GCA_040939525.1_ASM4093952v1 Protopterus annectens West African lungfish (Aquariam Glaser DD20220218a primary hap 2024) 7888 SAMN26533844 haploid (principal pseudohaplotype of diploid) Chromosome 01 Aug 2024 The Max Planck Institute of Molecular Cell Biology and Genetics 40,524,173,670 72.73 primary fish 233 GCA_040954595.2 GCA_040954595.2_keBalMisa1.hap2 Saccoglossus sp. HW-2024a hemichordates Saccoglossus HW-2024a (v2 hap2 2025) 3154068 SAMN40579982 haploid (haplotype 2) Chromosome 27 Mar 2025 Southwest University 319,515,952 28.91 secondary invertebrate 234 GCA_040954625.2 GCA_040954625.2_keBalMisa1.hap1 Saccoglossus sp. HW-2024a hemichordates Saccoglossus HW-2024a (v2 hap1 2025) 3154068 SAMN40579982 haploid (haplotype 1) Chromosome 27 Mar 2025 Southwest University 329,694,088 29.27 primary invertebrate 235 GCA_040954845.1 GCA_040954845.1_fLepOcu1.hap1 Lepisosteus oculatus spotted gar (fLepOcu1hap1 2024) 7918 SAMN41155427 haploid (haplotype 1) Chromosome 01 Aug 2024 Vertebrate Genomes Project 1,110,649,520 34.48 secondary fish 236 GCA_040955645.1 GCA_040955645.1_LycPic1.final.hap1 Lycaon pictus African hunting dog (LycPic1hap1 2024) 9622 SAMN36939365 haploid (paternal haplotype of diploid) Chromosome 01 Aug 2024 University of Copenhagen 2,260,356,192 32.97 secondary mammals 237 GCA_040955705.1 GCA_040955705.1_LycPic1.final.hap2 Lycaon pictus African hunting dog (LycPic1hap2 2024) 9622 SAMN36939365 haploid (maternal haplotype of diploid) Chromosome 01 Aug 2024 University of Copenhagen 2,384,012,108 33.73 primary mammals 238 GCA_041735815.1 GCA_041735815.1_T2T-goat2.0 Capra hircus Inner Mongolia cashmere goat (2024) 9925 SAMN41386043 haploid Complete Genome 04 Sep 2024 China Agricultural University 2,863,923,675 44.34 primary mammals 239 GCA_041753875.1 GCA_041753875.1_ASM4175387v1 Acanthopagrus schlegelii black porgy (SG-2024 2024) 72011 SAMN43087228 haploid Complete Genome 05 Sep 2024 ShenZhen University 714,975,658 24.10 primary fish 240 GCA_041834305.1 GCA_041834305.1_ASM4183430v1 Megaptera novaeangliae humpback whale (KW2013002 2024) 9773 SAMN41059645 haploid Chromosome 09 Sep 2024 University of Colorado - Boulder 3,146,604,256 45.16 primary mammals 241 GCA_041902795.1 GCA_041902795.1_ASM4190279v1 Electrophorus electricus electric eel (QZ-2024a 2024) 8005 SAMN42883346 haploid Chromosome 12 Sep 2024 Center for Ecological and Environmental Sciences 833,427,914 42.36 primary fish 242 GCA_041903045.1 GCA_041903045.1_ASM4190304v1 Epinephelus lanceolatus giant grouper (andai-2023 2024) 310571 SAMN41784231 haploid Chromosome 12 Sep 2024 Yellow Sea Fisheries Research Institute 1,089,387,278 33.30 primary fish 243 GCA_042242115.1 GCA_042242115.1_fArrGeo1.hap1 Arripis georgiana Australian ruff (RE-2024a hap1 2024) 3352246 SAMN40589644 haploid (haplotype 1) Chromosome 25 Sep 2024 (n/a) 735,099,811 33.44 secondary fish 244 GCA_042242125.1 GCA_042242125.1_fPemKlu1.hap2 Pempheris klunzingeri rough bullseye (RE-2024b hap2 2024) 3127111 SAMN40589649 haploid (haplotype 2) Chromosome 25 Sep 2024 (n/a) 632,781,980 30.94 secondary fish 245 GCA_042242135.1 GCA_042242135.1_fArrGeo1.hap2 Arripis georgiana Australian ruff (RE-2024a hap2 2024) 3352246 SAMN40589644 haploid (haplotype 2) Chromosome 25 Sep 2024 (n/a) 801,586,327 38.19 primary fish 246 GCA_043161795.1 GCA_043161795.1_mMacNem.hap2 Macaca nemestrina pig-tailed macaque (mMacNem1hap2 2024) 9545 SAMN41827875 haploid (haplotype 2) Chromosome 15 Oct 2024 Vertebrate Genomes Project 2,963,967,802 53.07 secondary mammals 247 GCA_043250625.1 GCA_043250625.1_fSebFas1.pri Sebastes fasciatus Acadian redfish (fSebFas1 primary hap 2024) 394691 SAMN43039489 haploid (principal pseudohaplotype of diploid) Chromosome 17 Oct 2024 Vertebrate Genomes Project 833,835,073 40.13 primary fish 248 GCA_043290065.1 GCA_043290065.1_mRhyPet1.hap2 Rhynchocyon petersi black and rufous elephant shrew (mRhyPet1hap2 2024) 320637 SAMN43274963 haploid (haplotype 2) Chromosome 17 Oct 2024 Vertebrate Genomes Project 5,331,151,070 64.54 secondary mammals 249 GCA_043290085.1 GCA_043290085.1_mRhyPet1.hap1 Rhynchocyon petersi black and rufous elephant shrew (mRhyPet1hap1 2024) 320637 SAMN43274963 haploid (haplotype 1) Chromosome 17 Oct 2024 Vertebrate Genomes Project 5,620,370,870 71.76 primary mammals 250 GCA_043640875.1 GCA_043640875.1_fEnoArm2.hap2 Enoplosus armatus old wife E.armatus (hap2 2024) 215367 SAMN40589647 haploid (haplotype 2) Chromosome 24 Oct 2024 (n/a) 578,326,983 22.89 secondary fish 251 GCA_043727835.1 GCA_043727835.1_ASM4372783v1 Aselliscus stoliczkanus Stoliczka's trident bat (China 2021113_DDA primary hap 2024) 188568 SAMN33370315 haploid (principal pseudohaplotype of diploid) Chromosome 24 Oct 2024 Bat1K 2,268,696,503 40.53 primary mammals 252 GCA_043727955.1 GCA_043727955.1_ASM4372795v1 Hipposideros larvatus bat H.larvatus (China 20210929_DDb primary hap 2024) 175524 SAMN33388264 haploid (principal pseudohaplotype of diploid) Chromosome 24 Oct 2024 Bat1K 2,380,748,055 39.02 secondary mammals 253 GCA_043728065.1 GCA_043728065.1_ASM4372806v1 Rhinolophus affinis intermediate horseshoe bat (China 20211001_DDa primary hap 2024) 59477 SAMN33388345 haploid (principal pseudohaplotype of diploid) Chromosome 24 Oct 2024 Bat1K 2,302,456,897 42.96 primary mammals 254 GCA_043728145.1 GCA_043728145.1_ASM4372814v1 Rhinolophus trifoliatus trefoil horseshoe bat (Malaysia primary hap 2024) 430492 SAMN33421007 haploid (principal pseudohaplotype of diploid) Chromosome 24 Oct 2024 Bat1K 2,232,422,560 40.80 primary mammals 255 GCA_043748575.1 GCA_043748575.1_ASM4374857v1 Rhinolophus perniger lanosus northern woolly horseshoe bat (20210929_DDc primary hap 2024) 3030661 SAMN33438666 haploid (principal pseudohaplotype of diploid) Chromosome 24 Oct 2024 Bat1K 2,185,535,924 39.98 primary mammals 256 GCA_043748645.1 GCA_043748645.1_ASM4374864v1 Mops condylurus Angolan free-tailed bat (Cote d'Ivoire 20210831_DDa 2024) 258863 SAMN33550911 haploid Chromosome 24 Oct 2024 Bat1K 2,209,024,231 36.04 primary mammals 257 GCA_043880285.1 GCA_043880285.1_ASM4388028v1 Doryrhina cyclops cyclops roundleaf bat (Cote d'Ivoire 20210929_DDa primary hap 2024) 249021 SAMN33372470 haploid (principal pseudohaplotype of diploid) Chromosome 28 Oct 2024 Bat1K 2,390,604,663 41.90 primary mammals 258 GCA_043880425.1 GCA_043880425.1_ASM4388042v1 Rhinolophus yonghoiseni Yong Hoi Sen's woolly horseshoe bat (Malaysia 20210929_DDd primary hap 2024) 2952509 SAMN33413875 haploid (principal pseudohaplotype of diploid) Chromosome 28 Oct 2024 Bat1K 2,323,192,134 42.06 primary mammals 259 GCA_043880545.1 GCA_043880545.1_ASM4388054v1 Rhinopoma microphyllum greater mouse-tailed bat (20210906_DDa primary hap 2024) 173903 SAMN33421188 haploid (principal pseudohaplotype of diploid) Chromosome 28 Oct 2024 Bat1K 2,564,586,454 40.30 primary mammals 260 GCA_043880595.1 GCA_043880595.1_ASM4388059v1 Megaderma spasma lesser false vampire bat (Vietnam 20211001_DDb primary hap 2024) 9414 SAMN33550865 haploid (principal pseudohaplotype of diploid) Chromosome 28 Oct 2024 Bat1K 2,124,740,378 35.96 primary mammals 261 GCA_044231645.1 GCA_044231645.1_SynOce1_v1.hap2 Neosynchiropus ocellatus ocellated dragonet (captive hap2 2024) 390378 SAMN43082349 haploid (haplotype 2) Chromosome 04 Nov 2024 University of Copenhagen 471,984,592 21.93 secondary fish 262 GCA_044231665.1 GCA_044231665.1_SynOce1_v1.hap1 Neosynchiropus ocellatus ocellated dragonet (captive hap1 2024) 390378 SAMN43082349 haploid (haplotype 1) Chromosome 04 Nov 2024 University of Copenhagen 470,091,028 21.06 primary fish 263 GCA_044231675.1 GCA_044231675.1_ASM4423167v1 Synchiropus picturatus picturesque dragonet (SynPic1 hap2 2024) 586865 SAMN43082350 haploid (haplotype 2) Chromosome 04 Nov 2024 University of Copenhagen 492,062,741 24.57 primary fish 264 GCA_044231685.1 GCA_044231685.1_ASM4423168v1 Synchiropus picturatus picturesque dragonet (SynPic1 hap1 2024) 586865 SAMN43082350 haploid (haplotype 1) Chromosome 04 Nov 2024 University of Copenhagen 500,467,214 25.26 secondary fish 265 GCA_044704965.1 GCA_044704965.1_sPriJap1.hap2 Pristiophorus japonicus Japanese sawshark (hap2 2024) 55135 SAMN44116980 haploid (haplotype 2) Chromosome 13 Nov 2024 Vertebrate Genomes Project 6,365,258,383 73.82 secondary sharks 266 GCA_045345405.1 GCA_045345405.1_bGuaGua1_haplotype_1 Guaruba guarouba golden parakeet (hap1 2024) 51906 SAMN44514542 haploid (haplotype 1) Chromosome 02 Dec 2024 Genomics of Brazilian Biodiversity 1,366,127,126 30.90 primary birds 267 GCA_045345505.1 GCA_045345505.1_bMorGui1_haplotype_1 Morphnus guianensis crested eagle (hap1 2024) 252789 SAMN44513986 haploid (haplotype 1) Chromosome 02 Dec 2024 Instituto Tecnologico Vale 1,316,595,704 28.17 secondary birds 268 GCA_045345515.1 GCA_045345515.1_bMorGui1_haplotype_2 Morphnus guianensis crested eagle (hap2 2024) 252789 SAMN44513986 haploid (haplotype 2) Chromosome 02 Dec 2024 Instituto Tecnologico Vale 1,576,624,229 33.65 primary birds 269 GCA_045362485.1 GCA_045362485.1_fLetNeb1.hap2 Lethrinus nebulosus spangled emperor (hap2 2024) 182658 SAMN40589648 haploid (haplotype 2) Chromosome 26 Nov 2024 (n/a) 1,122,130,221 29.19 secondary fish 270 GCA_045362495.1 GCA_045362495.1_fLetNeb1.hap1 Lethrinus nebulosus spangled emperor (hap1 2024) 182658 SAMN40589648 haploid (haplotype 1) Chromosome 26 Nov 2024 (n/a) 1,133,212,262 29.01 primary fish 271 GCA_045363885.1 GCA_045363885.1_fPriTyp1.hap2 Pristipomoides typus sharptooth jobfish (hap2 2024) 264210 SAMN40589651 haploid (haplotype 2) Chromosome 26 Nov 2024 (n/a) 1,146,345,582 35.15 secondary fish 272 GCA_045363895.1 GCA_045363895.1_fPriTyp1.hap1 Pristipomoides typus sharptooth jobfish (hap1 2024) 264210 SAMN40589651 haploid (haplotype 1) Chromosome 26 Nov 2024 (n/a) 1,147,302,341 35.20 primary fish 273 GCA_045364785.1 GCA_045364785.1_rPodExp1_haplotype_1 Podocnemis expansa giant South American river turtle (hap1 2024) 44507 SAMN44516642 haploid (haplotype 1) Chromosome 02 Dec 2024 Genomics of Brazilian Biodiversity 2,642,177,504 35.53 secondary reptiles 274 GCA_045364795.1 GCA_045364795.1_bWilVid1_haplotype_1 Willisornis vidua Xingu scale-backed antbird (hap1 2024) 1566151 SAMN44516465 haploid (haplotype 1) Chromosome 02 Dec 2024 Genomics of Brazilian Biodiversity 1,233,406,177 26.66 primary birds 275 GCA_045364805.1 GCA_045364805.1_bWilVid1_haplotype_2 Willisornis vidua Xingu scale-backed antbird (hap2 2024) 1566151 SAMN44516465 haploid (haplotype 2) Chromosome 02 Dec 2024 Genomics of Brazilian Biodiversity 1,070,918,723 23.10 secondary birds 276 GCA_045364815.1 GCA_045364815.1_rPodExp1_haplotype_2 Podocnemis expansa giant South American river turtle (hap2 2024) 44507 SAMN44516642 haploid (haplotype 2) Chromosome 02 Dec 2024 Genomics of Brazilian Biodiversity 2,565,358,608 33.86 primary reptiles 277 GCA_045519325.1 GCA_045519325.1_bGuaGua1_haplotype_2 Guaruba guarouba golden parakeet (hap2 2024) 51906 SAMN44514542 haploid (haplotype 2) Chromosome 02 Dec 2024 Genomics of Brazilian Biodiversity 1,190,219,310 29.43 secondary birds 278 GCA_045781085.1 GCA_045781085.1_rPanTec1.hap2 Pangshura tecta Indian roofed turtle (hap2 2024) 260642 SAMN43277916 haploid Chromosome 06 Dec 2024 Vertebrate Genomes Project 2,174,585,695 32.71 primary reptiles 279 GCA_045781095.1 GCA_045781095.1_rPanTec1.hap1 Pangshura tecta Indian roofed turtle (hap1 2024) 260642 SAMN43277916 haploid Chromosome 06 Dec 2024 Vertebrate Genomes Project 2,165,924,875 32.52 secondary reptiles 280 GCA_045843765.1 GCA_045843765.1_mUroPar1.hap2 Urocitellus parryii Arctic ground squirrel (hap2 2024) 9999 SAMN44461866 haploid (haplotype 2) Chromosome 12 Dec 2024 Vertebrate Genomes Project 2,750,197,790 35.97 secondary mammals 281 GCA_045843805.1 GCA_045843805.1_mUroPar1.hap1 Urocitellus parryii Arctic ground squirrel (hap1 2024) 9999 SAMN44461866 haploid (haplotype 1) Chromosome 13 Dec 2024 Vertebrate Genomes Project 2,935,792,869 36.47 primary mammals 282 GCA_046126795.1 GCA_046126795.1_rDibSmi1.hap1 Dibamus cf. smithi lizards D.cf. smithi (hap1 2024) 3379902 SAMN44704469 haploid (haplotype 1) Chromosome 13 Dec 2024 Vertebrate Genomes Project 2,282,721,590 44.05 primary reptiles 283 GCA_046126825.1 GCA_046126825.1_rDibSmi1.hap2 Dibamus cf. smithi lizards D.cf. smithi (hap2 2024) 3379902 SAMN44704469 haploid (haplotype 2) Chromosome 13 Dec 2024 Vertebrate Genomes Project 1,821,555,219 42.57 secondary reptiles 284 GCA_046129645.1 GCA_046129645.1_bCyaCrs1.hap2 Cyanocitta cristata blue jay (hap2 2024) 28727 SAMN44574712 haploid (haplotype 2) Chromosome 17 Dec 2024 Vertebrate Genomes Project 1,195,662,530 29.11 secondary birds 285 GCA_046129655.1 GCA_046129655.1_bCyaCrs1.hap1 Cyanocitta cristata blue jay (hap1 2024) 28727 SAMN44574712 haploid (haplotype 1) Chromosome 17 Dec 2024 Vertebrate Genomes Project 1,227,176,437 25.18 primary birds 286 GCA_046129695.1 GCA_046129695.1_bLonStr1.mat Lonchura striata white-rumped munia (maternal hap 2024) 40157 SAMN44779081 haploid (maternal haplotype of diploid) Chromosome 17 Dec 2024 Vertebrate Genomes Project 1,207,550,942 27.72 primary birds 287 GCA_046129705.1 GCA_046129705.1_bLonStr1.pat Lonchura striata white-rumped munia (paternal hap 2024) 40157 SAMN44779081 haploid (paternal haplotype of diploid) Chromosome 17 Dec 2024 Vertebrate Genomes Project 1,195,923,327 27.62 secondary birds 288 GCA_046255685.1 GCA_046255685.1_fAmbSpe1.hap1 Amblyopsis spelaea northern cavefish (hap1 2024) 1195602 SAMN45063415 haploid Chromosome 23 Dec 2024 Vertebrate Genomes Project 817,459,139 49.51 primary fish 289 GCA_046255725.1 GCA_046255725.1_fAmbSpe1.hap2 Amblyopsis spelaea northern cavefish (hap2 2024) 1195602 SAMN45063415 haploid Chromosome 23 Dec 2024 Vertebrate Genomes Project 865,090,090 52.00 secondary fish 290 GCA_046562875.1 GCA_046562875.1_mPanOnc1_haplotype_2 Panthera onca jaguar (hap2 2025) 9690 SAMN44524170 haploid (haplotype 2) Chromosome 08 Jan 2025 Genomics of Brazilian Biodiversity 2,487,960,463 41.80 secondary mammals 291 GCA_046562885.1 GCA_046562885.1_mPanOnc1_haplotype_1 Panthera onca jaguar (hap1 2025) 9690 SAMN44524170 haploid (haplotype 1) Chromosome 08 Jan 2025 Genomics of Brazilian Biodiversity 2,303,345,105 41.30 primary mammals 292 GCA_046562895.1 GCA_046562895.1_mTriInu1_haplotype_2 Trichechus inunguis Amazon manatee (hap2 2025) 9777 SAMN44524440 haploid (haplotype 2) Chromosome 08 Jan 2025 Genomics of Brazilian Biodiversity 3,320,339,069 57.34 primary mammals 293 GCA_046562985.1 GCA_046562985.1_mTriInu1_haplotype_1 Trichechus inunguis Amazon manatee (hap1 2025) 9777 SAMN44524440 haploid (haplotype 1) Chromosome 08 Jan 2025 Genomics of Brazilian Biodiversity 3,071,794,592 56.95 secondary mammals 294 GCA_047301625.1 GCA_047301625.1_ASM4730162v1 Choerodon schoenleinii blackspot tuskfish (SL-2024 2025) 241275 SAMN46014618 haploid Chromosome 30 Jan 2025 Guangdong Ocean University 865,958,939 30.05 primary fish 295 GCA_047511565.1 GCA_047511565.1_fPolLow2.hap1 Polymixia lowei beardfish (hap1 2025) 143326 SAMN45134564 haploid (haplotype 1) Chromosome 10 Feb 2025 Vertebrate Genomes Project 675,344,950 30.33 primary fish 296 GCA_047511595.1 GCA_047511595.1_fPolLow2.hap2 Polymixia lowei beardfish (hap2 2025) 143326 SAMN45134564 haploid (haplotype 2) Chromosome 10 Feb 2025 Vertebrate Genomes Project 671,709,512 30.40 secondary fish 297 GCA_047511605.1 GCA_047511605.1_mCasCan1.hap2 Castor canadensis American beaver (hap2 2025) 51338 SAMN45812786 haploid (haplotype 2) Chromosome 10 Feb 2025 Vertebrate Genomes Project 2,764,863,784 35.89 secondary mammals 298 GCA_047511655.1 GCA_047511655.1_mCasCan1.hap1 Castor canadensis American beaver (hap1 2025) 51338 SAMN45812786 haploid (haplotype 1) Chromosome 10 Feb 2025 Vertebrate Genomes Project 2,828,089,101 35.39 primary mammals 299 GCA_047512175.1 GCA_047512175.1_mMarFla1.hap2 Marmota flaviventris yellow-bellied marmot (hap2 2025) 93162 SAMN45932315 haploid (haplotype 2) Chromosome 10 Feb 2025 Vertebrate Genomes Project 2,467,036,054 33.41 secondary mammals 300 GCA_047715955.1 GCA_047715955.1_rBraPum1.hap2 Bradypodion pumilum lizards B.pumilum (Western Cape Province hap2 2025) 179887 SAMN35825189 haploid Chromosome 11 Feb 2025 Vertebrate Genomes Project 2,479,053,460 56.66 secondary reptiles 301 GCA_047715975.1 GCA_047715975.1_rBraPum1.hap1 Bradypodion pumilum lizards B.pumilum (Western Cape Province hap1 2025) 179887 SAMN35825189 haploid Chromosome 11 Feb 2025 Vertebrate Genomes Project 2,467,904,324 56.48 primary reptiles 302 GCA_047774235.1 GCA_047774235.1_bZonAlb1.hap2 Zonotrichia albicollis white-throated sparrow (hap2 2025) 44394 SAMN46390924 haploid (haplotype 2) Chromosome 18 Feb 2025 Vertebrate Genomes Project 1,176,404,578 27.21 secondary birds 303 GCA_047830755.1 GCA_047830755.1_bZonAlb1.hap1 Zonotrichia albicollis white-throated sparrow (hap1 2025) 44394 SAMN46390924 haploid (haplotype 1) Chromosome 18 Feb 2025 Vertebrate Genomes Project 1,278,938,765 24.31 primary birds 304 GCA_047922975.1 GCA_047922975.1_bEudEle1_v1.hap2 Eudromia elegans elegant crested-tinamou (YG026_01 alternate hap 2025) 8805 SAMN46865137 alternate-pseudohaplotype Chromosome 20 Feb 2025 University of Copenhagen 965,723,864 23.99 secondary birds 305 GCA_047922985.1 GCA_047922985.1_bEudEle1_v1.hap1 Eudromia elegans elegant crested-tinamou (YG026_01 primary hap 2025) 8805 SAMN46865137 haploid (principal pseudohaplotype of diploid) Chromosome 20 Feb 2025 University of Copenhagen 1,109,691,113 13.96 primary birds 306 GCA_048126345.1 GCA_048126345.1_UniMelb_NotTyph_v1.0 Notoryctes typhlops marsupial mole (Waite Creek area ABTC07570 2025) 37699 SAMN45131536 haploid Scaffold 26 Feb 2025 Oz Mammals Genomics 3,845,140,558 47.20 primary mammals 307 GCA_048126635.1 GCA_048126635.1_SpiSpi1_v1.hap1 Spinachia spinachia sea stickleback (SK-2024b hap1 2025) 206126 SAMN36735485 haploid (haplotype 1) Chromosome 27 Feb 2025 University of Copenhagen 407,561,107 14.07 primary fish 308 GCA_048126745.1 GCA_048126745.1_DamDam1_v1.mat Dama dama fallow deer (maternal hap SK-2024 2025) 30532 SAMN36735489 haploid (maternal haplotype of diploid) Chromosome 27 Feb 2025 University of Copenhagen 2,723,325,442 41.57 primary mammals 309 GCA_048127045.1 GCA_048127045.1_DamDam1_v1.pat Dama dama fallow deer (paternal hap SK-2024 2025) 30532 SAMN36735489 haploid (paternal haplotype of diploid) Chromosome 27 Feb 2025 University of Copenhagen 2,380,677,270 38.56 secondary mammals 310 GCA_048127205.1 GCA_048127205.1_SpiSpi1_v1.hap2 Spinachia spinachia sea stickleback (SK-2024b hap2 2025) 206126 SAMN36735485 haploid (haplotype 2) Chromosome 27 Feb 2025 University of Copenhagen 406,020,468 23.19 secondary fish 311 GCA_048128715.1 GCA_048128715.1_fSymNem1.1_haplotype_2 Symphorus nematophorus chinamanfish (OG11 2025) 396798 SAMN41179601 haploid (haplotype 2) Chromosome 28 Feb 2025 Minderoo OceanOmics Centre at University of the Western Australia 1,079,709,985 46.06 secondary fish 312 GCA_048128725.1 GCA_048128725.1_fSymNem1.1_haplotype_1 Symphorus nematophorus chinamanfish (OG11 2025) 396798 SAMN41179601 haploid (haplotype 1) Chromosome 28 Feb 2025 Minderoo OceanOmics Centre at University of the Western Australia 1,079,363,760 32.88 primary fish 313 GCA_048128805.1 GCA_048128805.1_fCenGer3.hap1.cur.20231027 Centroberyx gerrardi bight redfish (hap1 2025) 166262 SAMN41769328 haploid (haplotype 1) Chromosome 28 Feb 2025 Minderoo OceanOmics Centre at University of the Western Australia 779,177,424 31.86 primary fish 314 GCA_048129025.1 GCA_048129025.1_fCaeTer1.1_haplotype_2 Caesio teres yellow and blueback fusilier (OG672 2025) 1311420 SAMN41769331 haploid (haplotype 2) Chromosome 28 Feb 2025 Minderoo OceanOmics Centre at University of the Western Australia 1,033,416,279 31.40 secondary fish 315 GCA_048129055.1 GCA_048129055.1_fCaeTer1.1_haplotype_1 Caesio teres yellow and blueback fusilier (OG672 2025) 1311420 SAMN41769331 haploid (haplotype 1) Chromosome 28 Feb 2025 (n/a) 1,078,118,487 33.44 primary fish 316 GCA_048129065.1 GCA_048129065.1_fEpiMut1.hap2.cur.20240206 Epinephelus rankini Rankin cod (hap2 2025) 2930458 SAMN41769322 haploid (haplotype 2) Chromosome 28 Feb 2025 Minderoo OceanOmics Centre at University of the Western Australia 1,018,963,042 42.18 secondary fish 317 GCA_048129085.1 GCA_048129085.1_fCenGer3.hap2.cur.20231027 Centroberyx gerrardi bight redfish (hap2 2025) 166262 SAMN41769328 haploid (haplotype 2) Chromosome 28 Feb 2025 Minderoo OceanOmics Centre at University of the Western Australia 774,057,239 32.03 secondary fish 318 GCA_048129235.1 GCA_048129235.1_fEpiMut1.hap1.cur.20240206 Epinephelus rankini Rankin cod (hap1 2025) 2930458 SAMN41769322 haploid (haplotype 1) Chromosome 28 Feb 2025 Minderoo OceanOmics Centre at University of the Western Australia 1,035,398,499 31.27 primary fish 319 GCA_048164845.1 GCA_048164845.1_mCanLup2.hap2 Canis lupus baileyi Mexican gray wolf (hap2 2025) 143281 SAMN46796784 haploid (haplotype 2) Chromosome 27 Feb 2025 Vertebrate Genomes Project 2,336,397,564 34.24 secondary mammals 320 GCA_048301445.1 GCA_048301445.1_SynTyp1_v1.hap1 Syngnathus typhle broad-nosed pipefish (SK-2024d hap1 2025) 161592 SAMN36735486 haploid (haplotype 1) Chromosome 03 Mar 2025 University of Copenhagen 368,300,239 36.58 primary fish 321 GCA_048301465.1 GCA_048301465.1_ASM4830146v1 Aulostomus maculatus trumpetfish (SK-2024c 2025) 150449 SAMN43082348 haploid (haplotype 1) Chromosome 03 Mar 2025 University of Copenhagen 662,945,422 26.05 primary fish 322 GCA_048301475.1 GCA_048301475.1_ASM4830147v1 Aulostomus maculatus trumpetfish (SK-2024c 2025) 150449 SAMN43082348 haploid (haplotype 2) Chromosome 03 Mar 2025 University of Copenhagen 669,846,493 26.80 secondary fish 323 GCA_048301585.1 GCA_048301585.1_ASM4830158v1 Rhinogobio nasutus bony fish R.nasutus (DBWJ_T2T 2025) 2590489 SAMN45903276 haploid Chromosome 03 Mar 2025 Gansu Fisheries Research Institute 953,377,980 45.29 primary fish 324 GCA_048301605.1 GCA_048301605.1_SynTyp1_v1.hap2 Syngnathus typhle broad-nosed pipefish (SK-2024d hap2 2025) 161592 SAMN36735486 haploid (haplotype 2) Chromosome 03 Mar 2025 University of Copenhagen 356,339,685 34.73 secondary fish 325 GCA_048338725.1 GCA_048338725.1_T2T_pig1.0 Sus scrofa pig (Wuzhishan WZS1 2025) 9823 SAMN42780387 haploid Complete Genome 05 Mar 2025 Chian Agricultural University 2,633,166,191 39.57 primary mammals 326 GCA_048537225.1 GCA_048537225.1_ASM4853722v1 Polymixia cf. hollisterae Bermuda beardfish (OG660 hap1 2025) 3239838 SAMN42899157 haploid (haplotype 1) Chromosome 10 Mar 2025 Minderoo OceanOmics Centre at University of the Western Australia 722,757,191 32.95 primary fish 327 GCA_048537235.1 GCA_048537235.1_ASM4853723v1 Polymixia cf. hollisterae Bermuda beardfish (OG660 hap2 2025) 3239838 SAMN42899157 haploid (haplotype 2) Chromosome 10 Mar 2025 Minderoo OceanOmics Centre at University of the Western Australia 707,857,291 32.19 secondary fish 328 GCA_048544195.1 GCA_048544195.1_ASM4854419v1 Menidia menidia Atlantic silverside (fMenMen1 hap2 2025) 238744 SAMN46987722 haploid Chromosome 11 Mar 2025 University of Copenhagen 553,547,304 28.19 secondary fish 329 GCA_048544215.1 GCA_048544215.1_fCoiMys1.hap1 Coilia mystus Osbeck's grenadier anchovy (Shantou hap1 2025) 286537 SAMN46980313 haploid Chromosome 11 Mar 2025 University of Copenhagen 803,134,922 38.65 secondary fish 330 GCA_048544225.1 GCA_048544225.1_fCoiMys1.hap2 Coilia mystus Osbeck's grenadier anchovy (Shantou hap2 2025) 286537 SAMN46980313 haploid Chromosome 11 Mar 2025 University of Copenhagen 854,254,650 38.31 primary fish 331 GCA_048565335.1 GCA_048565335.1_aManAur1.hap2 Mantella aurantiaca golden mantella (hap2 2025) 43514 SAMN46714743 haploid (haplotype 2) Chromosome 12 Mar 2025 Vertebrate Genomes Project 3,319,283,846 62.55 secondary amphibians 332 GCA_048565345.1 GCA_048565345.1_aManAur1.hap1 Mantella aurantiaca golden mantella (hap1 2025) 43514 SAMN46714743 haploid (haplotype 1) Chromosome 12 Mar 2025 Vertebrate Genomes Project 3,336,112,499 62.16 primary amphibians 333 GCA_048565385.1 GCA_048565385.1_mSaiBol1.pri Saimiri boliviensis Bolivian squirrel monkey (mSaiBol1 primary hap 2025) 27679 SAMN46760316 haploid Chromosome 12 Mar 2025 Vertebrate Genomes Project 2,747,476,440 47.03 primary mammals 334 GCA_048569125.1 GCA_048569125.1_fDirArg3.hap1 Diretmus argenteus silver spinyfin (hap1 2025) 88682 SAMN47248252 haploid (haplotype 1) Chromosome 13 Mar 2025 Vertebrate Genomes Project 1,517,026,147 53.60 primary fish 335 GCA_048569135.1 GCA_048569135.1_fDirArg3.hap2 Diretmus argenteus silver spinyfin (hap2 2025) 88682 SAMN47248252 haploid (haplotype 2) Scaffold 13 Mar 2025 Vertebrate Genomes Project 1,884,132,620 55.04 secondary fish 336 GCA_048569465.1 GCA_048569465.1_aAnoBae1.hap2 Anomaloglossus baeobatrachus frog A.baeobatrachus (hap2 2025) 238106 SAMN46966667 haploid (haplotype 2) Chromosome 13 Mar 2025 Vertebrate Genomes Project 6,129,031,283 77.32 secondary amphibians 337 GCA_048569485.1 GCA_048569485.1_aAnoBae1.hap1 Anomaloglossus baeobatrachus frog A.baeobatrachus (hap1 2025) 238106 SAMN46966667 haploid (haplotype 1) Chromosome 13 Mar 2025 Vertebrate Genomes Project 6,265,077,250 77.47 primary amphibians 338 GCA_048593225.1 GCA_048593225.1_ASM4859322v1 Sarcophilus harrisii Tasmanian devil (McLovin hap1 2025) 9305 SAMN47327921 haploid (haplotype 1) Chromosome 17 Mar 2025 University of Connecticut 3,244,907,618 42.27 primary mammals 339 GCA_048593235.1 GCA_048593235.1_ASM4859323v1 Sminthopsis crassicaudata fat-tailed dunnart (SCR6 hap1 2025) 9301 SAMN47327922 haploid (haplotype 1) Chromosome 17 Mar 2025 University of Connecticut 3,239,981,553 44.27 primary mammals 340 GCA_048593245.1 GCA_048593245.1_ASM4859324v1 Dasyurus maculatus spotted-tailed quoll (Chaos hap2 2025) 9281 SAMN47326980 haploid (haplotype 2) Chromosome 17 Mar 2025 University of Connecticut 3,066,144,370 42.02 secondary mammals 341 GCA_048593285.1 GCA_048593285.1_ASM4859328v1 Dasyurus maculatus spotted-tailed quoll (Chaos hap1 2025) 9281 SAMN47326980 haploid (haplotype 1) Chromosome 17 Mar 2025 University of Connecticut 3,043,210,118 41.99 primary mammals 342 GCA_048593295.1 GCA_048593295.1_ASM4859329v1 Sminthopsis crassicaudata fat-tailed dunnart (SCR6 hap2 2025) 9301 SAMN47327922 haploid (haplotype 2) Chromosome 17 Mar 2025 University of Connecticut 3,272,501,082 44.21 secondary mammals 343 GCA_048593325.1 GCA_048593325.1_ASM4859332v1 Sarcophilus harrisii Tasmanian devil (McLovin hap2 2025) 9305 SAMN47327921 haploid (haplotype 2) Chromosome 17 Mar 2025 University of Connecticut 3,116,321,655 41.45 secondary mammals 344 GCA_048593335.1 GCA_048593335.1_ASM4859333v1 Notamacropus eugenii tammar wallaby (Barry hap1 2025) 9315 SAMN47327929 haploid (haplotype 1) Chromosome 17 Mar 2025 University of Connecticut 3,349,423,305 39.00 secondary mammals 345 GCA_048593345.1 GCA_048593345.1_ASM4859334v1 Notamacropus eugenii tammar wallaby (Barry hap2 2025) 9315 SAMN47327929 haploid (haplotype 2) Chromosome 17 Mar 2025 University of Connecticut 3,250,186,738 38.97 secondary mammals 346 GCA_048628825.1 GCA_048628825.1_ASM4862882v1 Menidia menidia Atlantic silverside (fMenMen1 hap1 2025) 238744 SAMN46987722 haploid (haplotype 1) Chromosome 19 Mar 2025 University of Copenhagen 571,276,089 28.90 primary fish 347 GCA_048771865.1 GCA_048771865.1_mCteGun2.hap2 Ctenodactylus gundi northern gundi (hap2 2025) 10166 SAMN47326412 haploid (haplotype 2) Chromosome 21 Mar 2025 Vertebrate Genomes Project 2,329,663,899 34.10 secondary mammals 348 GCA_048771875.1 GCA_048771875.1_mCteGun2.hap1 Ctenodactylus gundi northern gundi (hap1 2025) 10166 SAMN47326412 haploid (haplotype 1) Chromosome 21 Mar 2025 Vertebrate Genomes Project 2,184,404,205 30.65 primary mammals 349 GCA_048771995.1 GCA_048771995.1_bTaeGut7.mat Taeniopygia guttata zebra finch (bTaeGut7 maternal hap 2025) 59729 SAMN47142318 haploid (maternal haplotype of diploid) Chromosome 21 Mar 2025 Vertebrate Genomes Project 1,141,165,377 23.56 primary birds 350 GCA_048772025.1 GCA_048772025.1_bTaeGut7.pat Taeniopygia guttata zebra finch (bTaeGut7 paternal hap 2025) 59729 SAMN47142318 haploid (paternal haplotype of diploid) Chromosome 21 Mar 2025 Vertebrate Genomes Project 1,021,668,102 22.87 secondary birds 351 GCA_048772815.1 GCA_048772815.1_mCalLat2.hap1 Callospermophilus lateralis golden-mantled ground squirrel (hap1 2025) 76772 SAMN47326584 haploid (haplotype 1) Chromosome 21 Mar 2025 Vertebrate Genomes Project 4,646,974,320 52.74 primary mammals 352 GCA_048772825.1 GCA_048772825.1_mCalLat2.hap2 Callospermophilus lateralis golden-mantled ground squirrel (hap2 2025) 76772 SAMN47326584 haploid (haplotype 2) Chromosome 21 Mar 2025 Vertebrate Genomes Project 3,349,745,798 39.54 secondary mammals 353 GCA_048934315.1 GCA_048934315.1_UKy_Petmar_22M1.pri1.0 Petromyzon marinus sea lamprey (Great Lakes invasive population PM22_M1 primary hap 2025) 7757 SAMN46926778 haploid (principal pseudohaplotype of diploid) Chromosome 25 Mar 2025 University of Kentucky 1,808,332,251 68.15 primary otherChordates 354 GCA_049082045.1 GCA_049082045.1_fCriAus1.1_haplotype_2 Cristiceps australis crested weedfish (hap2 OG76 2025) 879810 SAMN40589650 haploid (haplotype 2) Chromosome 27 Mar 2025 (n/a) 559,096,705 29.02 secondary fish 355 GCA_049082185.1 GCA_049082185.1_fCriAus1.1_haplotype_1 Cristiceps australis crested weedfish (hap1 OG76 2025) 879810 SAMN40589650 haploid (haplotype 1) Chromosome 27 Mar 2025 (n/a) 619,674,967 29.97 primary fish 356 GCA_049190655.1 GCA_049190655.1_fLepSal2.hap2 Lepidogalaxias salamandroides salamanderfish (hap2 2025) 89578 SAMN47481373 haploid (haplotype 2) Chromosome 31 Mar 2025 Vertebrate Genomes Project 742,016,821 45.23 secondary fish 357 GCA_049190665.1 GCA_049190665.1_fLepSal2.hap1 Lepidogalaxias salamandroides salamanderfish (hap1 2025) 89578 SAMN47481373 haploid (haplotype 1) Chromosome 31 Mar 2025 Vertebrate Genomes Project 735,065,728 43.46 primary fish 358 GCA_049354655.1 GCA_049354655.1_calJac240_alt Callithrix jacchus white-tufted-ear marmoset (240 alternate hap 2025) 9483 SAMN47004743 alternate-pseudohaplotype Chromosome 08 Apr 2025 University of California Santa Cruz 2,760,247,778 47.02 secondary mammals 359 GCA_049354715.1 GCA_049354715.1_calJac240_pri Callithrix jacchus white-tufted-ear marmoset (240 primary hap 2025) 9483 SAMN47004743 haploid (principal pseudohaplotype of diploid) Chromosome 08 Apr 2025 University of California Santa Cruz 2,933,409,465 42.34 primary mammals 360 GCA_900246225.5 GCA_900246225.5_fAstCal1.3 Astatotilapia calliptera eastern happy (v3 2021) 8154 SAMEA104026430 haploid Chromosome 24 Apr 2021 Wellcome Sanger Institute 880,445,568 35.92 secondary fish 361 GCA_901001165.2 GCA_901001165.2_fSalTru1.2 Salmo trutta river trout (v2 2021) 8032 SAMEA994732 haploid Chromosome 24 Apr 2021 Wellcome Sanger Institute 2,371,880,186 55.89 primary fish 362 GCA_901699155.2 GCA_901699155.2_bStrTur1.2 Streptopelia turtur European turtle dove (v1.2 2021) 177155 SAMEA994735 haploid (principal pseudohaplotype of diploid) Chromosome 17 May 2021 Wellcome Sanger Institute 1,178,816,852 10.95 primary birds 363 GCA_901765095.2 GCA_901765095.2_aMicUni1.2 Microcaecilia unicolor tiny Cayenne caecilian (v2 2021) 1415580 SAMEA104387962 haploid Chromosome 24 Apr 2021 Wellcome Sanger Institute 4,685,939,421 68.19 primary amphibians 364 GCA_902686455.2 GCA_902686455.2_mSciVul1.2 Sciurus vulgaris Eurasian red squirrel (v1.2 2020) 55149 SAMEA994733 haploid Chromosome 31 Jul 2020 SC 2,878,607,543 33.75 primary mammals 365 GCA_902713435.2 GCA_902713435.2_fAciRut3.2_paternal_haplotype Acipenser ruthenus sterlet (v2 paternal hap 2022) 7906 SAMEA5572864 haploid Chromosome 01 Feb 2022 Wellcome Sanger Institute 1,882,648,115 45.08 secondary fish 366 GCA_903684855.2 GCA_903684855.2_fDreTuH1.2 Danio rerio zebrafish (WGS:CAHPTB02 2020) 7955 SAMEA4760849 haploid Chromosome 31 Jul 2020 SC 1,360,506,095 60.94 secondary fish 367 GCA_903684865.1 GCA_903684865.1_fDreABH1.1 Danio rerio zebrafish (WGS:CAHPTA01 2020) 7955 SAMEA4760846 haploid Chromosome 28 Jun 2020 SC 1,354,075,779 61.16 secondary fish 368 GCA_903797595.2 GCA_903797595.2_bEriRub2.2 Erithacus rubecula European robin (primary hap 2021) 37610 SAMEA4760689 haploid (principal pseudohaplotype of diploid) Chromosome 03 May 2021 Wellcome Sanger Institute 1,086,738,418 15.04 primary birds 369 GCA_903992545.1 GCA_903992545.1_mPipPip1.1 Pipistrellus pipistrellus common pipistrelle (2020) 59474 SAMEA994724 haploid Chromosome 06 Aug 2020 SC 1,763,439,233 32.92 primary mammals 370 GCA_905171665.2 GCA_905171665.2_fTraTra1.2 Trachurus trachurus Atlantic horse mackerel (primary hap 2021) 36212 SAMEA7524396 haploid Chromosome 26 Nov 2021 Wellcome Sanger Institute 801,243,942 32.88 primary fish 371 GCA_905319855.2 GCA_905319855.2_mCanLor1.2 Canis lupus gray wolf (2021) 9612 SAMEA7532739 haploid Chromosome 26 Mar 2021 WELLCOME SANGER INSTITUTE 2,447,463,909 33.04 primary mammals 372 GCA_907165065.1 GCA_907165065.1_bCapEur3.1 Caprimulgus europaeus Eurasian nightjar (primary hap 2021) 111811 SAMEA7524394 haploid (principal pseudohaplotype of diploid) Chromosome 17 May 2021 WELLCOME SANGER INSTITUTE 1,177,791,212 12.03 primary birds 373 GCA_910589615.1 GCA_910589615.1_fTauBub2.1 Taurulus bubalis longspined bullhead (.1 primary hap 2021) 61643 SAMEA7522994 haploid (principal pseudohaplotype of diploid) Chromosome 07 Jul 2021 WELLCOME SANGER INSTITUTE 615,153,901 25.23 primary fish 374 GCA_910591455.2 GCA_910591455.2_fPhoGun1.2 Pholis gunnellus rock gunnel (primary hap 2021) 56726 SAMEA7522838 haploid (principal pseudohaplotype of diploid) Chromosome 18 Nov 2021 WELLCOME SANGER INSTITUTE 588,696,950 25.63 primary fish 375 GCA_918807975.1 GCA_918807975.1_kaAplTurb1.1 Aplidium turbinatum tunicate A.turbinatum (primary hap 2021) 2771288 SAMEA7536566 haploid (principal pseudohaplotype of diploid) Chromosome 19 Nov 2021 WELLCOME SANGER INSTITUTE 605,507,883 63.38 primary otherChordates 376 GCA_922990625.1 GCA_922990625.1_mMelMel3.1_maternal_haplotype_uncurated Meles meles Eurasian badger (2021) 9662 SAMEA7524400 haploid Scaffold 18 Dec 2021 WELLCOME SANGER INSTITUTE 2,692,729,365 37.43 secondary mammals 377 GCA_933228915.1 GCA_933228915.1_fTelBon1.1 Telmatherina bonti bonti-bonti (primary hap 2022) 446457 SAMEA8592627 haploid (principal pseudohaplotype of diploid) Chromosome 23 Mar 2022 WELLCOME SANGER INSTITUTE 986,039,709 34.07 primary fish 378 GCA_936440315.1 GCA_936440315.1_fBarBab1.1 Barbus barbus barbel (primary hap 2022) 40830 SAMEA13335783 haploid (principal pseudohaplotype of diploid) Chromosome 03 May 2022 WELLCOME SANGER INSTITUTE 1,584,929,904 52.50 primary fish 379 GCA_944039275.1 GCA_944039275.1_fDanRer4.1 Danio rerio zebrafish (WGS:CALUEM01 primary hap 2022) 7955 SAMEA14088276 haploid (principal pseudohaplotype of diploid) Chromosome 24 Jun 2022 WELLCOME SANGER INSTITUTE 1,413,675,870 60.61 primary fish 380 GCA_946808225.1 GCA_946808225.1_fSilAri3.1 Silurus aristotelis Aristotle's catfish (primary hap 2022) 933932 SAMEA12595289 haploid Chromosome 15 Sep 2022 WELLCOME SANGER INSTITUTE 800,118,513 42.36 primary fish 381 GCA_947034865.1 GCA_947034865.1_fBarBar1.1 Barbatula barbatula stone loach (primary hap 2022) 135647 SAMEA11296540 haploid Chromosome 07 Oct 2022 WELLCOME SANGER INSTITUTE 617,663,352 39.89 primary fish 382 GCA_947247035.1 GCA_947247035.1_rVipUrs1.1 Vipera ursinii meadow viper (primary hap 2022) 103942 SAMEA12832258 haploid Chromosome 30 Oct 2022 WELLCOME SANGER INSTITUTE 1,625,023,540 49.83 primary reptiles 383 GCA_947561715.1 GCA_947561715.1_kaAscMent1.1 Ascidia mentula pink sea squirt (2022) 38561 SAMEA8724667 haploid Chromosome 11 Dec 2022 WELLCOME SANGER INSTITUTE 196,975,169 32.01 primary otherChordates 384 GCA_947623445.1 GCA_947623445.1_kaClaLepa1.1 Clavelina lepadiformis light-bulb sea squirt (2022) 159417 SAMEA7536527 haploid Chromosome 19 Dec 2022 WELLCOME SANGER INSTITUTE 210,089,204 33.50 primary otherChordates 385 GCA_947650265.1 GCA_947650265.1_fSymMel2.1 Symphodus melops corkwing wrasse (primary hap 2022) 171736 SAMEA12219485 haploid (principal pseudohaplotype of diploid) Chromosome 21 Dec 2022 WELLCOME SANGER INSTITUTE 636,368,453 28.78 primary fish 386 GCA_948146105.1 GCA_948146105.1_fSynAcu2.1 Syngnathus acus greater pipefish (v2 2023 genbank) 161584 SAMEA13854528 haploid Chromosome 18 Jan 2023 WELLCOME SANGER INSTITUTE 359,216,277 32.03 secondary fish 387 GCA_949152265.1 GCA_949152265.1_fPhoPho1.1 Phoxinus phoxinus Eurasian minnow (primary hap 2023) 58324 SAMEA11296539 haploid (principal pseudohaplotype of diploid) Chromosome 08 Apr 2023 WELLCOME SANGER INSTITUTE 950,498,056 49.52 primary fish 388 GCA_949316315.1 GCA_949316315.1_mMusMuc1.1 Mus musculus house mouse (primary hap 2023) 10090 SAMEA112251260 haploid (principal pseudohaplotype of diploid) Chromosome 08 Apr 2023 WELLCOME SANGER INSTITUTE 2,770,968,735 45.38 primary mammals 389 GCA_949319135.1 GCA_949319135.1_fSquCep2.1 Squalius cephalus European chub (primary hap 2023) 8284 SAMEA11296547 haploid (principal pseudohaplotype of diploid) Chromosome 08 Apr 2023 WELLCOME SANGER INSTITUTE 1,101,930,522 54.10 primary fish 390 GCA_949357685.1 GCA_949357685.1_fGobGob1.1 Gobio gobio gudgeon (primary hap 2023) 27704 SAMEA11296538 haploid (principal pseudohaplotype of diploid) Chromosome 08 Apr 2023 WELLCOME SANGER INSTITUTE 1,460,679,231 68.84 primary fish 391 GCA_949357725.1 GCA_949357725.1_fHypImm3.1 Hyperoplus immaculatus greater sand-eel (primary hap 2023) 1484357 SAMEA13854416 haploid (principal pseudohaplotype of diploid) Chromosome 08 Apr 2023 WELLCOME SANGER INSTITUTE 797,804,280 42.12 primary fish 392 GCA_949606895.1 GCA_949606895.1_fNotRos5.1 Notothenia rossii marbled rockcod (primary hap 2023) 101497 SAMEA12815441 haploid (principal pseudohaplotype of diploid) Chromosome 08 Apr 2023 WELLCOME SANGER INSTITUTE 1,042,906,029 52.08 primary fish 393 GCA_949628215.1 GCA_949628215.1_bGulAri2.1 Phalacrocorax aristotelis European shag (primary hap 2023) 126867 SAMEA10059652 haploid (principal pseudohaplotype of diploid) Chromosome 08 Apr 2023 WELLCOME SANGER INSTITUTE 1,279,134,750 13.53 primary birds 394 GCA_949748355.1 GCA_949748355.1_fMelGel1.1 Melanostigma gelatinosum limp eelpout (primary hap 2023) 1091424 SAMEA12815492 haploid (principal pseudohaplotype of diploid) Chromosome 08 Apr 2023 WELLCOME SANGER INSTITUTE 661,975,483 29.55 primary fish 395 GCA_949752795.1 GCA_949752795.1_mHypAmp2.1 Hyperoodon ampullatus northern bottlenose whale (primary hap 2023) 48744 SAMEA10839125 haploid (principal pseudohaplotype of diploid) Chromosome 08 Apr 2023 WELLCOME SANGER INSTITUTE 2,828,760,712 45.42 primary mammals 396 GCA_949987555.1 GCA_949987555.1_fBorAnt1.1 Borostomias antarcticus large-eye snaggletooth (primary hap 2023) 473354 SAMEA8748812 haploid (principal pseudohaplotype of diploid) Chromosome 03 May 2023 WELLCOME SANGER INSTITUTE 909,249,001 50.81 primary fish 397 GCA_949987585.1 GCA_949987585.1_mPipPyg2.1 Pipistrellus pygmaeus soprano pipistrelle (primary hap 2023) 246814 SAMEA9921456 haploid (principal pseudohaplotype of diploid) Chromosome 01 May 2023 WELLCOME SANGER INSTITUTE 1,895,125,685 36.46 primary mammals 398 GCA_949987615.1 GCA_949987615.1_fPolPol2.1 Pollachius pollachius pollack (primary hap 2023) 185739 SAMEA111562038 haploid (principal pseudohaplotype of diploid) Chromosome 03 May 2023 WELLCOME SANGER INSTITUTE 606,767,444 33.18 primary fish 399 GCA_949987685.1 GCA_949987685.1_fAmmMar1.1 Ammodytes marinus lesser sand-eel (primary hap 2023) 146480 SAMEA110137622 haploid (principal pseudohaplotype of diploid) Chromosome 03 May 2023 WELLCOME SANGER INSTITUTE 777,835,610 40.34 primary fish 400 GCA_951216825.1 GCA_951216825.1_fEleAnt2.1 Electrona antarctica Antarctic lanternfish (primary hap 2023) 206093 SAMEA8748807 haploid (principal pseudohaplotype of diploid) Chromosome 11 May 2023 WELLCOME SANGER INSTITUTE 1,427,445,741 55.68 primary fish 401 GCA_951394365.1 GCA_951394365.1_bTetUro1.1 Tetrao urogallus western capercaillie (primary hap 2023) 100830 SAMEA9654429 haploid (principal pseudohaplotype of diploid) Chromosome 15 Jun 2023 WELLCOME SANGER INSTITUTE 1,013,184,029 12.38 primary birds 402 GCA_951394435.1 GCA_951394435.1_mSteCoe1.1 Stenella coeruleoalba striped dolphin (primary hap 2023) 9737 SAMEA111380539 haploid (principal pseudohaplotype of diploid) Chromosome 16 Jun 2023 WELLCOME SANGER INSTITUTE 2,691,423,227 44.36 primary mammals 403 GCA_951640355.1 GCA_951640355.1_mEptNil1.1 Cnephaeus nilssonii northern bat (primary hap 2023) 3371016 SAMEA14098186 haploid (principal pseudohaplotype of diploid) Chromosome 18 May 2023 WELLCOME SANGER INSTITUTE 2,064,119,045 37.29 primary mammals 404 GCA_951799395.1 GCA_951799395.1_fArgSil1.1 Argentina silus greater argentine (primary hap 2023) 446415 SAMEA110137623 haploid (principal pseudohaplotype of diploid) Chromosome 27 May 2023 WELLCOME SANGER INSTITUTE 670,765,936 40.44 primary fish 405 GCA_951799975.1 GCA_951799975.1_fGobNig1.1 Gobius niger black goby (primary hap 2023) 85417 SAMEA13854149 haploid (principal pseudohaplotype of diploid) Chromosome 27 May 2023 WELLCOME SANGER INSTITUTE 870,572,126 40.54 primary fish 406 GCA_951802725.1 GCA_951802725.1_fRutRut2.1 Rutilus rutilus roach minnow (primary hap 2023) 48668 SAMEA11296543 haploid (principal pseudohaplotype of diploid) Chromosome 30 May 2023 WELLCOME SANGER INSTITUTE 1,100,195,650 53.60 primary fish 407 GCA_951804945.1 GCA_951804945.1_rPodCre2.1 Podarcis cretensis Cretan wall lizard (primary hap 2023) 1330250 SAMEA12110019 haploid (principal pseudohaplotype of diploid) Chromosome 02 Jun 2023 WELLCOME SANGER INSTITUTE 1,507,627,055 44.75 primary reptiles 408 GCA_960531495.1 GCA_960531495.1_fZeuFab8.1 Zeus faber John dory (primary hap 2023) 64108 SAMEA111562156 haploid (principal pseudohaplotype of diploid) Chromosome 26 Jul 2023 WELLCOME SANGER INSTITUTE 804,731,948 44.89 primary fish 409 GCA_963082525.1 GCA_963082525.1_bNesMay2.1 Nesoenas mayeri pink pigeon (primary hap 2023) 187126 SAMEA12922160 haploid (principal pseudohaplotype of diploid) Chromosome 09 Aug 2023 WELLCOME SANGER INSTITUTE 1,183,271,950 14.40 primary birds 410 GCA_963082875.1 GCA_963082875.1_kaCorEumy4.1 Corella eumyota orange-tipped seq squirt (primary hap 2023) 431183 SAMEA7536466 haploid (principal pseudohaplotype of diploid) Chromosome 09 Aug 2023 WELLCOME SANGER INSTITUTE 129,324,498 32.48 primary otherChordates 411 GCA_963210335.1 GCA_963210335.1_bFalPun1.1 Falco punctatus Mauritius kestrel (primary hap 2023) 148596 SAMEA14356472 haploid (principal pseudohaplotype of diploid) Chromosome 19 Aug 2023 WELLCOME SANGER INSTITUTE 1,279,277,844 14.14 primary birds 412 GCA_963264785.1 GCA_963264785.1_bPsiEch3.1 Psittacula echo Mauritius parakeet (primary hap 2023) 232653 SAMEA12361725 haploid (principal pseudohaplotype of diploid) Chromosome 20 Aug 2023 WELLCOME SANGER INSTITUTE 1,203,831,919 16.89 primary birds 413 GCA_963280865.1 GCA_963280865.1_fGymBra2.1 Gymnoscopelus braueri Brauer's lanternfish (primary hap 2023) 948025 SAMEA12815494 haploid (principal pseudohaplotype of diploid) Chromosome 20 Aug 2023 WELLCOME SANGER INSTITUTE 1,367,984,568 56.24 primary fish 414 GCA_963383615.1 GCA_963383615.1_fLipPho2.1 Lipophrys pholis shanny (primary hap 2023) 56720 SAMEA7522844 haploid Chromosome 26 Aug 2023 WELLCOME SANGER INSTITUTE 768,243,328 29.07 primary fish 415 GCA_963383645.1 GCA_963383645.1_mMusAve1.1 Muscardinus avellanarius hazel dormouse (primary hap 2023) 39082 SAMEA110180654 haploid (principal pseudohaplotype of diploid) Chromosome 26 Aug 2023 WELLCOME SANGER INSTITUTE 2,497,520,702 43.99 primary mammals 416 GCA_963422515.1 GCA_963422515.1_fBleOce1.1 Blennius ocellaris butterfly blenny (primary hap 2023) 195075 SAMEA112788961 haploid (principal pseudohaplotype of diploid) Chromosome 13 Sep 2023 WELLCOME SANGER INSTITUTE 728,745,255 32.58 primary fish 417 GCA_963454915.1 GCA_963454915.1_fGymMic1.1 Gymnoscopelus microlampas minispotted lanternfish (primary hap 2023) 1090481 SAMEA12815435 haploid (principal pseudohaplotype of diploid) Chromosome 13 Sep 2023 WELLCOME SANGER INSTITUTE 1,318,656,016 47.09 primary fish 418 GCA_963455305.1 GCA_963455305.1_mPleAur1.1 Plecotus auritus brown big-eared bat (primary hap 2023) 61862 SAMEA110056142 haploid (principal pseudohaplotype of diploid) Chromosome 20 Sep 2023 WELLCOME SANGER INSTITUTE 2,163,221,563 40.04 primary mammals 419 GCA_963455335.1 GCA_963455335.1_mMarMar1.1 Martes martes European pine marten (primary hap 2023) 29065 SAMEA14268932 haploid (principal pseudohaplotype of diploid) Chromosome 20 Sep 2023 WELLCOME SANGER INSTITUTE 2,484,650,161 32.75 primary mammals 420 GCA_963457625.1 GCA_963457625.1_fCycLum2.1 Cyclopterus lumpus lumpfish (primary hap v2.1 2023 genbank) 8103 SAMEA112789128 haploid (principal pseudohaplotype of diploid) Chromosome 20 Sep 2023 WELLCOME SANGER INSTITUTE 586,296,809 30.29 secondary fish 421 GCA_963457635.1 GCA_963457635.1_fMicVar1.1 Microchirus variegatus thickback sole (primary hap 2023) 90074 SAMEA12219470 haploid (principal pseudohaplotype of diploid) Chromosome 20 Sep 2023 WELLCOME SANGER INSTITUTE 724,694,306 39.83 primary fish 422 GCA_963457725.1 GCA_963457725.1_fSprSpr1.1 Sprattus sprattus European sprat (primary hap 2023) 196075 SAMEA111562173 haploid (principal pseudohaplotype of diploid) Chromosome 20 Sep 2023 WELLCOME SANGER INSTITUTE 840,332,306 38.43 primary fish 423 GCA_963513975.1 GCA_963513975.1_bFriCoe1.1 Fringilla coelebs chaffinch (primary hap 2023) 37598 SAMEA9359753 haploid (principal pseudohaplotype of diploid) Chromosome 28 Sep 2023 WELLCOME SANGER INSTITUTE 1,209,243,761 17.01 primary birds 424 GCA_963514005.1 GCA_963514005.1_sRajBra1.1 Raja brachyura blonde ray (primary hap 2023) 223862 SAMEA110450105 haploid (principal pseudohaplotype of diploid) Chromosome 28 Sep 2023 WELLCOME SANGER INSTITUTE 2,700,467,673 66.30 primary sharks 425 GCA_963514085.1 GCA_963514085.1_fCheLab1.1 Chelon labrosus thicklip grey mullet (primary hap 2023) 48171 SAMEA111562027 haploid (principal pseudohaplotype of diploid) Chromosome 29 Sep 2023 WELLCOME SANGER INSTITUTE 717,420,143 28.89 primary fish 426 GCA_963514095.1 GCA_963514095.1_fEutGur1.1 Eutrigla gurnardus grey gurnard (primary hap 2023) 426098 SAMEA111562159 haploid (principal pseudohaplotype of diploid) Chromosome 29 Sep 2023 WELLCOME SANGER INSTITUTE 680,483,561 35.71 primary fish 427 GCA_963675345.1 GCA_963675345.1_kaTriClin1.1 Trididemnum clinides tunicate T.clinides (primary hap 2023) 641091 SAMEA9873882 haploid (principal pseudohaplotype of diploid) Chromosome 07 Dec 2023 WELLCOME SANGER INSTITUTE 906,935,117 36.57 primary otherChordates 428 GCA_963691815.1 GCA_963691815.1_fEchVip8.1 Echiichthys vipera lesser weever (primary hap 2023) 94984 SAMEA112765695 haploid (principal pseudohaplotype of diploid) Chromosome 07 Dec 2023 WELLCOME SANGER INSTITUTE 800,398,249 38.25 primary fish 429 GCA_963693515.1 GCA_963693515.1_mPipNat.pri Pipistrellus nathusii Nathusius's pipistrelle (primary hap 2024) 59473 SAMEA114653171 haploid Chromosome 07 Feb 2024 Leibniz Institute for Zoo and Wildlife Research 1,804,478,338 35.23 secondary mammals 430 GCA_963854745.1 GCA_963854745.1_fScoMax1.1 Scophthalmus maximus turbot (primary hap 2023) 52904 SAMEA110450106 haploid (principal pseudohaplotype of diploid) Chromosome 15 Dec 2023 WELLCOME SANGER INSTITUTE 550,297,089 25.96 primary fish 431 GCA_963921485.1 GCA_963921485.1_norwegian_landrace Sus scrofa pig (Norwegian landrace 2024) 9823 SAMEA115082662 haploid Chromosome 11 Jan 2024 NORWEGIAN UNIVERSITY OF LIFE SCIENCES 2,633,804,377 39.60 secondary mammals 432 GCA_963921795.1 GCA_963921795.1_fNanAch1.1 Nannobrachium achirus lantern fish (primary hap 2024) 473322 SAMEA12815432 haploid (principal pseudohaplotype of diploid) Chromosome 09 Feb 2024 WELLCOME SANGER INSTITUTE 1,658,848,640 54.08 primary fish 433 GCA_963924005.1 GCA_963924005.1_fProBol1.1 Protomyctophum bolini Bolin's lanternfish (primary hap 2024) 443714 SAMEA12815434 haploid (principal pseudohaplotype of diploid) Chromosome 19 Jan 2024 WELLCOME SANGER INSTITUTE 1,148,224,649 47.04 primary fish 434 GCA_963924515.1 GCA_963924515.1_mVesMur1.1 Vespertilio murinus particolored bat (primary hap 2024) 59485 SAMEA112247422 haploid (principal pseudohaplotype of diploid) Chromosome 29 Jan 2024 WELLCOME SANGER INSTITUTE 1,925,577,803 37.48 primary mammals 435 GCA_963924565.1 GCA_963924565.1_kaAscAspe10.1 Ascidiella aspersa tunicate A.aspersa (primary hap 2024) 201961 SAMEA110449820 haploid (principal pseudohaplotype of diploid) Chromosome 29 Jan 2024 WELLCOME SANGER INSTITUTE 308,571,401 35.09 primary otherChordates 436 GCA_963924665.1 GCA_963924665.1_mMicMin1.1 Micromys minutus European harvest mouse (primary hap 2024) 13151 SAMEA112468042 haploid (principal pseudohaplotype of diploid) Chromosome 29 Jan 2024 WELLCOME SANGER INSTITUTE 2,651,787,409 42.52 primary mammals 437 GCA_963932225.1 GCA_963932225.1_bLarFus1.1 Larus fuscus lesser black-backed gull (primary hap 2024) 8915 SAMEA112468039 haploid (principal pseudohaplotype of diploid) Chromosome 07 Feb 2024 WELLCOME SANGER INSTITUTE 1,324,286,540 27.18 primary birds 438 GCA_963969265.1 GCA_963969265.1_fRhaChi2.1 Rhamphochromis sp. chilingali Malawi cichlid R.sp.'chilingali' (2024) 454631 SAMEA112818853 haploid Chromosome 26 Feb 2024 WELLCOME SANGER INSTITUTE 921,184,210 38.20 primary fish 439 GCA_963971535.1 GCA_963971535.1_fNotCoa1.1 Notolepis coatsorum Antarctic jonasfish (primary hap 2024) 948063 SAMEA8748806 haploid (principal pseudohaplotype of diploid) Chromosome 07 Mar 2024 WELLCOME SANGER INSTITUTE 3,427,809,033 68.42 primary fish 440 GCA_963989245.1 GCA_963989245.1_fNanAnt1.1 Nansenia antarctica pencil smelt N.antarctica (primary hap 2024) 443705 SAMEA8748805 haploid (principal pseudohaplotype of diploid) Chromosome 11 Mar 2024 WELLCOME SANGER INSTITUTE 1,085,794,659 48.79 primary fish 441 GCA_963989345.1 GCA_963989345.1_bClaHye2.1 Clangula hyemalis long-tailed duck (primary hap 2024) 197941 SAMEA112468035 haploid (principal pseudohaplotype of diploid) Chromosome 14 Mar 2024 WELLCOME SANGER INSTITUTE 1,206,104,048 26.17 primary birds 442 GCA_963993115.1 GCA_963993115.1_fAbrBra2.1 Abramis brama common bream (primary hap 2024) 38527 SAMEA11296536 haploid (principal pseudohaplotype of diploid) Chromosome 16 Mar 2024 WELLCOME SANGER INSTITUTE 1,108,218,292 48.57 primary fish 443 GCA_964030765.1 GCA_964030765.1_fMicPou1.1 Micromesistius poutassou blue whiting (primary hap 2024) 81636 SAMEA111457552 haploid (principal pseudohaplotype of diploid) Chromosome 20 Apr 2024 WELLCOME SANGER INSTITUTE 520,636,573 33.91 primary fish 444 GCA_964034855.1 GCA_964034855.1_bAnsBra1.1 Anser brachyrhynchus pink-footed goose (primary hap 2024) 132585 SAMEA112468040 haploid (principal pseudohaplotype of diploid) Chromosome 27 Apr 2024 WELLCOME SANGER INSTITUTE 1,287,337,719 20.21 primary birds 445 GCA_964035555.1 GCA_964035555.1_bNetRuf1.1 Netta rufina red-crested pochard (primary hap 2024) 30387 SAMEA112468124 haploid (principal pseudohaplotype of diploid) Chromosome 29 Apr 2024 WELLCOME SANGER INSTITUTE 1,166,978,622 14.68 primary birds 446 GCA_964059295.1 GCA_964059295.1_bNumArq3.hap2.1 Numenius arquata Eurasian curlew (hap2 2024) 31919 SAMEA112693994 haploid Scaffold 29 May 2024 WELLCOME SANGER INSTITUTE 1,198,356,613 24.54 secondary birds 447 GCA_964059595.1 GCA_964059595.1_bBucCla1.1 Bucephala clangula common goldeneye (primary hap 2024) 107022 SAMEA112468123 haploid (principal pseudohaplotype of diploid) Chromosome 06 Jun 2024 WELLCOME SANGER INSTITUTE 1,190,938,797 15.68 primary birds 448 GCA_964094495.2 GCA_964094495.2_mMyoMys1.hap1.1 Myotis mystacinus whiskered bat (hap1 2024) 109479 SAMEA114250307 haploid Chromosome 12 Jun 2024 WELLCOME SANGER INSTITUTE 2,081,199,042 37.63 primary mammals 449 GCA_964106205.1 GCA_964106205.1_mNeoVis2.hap2.1 Neogale vison American mink (hap2 2024) 452646 SAMEA112468126 haploid Chromosome 06 Jun 2024 WELLCOME SANGER INSTITUTE 2,662,777,898 37.60 secondary mammals 450 GCA_964106545.1 GCA_964106545.1_mNeoVis2.hap1.1 Neogale vison American mink (hap1 2024) 452646 SAMEA112468126 haploid Chromosome 06 Jun 2024 WELLCOME SANGER INSTITUTE 2,697,147,479 39.10 primary mammals 451 GCA_964106635.2 GCA_964106635.2_rPodPit1.hap2.2 Podarcis pityusensis lizards P.pityusensis (rPodPit1.hap2.2 2024) 74359 SAMEA114217797 haploid Chromosome 05 Jul 2024 WELLCOME SANGER INSTITUTE 1,417,079,496 37.15 secondary reptiles 452 GCA_964106645.2 GCA_964106645.2_rPodPit1.hap1.2 Podarcis pityusensis lizards P.pityusensis (rPodPit1.hap1.2 2024) 74359 SAMEA114217797 haploid Chromosome 06 Jul 2024 WELLCOME SANGER INSTITUTE 1,515,373,509 44.72 primary reptiles 453 GCA_964106785.1 GCA_964106785.1_rPodGai1.hap2.1 Podarcis gaigeae Skyros wall lizard (rPodGai1.hap2.1 2024) 90521 SAMEA114217796 haploid Chromosome 06 Jun 2024 WELLCOME SANGER INSTITUTE 1,422,314,362 37.52 secondary reptiles 454 GCA_964106825.2 GCA_964106825.2_mVulVul1.hap1.2 Vulpes vulpes red fox (hap1 2024) 9627 SAMEA113398840 haploid Chromosome 27 Jun 2024 WELLCOME SANGER INSTITUTE 2,411,727,275 33.01 primary mammals 455 GCA_964106855.1 GCA_964106855.1_bGruGru1.hap1.1 Grus grus Eurasian crane (hap1 2024) 40816 SAMEA113398837 haploid Chromosome 06 Jun 2024 WELLCOME SANGER INSTITUTE 1,352,282,554 18.19 primary birds 456 GCA_964106895.1 GCA_964106895.1_bNumArq3.hap1.1 Numenius arquata Eurasian curlew (hap1 2024) 31919 SAMEA112693994 haploid Chromosome 06 Jun 2024 WELLCOME SANGER INSTITUTE 1,348,876,333 15.90 primary birds 457 GCA_964106915.2 GCA_964106915.2_rPodGai1.hap1.2 Podarcis gaigeae Skyros wall lizard (v2 hap1 2024) 90521 SAMEA114217796 haploid Chromosome 17 Sep 2024 WELLCOME SANGER INSTITUTE 1,514,643,635 44.27 primary reptiles 458 GCA_964106925.2 GCA_964106925.2_mVulVul1.hap2.2 Vulpes vulpes red fox (hap2 2024) 9627 SAMEA113398840 haploid Chromosome 27 Jun 2024 WELLCOME SANGER INSTITUTE 2,398,532,178 33.10 secondary mammals 459 GCA_964145185.2 GCA_964145185.2_mMinSch1.hap2.2 Miniopterus schreibersii Schreibers' long-fingered bat (v2 hap2 2025) 9433 SAMEA113980738 haploid Scaffold 05 Apr 2025 WELLCOME SANGER INSTITUTE 1,699,631,453 33.74 secondary mammals 460 GCA_964146895.2 GCA_964146895.2_mMinSch1.hap1.2 Miniopterus schreibersii Schreibers' long-fingered bat (v2 hap1 2025) 9433 SAMEA113980738 haploid Chromosome 05 Apr 2025 WELLCOME SANGER INSTITUTE 1,850,590,334 34.45 primary mammals 461 GCA_964148845.1 GCA_964148845.1_mMesBid2.hap2.1 Mesoplodon bidens Sowerby's beaked whale (hap2 2024) 48745 SAMEA112165298 haploid Chromosome 06 Jun 2024 WELLCOME SANGER INSTITUTE 2,732,770,104 43.69 secondary mammals 462 GCA_964165515.1 GCA_964165515.1_mMesBid2.hap1.1 Mesoplodon bidens Sowerby's beaked whale (hap1 2024) 48745 SAMEA112165298 haploid Chromosome 06 Jun 2024 WELLCOME SANGER INSTITUTE 2,999,098,505 47.27 primary mammals 463 GCA_964187855.1 GCA_964187855.1_kmMyxGlut1.1 Myxine glutinosa Atlantic hagfish (primary hap 2024) 7769 SAMEA12790223 haploid (principal pseudohaplotype of diploid) Chromosome 18 Jun 2024 WELLCOME SANGER INSTITUTE 3,057,523,704 78.59 primary otherChordates 464 GCA_964187965.1 GCA_964187965.1_klBraLanc2.hap1.1 Branchiostoma lanceolatum amphioxus (hap1.1 2024) 7740 SAMEA111562176 haploid Chromosome 21 Jun 2024 WELLCOME SANGER INSTITUTE 468,418,021 27.66 secondary invertebrate 465 GCA_964188175.1 GCA_964188175.1_rPodSic1.hap1.1 Podarcis siculus Italian wall lizard (rPodSic1.hap1.1 2024) 65484 SAMEA115336774 haploid Chromosome 21 Jun 2024 WELLCOME SANGER INSTITUTE 1,571,381,643 46.57 primary reptiles 466 GCA_964188305.1 GCA_964188305.1_rPodBoc1.hap1.1 Podarcis bocagei lizards P.bocagei (rPodBoc1.hap1.1 2024) 90520 SAMEA115336769 haploid Chromosome 21 Jun 2024 WELLCOME SANGER INSTITUTE 1,615,206,822 48.75 primary reptiles 467 GCA_964188315.1 GCA_964188315.1_rPodMur119.hap1.1 Podarcis muralis common wall lizard (hap1 2024) 64176 SAMEA115336776 haploid Chromosome 21 Jun 2024 WELLCOME SANGER INSTITUTE 1,522,641,370 44.97 primary reptiles 468 GCA_964188325.1 GCA_964188325.1_rPodBoc1.hap2.1 Podarcis bocagei lizards P.bocagei (rPodBoc1.hap2.1 2024) 90520 SAMEA115336769 haploid Chromosome 21 Jun 2024 WELLCOME SANGER INSTITUTE 1,473,581,329 39.42 secondary reptiles 469 GCA_964188335.1 GCA_964188335.1_bAnaPla2.hap2.1 Anas platyrhynchos mallard (hap2 2024) 8839 SAMEA113398833 haploid Scaffold 19 Jun 2024 WELLCOME SANGER INSTITUTE 1,136,573,142 26.25 secondary birds 470 GCA_964188345.1 GCA_964188345.1_bAnaPla2.hap1.1 Anas platyrhynchos mallard (hap1 2024) 8839 SAMEA113398833 haploid Chromosome 21 Jun 2024 WELLCOME SANGER INSTITUTE 1,300,248,985 21.79 primary birds 471 GCA_964188355.1 GCA_964188355.1_bButBut1.hap1.1 Buteo buteo common buzzard (bButBut1.hap1.1 2024) 30397 SAMEA114594453 haploid Chromosome 21 Jun 2024 WELLCOME SANGER INSTITUTE 1,303,700,921 14.18 primary birds 472 GCA_964188365.1 GCA_964188365.1_rPodMur119.hap2.1 Podarcis muralis common wall lizard (hap2 2024) 64176 SAMEA115336776 haploid Scaffold 19 Jun 2024 WELLCOME SANGER INSTITUTE 1,433,931,530 37.85 secondary reptiles 473 GCA_964188375.1 GCA_964188375.1_bButBut1.hap2.1 Buteo buteo common buzzard (bButBut1.hap2.1 2024) 30397 SAMEA114594453 haploid Scaffold 19 Jun 2024 WELLCOME SANGER INSTITUTE 1,330,554,072 25.08 secondary birds 474 GCA_964188395.1 GCA_964188395.1_rPodSic1.hap2.1 Podarcis siculus Italian wall lizard (rPodSic1.hap2.1 2024) 65484 SAMEA115336774 haploid Scaffold 19 Jun 2024 WELLCOME SANGER INSTITUTE 1,455,930,776 38.73 secondary reptiles 475 GCA_964188405.1 GCA_964188405.1_fProPar1.1 Protomyctophum parallelum parallel lanternfish (primary hap 2024) 1091426 SAMEA12815440 haploid (principal pseudohaplotype of diploid) Chromosome 21 Jun 2024 WELLCOME SANGER INSTITUTE 1,235,328,005 53.94 primary fish 476 GCA_964188415.1 GCA_964188415.1_fProPar1.1_alternate_haplotype Protomyctophum parallelum parallel lanternfish (alternate hap 2024) 1091426 SAMEA12815440 alternate-pseudohaplotype Chromosome 21 Jun 2024 WELLCOME SANGER INSTITUTE 1,013,731,500 46.52 secondary fish 477 GCA_964194105.1 GCA_964194105.1_mSpeCit3.1 Spermophilus citellus European suslik (primary hap 2024) 9997 SAMEA10332752 haploid (principal pseudohaplotype of diploid) Chromosome 28 Jun 2024 WELLCOME SANGER INSTITUTE 3,090,049,053 41.35 primary mammals 478 GCA_964194135.1 GCA_964194135.1_mTalEur1.hap1.1 Talpa europaea European mole (hap1 2024) 9375 SAMEA112468127 haploid Chromosome 28 Jun 2024 WELLCOME SANGER INSTITUTE 2,061,000,977 32.53 primary mammals 479 GCA_964194155.1 GCA_964194155.1_sCetMax3.hap1.1 Cetorhinus maximus basking shark (sCetMax3.hap1.1 2024) 57982 SAMEA113902670 haploid Chromosome 28 Jun 2024 WELLCOME SANGER INSTITUTE 3,993,866,540 65.99 primary sharks 480 GCA_964194165.1 GCA_964194165.1_sCetMax3.hap2.1 Cetorhinus maximus basking shark (sCetMax3.hap2.1 2024) 57982 SAMEA113902670 haploid Scaffold 27 Jun 2024 WELLCOME SANGER INSTITUTE 3,817,333,378 67.08 secondary sharks 481 GCA_964194185.1 GCA_964194185.1_mRhiHip2.hap1.1 Rhinolophus hipposideros lesser horseshoe bat (hap1 2024) 77218 SAMEA113980802 haploid Chromosome 28 Jun 2024 WELLCOME SANGER INSTITUTE 2,171,328,640 33.62 primary mammals 482 GCA_964194205.1 GCA_964194205.1_mTalEur1.hap2.1 Talpa europaea European mole (hap2 2024) 9375 SAMEA112468127 haploid Scaffold 27 Jun 2024 WELLCOME SANGER INSTITUTE 2,056,471,431 33.58 secondary mammals 483 GCA_964194215.1 GCA_964194215.1_mRhiHip2.hap2.1 Rhinolophus hipposideros lesser horseshoe bat (hap2 2024) 77218 SAMEA113980802 haploid Scaffold 27 Jun 2024 WELLCOME SANGER INSTITUTE 2,240,459,116 34.27 secondary mammals 484 GCA_964194405.1 GCA_964194405.1_rVipBer3.hap2.1 Vipera berus adder (hap2 2024) 31155 SAMEA114293681 haploid Scaffold 27 Jun 2024 WELLCOME SANGER INSTITUTE 1,476,666,783 48.46 secondary reptiles 485 GCA_964194415.1 GCA_964194415.1_rVipBer3.hap1.1 Vipera berus adder (hap1 2024) 31155 SAMEA114293681 haploid Chromosome 28 Jun 2024 WELLCOME SANGER INSTITUTE 1,695,017,208 50.49 primary reptiles 486 GCA_964195595.2 GCA_964195595.2_bCalBor7.hap1.2 Calonectris borealis Cory's shearwater (hap1.2 2024) 1323832 SAMEA114294356 haploid Chromosome 24 Jul 2024 WELLCOME SANGER INSTITUTE 1,366,205,003 24.91 primary birds 487 GCA_964195625.1 GCA_964195625.1_mMyoMys1.hap2.1 Myotis mystacinus whiskered bat (hap2 2024) 109479 SAMEA114250307 haploid Chromosome 30 Jun 2024 WELLCOME SANGER INSTITUTE 1,943,289,057 36.81 secondary mammals 488 GCA_964196065.2 GCA_964196065.2_bCalBor7.hap2.2 Calonectris borealis Cory's shearwater (hap2.2 2024) 1323832 SAMEA114294356 haploid Chromosome 23 Jul 2024 WELLCOME SANGER INSTITUTE 1,211,470,109 23.68 secondary birds 489 GCA_964197995.1 GCA_964197995.1_fScaEry2.hap1.1 Scardinius erythrophthalmus rudd (fScaEry2.hap1.1 2024) 58319 SAMEA11296541 haploid Chromosome 10 Jul 2024 WELLCOME SANGER INSTITUTE 1,229,666,150 56.16 primary fish 490 GCA_964198595.1 GCA_964198595.1_kcLamFluv1.1 Lampetra fluviatilis European river lamprey (primary hap 2024) 7748 SAMEA111528664 haploid (principal pseudohaplotype of diploid) Chromosome 13 Jul 2024 WELLCOME SANGER INSTITUTE 1,042,475,189 56.51 primary otherChordates 491 GCA_964199755.1 GCA_964199755.1_bLarMic1.1 Larus michahellis yellow-legged gull (primary hap 2024) 119627 SAMEA114211328 haploid (principal pseudohaplotype of diploid) Chromosome 14 Jul 2024 WELLCOME SANGER INSTITUTE 1,405,581,498 29.78 primary birds 492 GCA_964204655.1 GCA_964204655.1_aTriCri1.1 Triturus cristatus warty newt (primary hap 2024) 8323 SAMEA112468129 haploid (principal pseudohaplotype of diploid) Chromosome 31 Jul 2024 WELLCOME SANGER INSTITUTE 22,324,633,092 50.89 primary amphibians 493 GCA_964204865.1 GCA_964204865.1_kaStyClav1.hap1.1 Styela clava tunicate S.clava (kaStyClav1.hap1.1 2024) 7725 SAMEA7536473 haploid Chromosome 27 Jul 2024 WELLCOME SANGER INSTITUTE 377,969,001 38.35 primary otherChordates 494 GCA_964204955.1 GCA_964204955.1_kaStyClav1.hap2.1 Styela clava tunicate S.clava (kaStyClav1.hap2.1 2024) 7725 SAMEA7536473 haploid Scaffold 27 Jul 2024 WELLCOME SANGER INSTITUTE 381,580,332 39.21 secondary otherChordates 495 GCA_964205295.1 GCA_964205295.1_aBomVar4.paternal.1 Bombina variegata yellow-bellied toad (paternal hap 2024) 8348 SAMEA112651403 haploid Chromosome 29 Jul 2024 WELLCOME SANGER INSTITUTE 9,369,791,316 70.82 primary amphibians 496 GCA_964205305.1 GCA_964205305.1_aBomVar4.maternal.1 Bombina variegata yellow-bellied toad (maternal hap 2024) 8348 SAMEA112651403 haploid Chromosome 29 Jul 2024 WELLCOME SANGER INSTITUTE 9,112,230,460 70.74 secondary amphibians 497 GCA_964211785.1 GCA_964211785.1_bAnsAns1.hap2.1 Anser anser Domestic goose (bAnsAns1.hap2.1 2024) 8843 SAMEA113398854 haploid Chromosome 31 Jul 2024 WELLCOME SANGER INSTITUTE 1,168,290,161 26.78 secondary birds 498 GCA_964211795.1 GCA_964211795.1_bAytFer1.hap2.1 Aythya ferina common pochard (bAytFer1.hap2.1 2024) 219593 SAMEA112468034 haploid Scaffold 30 Jul 2024 WELLCOME SANGER INSTITUTE 1,103,588,439 25.38 secondary birds 499 GCA_964211825.1 GCA_964211825.1_bAytFer1.hap1.1 Aythya ferina common pochard (bAytFer1.hap1.1 2024) 219593 SAMEA112468034 haploid Chromosome 31 Jul 2024 WELLCOME SANGER INSTITUTE 1,252,319,576 19.38 primary birds 500 GCA_964211835.1 GCA_964211835.1_bAnsAns1.hap1.1 Anser anser Domestic goose (bAnsAns1.hap1.1 2024) 8843 SAMEA113398854 haploid Chromosome 31 Jul 2024 WELLCOME SANGER INSTITUTE 1,313,455,045 20.75 primary birds 501 GCA_964212025.2 GCA_964212025.2_mMyoNat1.hap2.2 Myotis nattereri Natterer's bat (hap2.2 2025) 109481 SAMEA114614248 haploid Scaffold 28 Mar 2025 WELLCOME SANGER INSTITUTE 1,932,610,702 38.23 secondary mammals 502 GCA_964212035.2 GCA_964212035.2_mMyoNat1.hap1.2 Myotis nattereri Natterer's bat (hap1.2 2025) 109481 SAMEA114614248 haploid Chromosome 28 Mar 2025 WELLCOME SANGER INSTITUTE 2,138,592,721 39.05 primary mammals 503 GCA_964213995.1 GCA_964213995.1_sMusAst1.hap1.1 Mustelus asterias starry smooth-hound (sMusAst1.hap1.1 2024) 112232 SAMEA114298637 haploid Chromosome 22 Aug 2024 WELLCOME SANGER INSTITUTE 3,679,792,345 65.58 primary sharks 504 GCA_964214025.1 GCA_964214025.1_sMusAst1.hap2.1 Mustelus asterias starry smooth-hound (sMusAst1.hap2.1 2024) 112232 SAMEA114298637 haploid Scaffold 10 Aug 2024 WELLCOME SANGER INSTITUTE 3,476,679,425 53.51 secondary sharks 505 GCA_964234715.1 GCA_964234715.1_rPodMel1.hap1.1 Podarcis melisellensis lizards P.melisellensis (rPodMel1.hap1.1 2024) 65482 SAMEA115336775 haploid Chromosome 31 Aug 2024 WELLCOME SANGER INSTITUTE 1,574,923,724 46.82 primary reptiles 506 GCA_964234825.1 GCA_964234825.1_rPodMel1.hap2.1 Podarcis melisellensis lizards P.melisellensis (rPodMel1.hap2.1 2024) 65482 SAMEA115336775 haploid Chromosome 31 Aug 2024 WELLCOME SANGER INSTITUTE 1,437,044,901 37.90 secondary reptiles 507 GCA_964237395.1 GCA_964237395.1_bGalChl1.hap2.1 Gallinula chloropus common moorhen (bGalChl1.hap2.1 2024) 9123 SAMEA113398958 haploid Scaffold 29 Aug 2024 WELLCOME SANGER INSTITUTE 1,208,559,276 22.35 secondary birds 508 GCA_964237585.1 GCA_964237585.1_bGalChl1.hap1.1 Gallinula chloropus common moorhen (bGalChl1.hap1.1 2024) 9123 SAMEA113398958 haploid Chromosome 31 Aug 2024 WELLCOME SANGER INSTITUTE 1,282,411,533 19.18 primary birds 509 GCA_964251985.1 GCA_964251985.1_rPodErh1.hap2.1 Podarcis erhardii lizards P.erhardii (rPodErh1.hap2.1 2024) 140042 SAMEA115336771 haploid Scaffold 29 Aug 2024 WELLCOME SANGER INSTITUTE 1,477,748,000 37.96 secondary reptiles 510 GCA_964252035.1 GCA_964252035.1_rPodErh1.hap1.1 Podarcis erhardii lizards P.erhardii (rPodErh1.hap1.1 2024) 140042 SAMEA115336771 haploid Chromosome 31 Aug 2024 WELLCOME SANGER INSTITUTE 1,495,994,634 44.82 primary reptiles 511 GCA_964261635.1 GCA_964261635.1_aLisHel1.1 Lissotriton helveticus palmate newt (primary hap 2024) 256425 SAMEA110240860 haploid (principal pseudohaplotype of diploid) Chromosome 17 Oct 2024 WELLCOME SANGER INSTITUTE 23,170,028,842 63.58 primary amphibians 512 GCA_964263255.1 GCA_964263255.1_aLisVul1.1 Lissotriton vulgaris common newt (primary hap 2024) 8324 SAMEA110240861 haploid (principal pseudohaplotype of diploid) Chromosome 17 Oct 2024 WELLCOME SANGER INSTITUTE 24,226,223,864 63.80 primary amphibians 513 GCA_964263835.1 GCA_964263835.1_fCorLav1.hap2.1 Coregonus lavaretus common whitefish (fCorLav1.hap2.1 2024) 59291 SAMEA111528661 haploid Scaffold 15 Sep 2024 WELLCOME SANGER INSTITUTE 2,352,365,286 61.14 secondary fish 514 GCA_964263955.1 GCA_964263955.1_fCorLav1.hap1.1 Coregonus lavaretus common whitefish (fCorLav1.hap1.1 2024) 59291 SAMEA111528661 haploid Chromosome 15 Sep 2024 WELLCOME SANGER INSTITUTE 2,842,862,595 62.01 primary fish 515 GCA_964264875.2 GCA_964264875.2_mNycLei1.hap1.2 Nyctalus leisleri lesser noctule (v2 hap1 2025) 59465 SAMEA114250308 haploid Chromosome 03 Apr 2025 WELLCOME SANGER INSTITUTE 2,226,338,041 42.54 primary mammals 516 GCA_964264895.2 GCA_964264895.2_mNycLei1.hap2.2 Nyctalus leisleri lesser noctule (v2 hap2 2025) 59465 SAMEA114250308 haploid Scaffold 02 Apr 2025 WELLCOME SANGER INSTITUTE 2,021,249,169 40.67 secondary mammals 517 GCA_964266715.1 GCA_964266715.1_fMicKit1.1 Microstomus kitt lemon sole (primary hap 2024) 106175 SAMEA114298639 haploid (principal pseudohaplotype of diploid) Chromosome 26 Sep 2024 WELLCOME SANGER INSTITUTE 752,333,918 39.40 primary fish 518 GCA_964270875.1 GCA_964270875.1_rPodFil1.hap2.1 Podarcis filfolensis Filfola wall lizard (rPodFil1.hap2.1 2024) 65481 SAMEA113403362 haploid Scaffold 30 Sep 2024 WELLCOME SANGER INSTITUTE 1,404,018,672 36.85 secondary reptiles 519 GCA_964270895.1 GCA_964270895.1_rPodFil1.hap1.1 Podarcis filfolensis Filfola wall lizard (rPodFil1.hap1.1 2024) 65481 SAMEA113403362 haploid Chromosome 29 Sep 2024 WELLCOME SANGER INSTITUTE 1,506,966,124 44.61 primary reptiles 520 GCA_964270905.1 GCA_964270905.1_mLagAcu1.hap1.1 Leucopleurus acutus Atlantic white-sided dolphin (mLagAcu1.hap1.1 2024) 3371109 SAMEA114493133 haploid Chromosome 29 Sep 2024 WELLCOME SANGER INSTITUTE 2,676,209,414 42.45 primary mammals 521 GCA_964270935.1 GCA_964270935.1_mLagAcu1.hap2.1 Leucopleurus acutus Atlantic white-sided dolphin (mLagAcu1.hap2.1 2024) 3371109 SAMEA114493133 haploid Scaffold 30 Sep 2024 WELLCOME SANGER INSTITUTE 2,422,718,875 39.19 secondary mammals 522 GCA_964271855.1 GCA_964271855.1_mAcoMin1 Acomys minous Crete spiny mouse (2024) 83528 SAMEA112751364 haploid Chromosome 03 Oct 2024 Genoscope CEA 2,350,237,540 34.04 primary mammals 523 GCA_964273445.1 GCA_964273445.1_bStrDea1.hap1.1 Streptopelia decaocto Eurasian collared-dove (bStrDea1.hap1.1 2024) 177147 SAMEA113398962 haploid Chromosome 04 Oct 2024 WELLCOME SANGER INSTITUTE 1,290,957,608 21.55 primary birds 524 GCA_964273585.1 GCA_964273585.1_bStrDea1.hap2.1 Streptopelia decaocto Eurasian collared-dove (bStrDea1.hap2.1 2024) 177147 SAMEA113398962 haploid Chromosome 04 Oct 2024 WELLCOME SANGER INSTITUTE 1,200,501,445 25.49 secondary birds 525 GCA_964273705.1 GCA_964273705.1_rNatHel1.hap1.1 Natrix helvetica snake N.helvetica (rNatHel1.hap1.1 2024) 2025560 SAMEA114598156 haploid Chromosome 05 Oct 2024 WELLCOME SANGER INSTITUTE 1,777,516,490 52.38 primary reptiles 526 GCA_964273795.1 GCA_964273795.1_rNatHel1.hap2.1 Natrix helvetica snake N.helvetica (rNatHel1.hap2.1 2024) 2025560 SAMEA114598156 haploid Scaffold 04 Oct 2024 WELLCOME SANGER INSTITUTE 1,513,526,581 43.90 secondary reptiles 527 GCA_964276385.1 GCA_964276385.1_fGasAcu3.hap2.1 Gasterosteus aculeatus three-spined stickleback (hap2 2024) 69293 SAMEA11296546 haploid Scaffold 25 Oct 2024 WELLCOME SANGER INSTITUTE 457,351,142 27.07 secondary fish 528 GCA_964276395.1 GCA_964276395.1_fGasAcu3.hap1.1 Gasterosteus aculeatus three-spined stickleback (hap1 2024) 69293 SAMEA11296546 haploid Chromosome 28 Oct 2024 WELLCOME SANGER INSTITUTE 511,155,287 27.34 primary fish 529 GCA_964289735.1 GCA_964289735.1_bPhaAeh10.maternal.1 Phaethon aethereus red-billed tropicbird (maternal hap 2024) 37045 SAMEA8228673 haploid Chromosome 28 Oct 2024 WELLCOME SANGER INSTITUTE 1,321,027,743 25.01 primary birds 530 GCA_964289755.1 GCA_964289755.1_bPhaAeh10.paternal.1 Phaethon aethereus red-billed tropicbird (paternal hap 2024) 37045 SAMEA8228673 haploid Scaffold 25 Oct 2024 WELLCOME SANGER INSTITUTE 1,165,860,358 24.47 secondary birds 531 GCA_964339955.1 GCA_964339955.1_mPipHan1.1 Pipistrellus hanaki Hanaki's dwarf bat (2024) 412090 SAMEA115799862 haploid Chromosome 14 Nov 2024 Genoscope CEA 1,892,221,984 38.42 primary mammals 532 GCA_964341445.1 GCA_964341445.1_mMesMir1.hap1.1 Mesoplodon mirus True's beaked whale (hap1.1 2024) 52113 SAMEA115358965 haploid Chromosome 28 Nov 2024 WELLCOME SANGER INSTITUTE 3,442,419,404 51.52 primary mammals 533 GCA_964341485.1 GCA_964341485.1_mMesMir1.hap2.1 Mesoplodon mirus True's beaked whale (hap2.1 2024) 52113 SAMEA115358965 haploid Scaffold 28 Nov 2024 WELLCOME SANGER INSTITUTE 2,956,530,355 45.26 secondary mammals 534 GCA_964374135.1 GCA_964374135.1_mGraGri1.hap1.1 Grampus griseus Risso's dolphin (hap1.1 2024) 83653 SAMEA111380541 haploid Chromosome 29 Nov 2024 WELLCOME SANGER INSTITUTE 2,667,081,928 43.58 primary mammals 535 GCA_964374185.1 GCA_964374185.1_mGraGri1.hap2.1 Grampus griseus Risso's dolphin (hap2.1 2024) 83653 SAMEA111380541 haploid Scaffold 29 Nov 2024 WELLCOME SANGER INSTITUTE 2,403,961,738 43.57 secondary mammals 536 GCA_964374335.1 GCA_964374335.1_fAstCal68.1 Astatotilapia calliptera eastern happy (primary hap 2024) 8154 SAMEA112818850 haploid (principal pseudohaplotype of diploid) Chromosome 01 Dec 2024 WELLCOME SANGER INSTITUTE 933,429,770 32.72 primary fish 537 GCA_964417125.1 GCA_964417125.1_bLarArg3.hap2.1 Larus argentatus herring gull (hap2 2024) 35669 SAMEA115168456 haploid Chromosome 05 Dec 2024 WELLCOME SANGER INSTITUTE 1,256,866,793 27.78 secondary birds 538 GCA_964417175.1 GCA_964417175.1_bLarArg3.hap1.1 Larus argentatus herring gull (hap1 2024) 35669 SAMEA115168456 haploid Chromosome 05 Dec 2024 WELLCOME SANGER INSTITUTE 1,417,856,064 29.51 primary birds 539 GCA_964638095.1 GCA_964638095.1_fPorCra3.hap1.1 Poromitra crassiceps crested bigscale (hap1.1 2025) 88708 SAMEA8748810 haploid Chromosome 02 Jan 2025 WELLCOME SANGER INSTITUTE 1,630,001,977 57.57 primary fish 540 GCA_964638665.1 GCA_964638665.1_fPorCra3.hap2.1 Poromitra crassiceps crested bigscale (hap2.1 2025) 88708 SAMEA8748810 haploid Chromosome 02 Jan 2025 WELLCOME SANGER INSTITUTE 1,511,638,839 56.40 secondary fish 541 GCA_964656075.1 GCA_964656075.1_mPipNat1.hap2.1 Pipistrellus nathusii Nathusius's pipistrelle (hap2.1 2025) 59473 SAMEA115534661 haploid Scaffold 03 Jan 2025 WELLCOME SANGER INSTITUTE 1,961,094,329 39.62 secondary mammals 542 GCA_964656225.1 GCA_964656225.1_mPipNat1.hap1.1 Pipistrellus nathusii Nathusius's pipistrelle (hap1.1 2025) 59473 SAMEA115534661 haploid Chromosome 02 Jan 2025 WELLCOME SANGER INSTITUTE 1,916,223,105 37.99 primary mammals 543 GCA_964656455.1 GCA_964656455.1_mHalGry1.hap1.1 Halichoerus grypus gray seal (hap1.1 2025) 9711 SAMEA115427674 haploid Chromosome 02 Jan 2025 WELLCOME SANGER INSTITUTE 2,400,078,677 34.86 primary mammals 544 GCA_964656465.1 GCA_964656465.1_mHalGry1.hap2.1 Halichoerus grypus gray seal (hap2.1 2025) 9711 SAMEA115427674 haploid Scaffold 03 Jan 2025 WELLCOME SANGER INSTITUTE 2,387,143,391 35.00 secondary mammals 545 GCA_964662095.1 GCA_964662095.1_mMusNiv2.hap2.1 Mustela nivalis least weasel (hap2.1 2025) 36239 SAMEA113398841 haploid Scaffold 03 Jan 2025 WELLCOME SANGER INSTITUTE 2,835,054,152 42.56 secondary mammals 546 GCA_964662115.1 GCA_964662115.1_mMusNiv2.hap1.1 Mustela nivalis least weasel (hap1.1 2025) 36239 SAMEA113398841 haploid Chromosome 03 Jan 2025 WELLCOME SANGER INSTITUTE 3,437,873,602 49.65 primary mammals 547 GCA_965112155.1 GCA_965112155.1_rPodLio1.hap1.1 Podarcis liolepis Columbretes wall lizard (hap1.1 2025) 662736 SAMEA114217798 haploid Chromosome 23 Jan 2025 WELLCOME SANGER INSTITUTE 1,574,020,868 40.01 primary reptiles 548 GCA_965113295.1 GCA_965113295.1_fLeuLeu2.hap1.1 Leuciscus leuciscus common dace (hap1.1 2025) 58325 SAMEA11296544 haploid Chromosome 24 Jan 2025 WELLCOME SANGER INSTITUTE 1,198,377,133 56.31 primary fish 549 GCA_965113305.1 GCA_965113305.1_rPodVau1.hap2.1 Podarcis vaucheri lizards P.vaucheri (hap2.1 2025) 140051 SAMEA115336770 haploid Chromosome 24 Jan 2025 WELLCOME SANGER INSTITUTE 1,510,738,089 40.40 secondary reptiles 550 GCA_965113315.1 GCA_965113315.1_rPodVau1.hap1.1 Podarcis vaucheri lizards P.vaucheri (hap1.1 2025) 140051 SAMEA115336770 haploid Chromosome 24 Jan 2025 WELLCOME SANGER INSTITUTE 1,614,928,384 41.38 primary reptiles 551 GCA_965113325.1 GCA_965113325.1_fLeuLeu2.hap2.1 Leuciscus leuciscus common dace (hap2.1 2025) 58325 SAMEA11296544 haploid Chromosome 24 Jan 2025 WELLCOME SANGER INSTITUTE 1,179,019,172 55.35 secondary fish 552 GCA_965115925.1 GCA_965115925.1_mMyoEma1.hap1.1 Myotis emarginatus Geoffroy's bat (hap1.1 2025) 109480 SAMEA115534660 haploid Chromosome 24 Jan 2025 WELLCOME SANGER INSTITUTE 2,109,797,427 39.36 primary mammals 553 GCA_965115945.1 GCA_965115945.1_mMyoEma1.hap2.1 Myotis emarginatus Geoffroy's bat (hap2.1 2025) 109480 SAMEA115534660 haploid Scaffold 24 Jan 2025 WELLCOME SANGER INSTITUTE 2,081,394,546 39.23 secondary mammals 554 GCA_965119305.1 GCA_965119305.1_aPelLes1.hap1.1 Pelophylax lessonae pool frog (hap1 2025) 45623 SAMEA112468029 haploid Chromosome 11 Feb 2025 WELLCOME SANGER INSTITUTE 5,811,246,175 60.24 primary amphibians 555 GCA_965119315.1 GCA_965119315.1_aPelLes1.hap2.1 Pelophylax lessonae pool frog (hap2 2025) 45623 SAMEA112468029 haploid Scaffold 05 Feb 2025 WELLCOME SANGER INSTITUTE 5,762,139,629 60.12 secondary amphibians 556 GCA_965140185.1 GCA_965140185.1_bAthNoc1.hap2.1 Athene noctua little owl (hap2.1 2025) 126797 SAMEA114594456 haploid Scaffold 13 Feb 2025 WELLCOME SANGER INSTITUTE 1,302,383,638 22.54 secondary birds 557 GCA_965140235.1 GCA_965140235.1_rCarCar1.hap1 Caretta caretta loggerhead turtle (hap1 2025) 8467 SAMN46282778 haploid Chromosome 13 Feb 2025 Vertebrate Genomes Project 2,217,236,305 34.66 primary reptiles 558 GCA_965140245.1 GCA_965140245.1_bAthNoc1.hap1.1 Athene noctua little owl (hap1.1 2025) 126797 SAMEA114594456 haploid Chromosome 13 Feb 2025 WELLCOME SANGER INSTITUTE 1,355,875,761 25.15 primary birds 559 GCA_965140255.1 GCA_965140255.1_rLepOli2.hap2 Lepidochelys olivacea Pacific ridley (hap2 2025) 27788 SAMN46283035 haploid Chromosome 13 Feb 2025 Vertebrate Genomes Project 2,208,046,144 34.74 secondary reptiles 560 GCA_965140265.1 GCA_965140265.1_rLepKem1.hap2 Lepidochelys kempii Atlantic ridley (rLepKem1 hap2 2025) 8472 SAMN46282779 haploid Chromosome 26 Mar 2025 Vertebrate Genomes Project 2,204,769,334 34.28 secondary reptiles 561 GCA_965140275.1 GCA_965140275.1_rCarCar1.hap2 Caretta caretta loggerhead turtle (hap2 2025) 8467 SAMN46282778 haploid Chromosome 13 Feb 2025 Vertebrate Genomes Project 2,206,382,585 34.41 secondary reptiles 562 GCA_965140285.1 GCA_965140285.1_rLepKem1.hap1 Lepidochelys kempii Atlantic ridley (rLepKem1 hap1 2025) 8472 SAMN46282779 haploid Chromosome 26 Mar 2025 Vertebrate Genomes Project 2,219,022,919 34.46 primary reptiles 563 GCA_965140295.1 GCA_965140295.1_rLepOli2.hap1 Lepidochelys olivacea Pacific ridley (hap1 2025) 27788 SAMN46283035 haploid Chromosome 13 Feb 2025 Vertebrate Genomes Project 2,206,585,630 34.74 primary reptiles 564 GCA_965140915.1 GCA_965140915.1_bAytMar2.hap1.1 Aythya marila greater scaup (hap1 2025) 189534 SAMEA115433010 haploid Chromosome 13 Feb 2025 WELLCOME SANGER INSTITUTE 1,224,533,240 26.48 primary birds 565 GCA_965140925.1 GCA_965140925.1_bAytMar2.hap2.1 Aythya marila greater scaup (hap2 2025) 189534 SAMEA115433010 haploid Scaffold 13 Feb 2025 WELLCOME SANGER INSTITUTE 1,053,096,367 22.77 secondary birds 566 GCA_965151615.1 GCA_965151615.1_bCygCol1.1 Cygnus columbianus tundra swan (primary hap 2025) 110926 SAMEA112468031 haploid (principal pseudohaplotype of diploid) Chromosome 15 Feb 2025 WELLCOME SANGER INSTITUTE 1,293,538,149 28.81 primary birds 567 GCA_965152195.1 GCA_965152195.1_rNatDep2.hap2 Natator depressus flatback sea turtle (hap2 2025) 27790 SAMN46282745 haploid Chromosome 16 Feb 2025 Vertebrate Genomes Project 2,130,756,730 43.66 secondary reptiles 568 GCA_965152235.1 GCA_965152235.1_rEreImb1.hap1 Eretmochelys imbricata hawksbill sea turtle (hap1 2025) 27787 SAMN46283036 haploid Chromosome 10 Apr 2025 Vertebrate Genomes Project 2,218,003,986 33.65 primary reptiles 569 GCA_965152275.1 GCA_965152275.1_rNatDep2.hap1 Natator depressus flatback sea turtle (hap1 2025) 27790 SAMN46282745 haploid Chromosome 16 Feb 2025 Vertebrate Genomes Project 2,173,446,978 43.63 primary reptiles 570 GCA_965152285.1 GCA_965152285.1_rEreImb1.hap2 Eretmochelys imbricata hawksbill sea turtle (hap2 2025) 27787 SAMN46283036 haploid Chromosome 16 Feb 2025 Vertebrate Genomes Project 2,224,324,466 34.07 secondary reptiles 571 GCA_965153285.1 GCA_965153285.1_rPodTil1.hap1.1 Podarcis tiliguerta Tyrrhenian wall lizard (hap1 2025) 65485 SAMEA114217799 haploid Chromosome 26 Feb 2025 WELLCOME SANGER INSTITUTE 1,462,327,121 37.08 primary reptiles 572 GCA_965153305.1 GCA_965153305.1_rPodTil1.hap2.1 Podarcis tiliguerta Tyrrhenian wall lizard (hap2 2025) 65485 SAMEA114217799 haploid Chromosome 26 Feb 2025 WELLCOME SANGER INSTITUTE 1,382,196,565 36.68 secondary reptiles 573 GCA_965178375.1 GCA_965178375.1_rPodLio1.hap2.1 Podarcis liolepis Columbretes wall lizard (hap2.1 2025) 662736 SAMEA114217798 haploid Scaffold 05 Mar 2025 WELLCOME SANGER INSTITUTE 1,478,082,625 39.29 secondary reptiles 574 GCA_965178535.1 GCA_965178535.1_bColMon1.hap2.1 Coloeus monedula jackdaw (hap2.1 2025) 30423 SAMEA115433023 haploid Chromosome 04 Mar 2025 WELLCOME SANGER INSTITUTE 1,109,102,816 24.68 secondary birds 575 GCA_965178545.1 GCA_965178545.1_bColMon1.hap1.1 Coloeus monedula jackdaw (hap1.1 2025) 30423 SAMEA115433023 haploid Chromosome 04 Mar 2025 WELLCOME SANGER INSTITUTE 1,263,996,688 26.93 primary birds 576 GCA_965183785.1 GCA_965183785.1_bPlaLeu2.hap2.1 Platalea leucorodia Eurasian spoonbill (hap2.1 2025) 257867 SAMEA112468120 haploid Scaffold 05 Mar 2025 WELLCOME SANGER INSTITUTE 1,190,439,839 22.31 secondary birds 577 GCA_965183815.1 GCA_965183815.1_bPlaLeu2.hap1.1 Platalea leucorodia Eurasian spoonbill (hap1.1 2025) 257867 SAMEA112468120 haploid Chromosome 04 Mar 2025 WELLCOME SANGER INSTITUTE 1,345,843,103 14.04 primary birds 578 GCA_965194725.1 GCA_965194725.1_mBalBor1.hap2.1 Balaenoptera borealis sei whale (hap2.1 2025) 9768 SAMEA114493134 haploid Scaffold 05 Mar 2025 WELLCOME SANGER INSTITUTE 2,988,821,750 46.53 secondary mammals 579 GCA_965194765.1 GCA_965194765.1_mBalPhy2.hap2.1 Balaenoptera physalus fin whale (hap2.1 2025) 9770 SAMEA114493136 haploid Scaffold 05 Mar 2025 WELLCOME SANGER INSTITUTE 2,850,212,336 45.83 secondary mammals 580 GCA_965194805.1 GCA_965194805.1_mBalBor1.hap1.1 Balaenoptera borealis sei whale (hap1.1 2025) 9768 SAMEA114493134 haploid Chromosome 10 Mar 2025 WELLCOME SANGER INSTITUTE 3,234,573,494 50.48 primary mammals 581 GCA_965194825.1 GCA_965194825.1_mBalPhy2.hap1.1 Balaenoptera physalus fin whale (hap1.1 2025) 9770 SAMEA114493136 haploid Chromosome 10 Mar 2025 WELLCOME SANGER INSTITUTE 3,442,554,901 52.41 primary mammals 582 GCA_965202575.1 GCA_965202575.1_ktThaDemo2.hap2.1 Thalia democratica tunicate T.democratica (hap2.1 2025) 34761 SAMEA111439782 haploid Scaffold 14 Mar 2025 WELLCOME SANGER INSTITUTE 790,658,053 59.91 secondary otherChordates 583 GCA_965202585.1 GCA_965202585.1_ktThaDemo2.hap1.1 Thalia democratica tunicate T.democratica (hap1.1 2025) 34761 SAMEA111439782 haploid Chromosome 14 Mar 2025 WELLCOME SANGER INSTITUTE 801,813,394 60.02 primary otherChordates 584 GCA_965203405.1 GCA_965203405.1_mPipPip2.hap1.1 Pipistrellus pipistrellus common pipistrelle (hap1.1 2025) 59474 SAMEA9921453 haploid Chromosome 15 Mar 2025 WELLCOME SANGER INSTITUTE 1,899,371,011 37.92 secondary mammals 585 GCA_965204225.1 GCA_965204225.1_mPipPip2.hap2.1 Pipistrellus pipistrellus common pipistrelle (hap2.1 2025) 59474 SAMEA9921453 haploid Scaffold 15 Mar 2025 WELLCOME SANGER INSTITUTE 1,854,961,430 36.43 secondary mammals 586 GCA_965207765.1 GCA_965207765.1_rZooViv2.hap1.1 Zootoca vivipara common lizard Z.vivipara (hap1.1 2025) 8524 SAMEA111528663 haploid Chromosome 15 Mar 2025 WELLCOME SANGER INSTITUTE 1,424,530,687 37.28 secondary reptiles 587 GCA_965208345.1 GCA_965208345.1_rZooViv2.hap2.1 Zootoca vivipara common lizard Z.vivipara (hap2.1 2025) 8524 SAMEA111528663 haploid Chromosome 15 Mar 2025 WELLCOME SANGER INSTITUTE 1,423,701,498 37.19 secondary reptiles 588 GCA_965225695.1 GCA_965225695.1_fPagPag1.hap2.1 Pagrus pagrus common seabream (hap2.1 2025) 8173 SAMEA110450108 haploid Scaffold 28 Mar 2025 WELLCOME SANGER INSTITUTE 786,794,581 26.85 secondary fish 589 GCA_965226115.1 GCA_965226115.1_fAulStu2.1 Aulonocara stuartgranti flavescent peacock cichlid (primary hap 2025) 286572 SAMEA112818851 haploid (principal pseudohaplotype of diploid) Chromosome 27 Mar 2025 WELLCOME SANGER INSTITUTE 945,383,024 33.28 primary fish 590 GCA_965226575.1 GCA_965226575.1_fPagPag1.hap1.1 Pagrus pagrus common seabream (hap1.1 2025) 8173 SAMEA110450108 haploid Chromosome 28 Mar 2025 WELLCOME SANGER INSTITUTE 825,699,107 29.37 primary fish 591 GCA_965231245.1 GCA_965231245.1_bZosLat1.hap2.1 Zosterops lateralis silver-eye (hap2.1 2025) 43581 SAMEA112953925 haploid Chromosome 28 Mar 2025 WELLCOME SANGER INSTITUTE 1,047,426,550 23.59 secondary birds 592 GCA_965231255.1 GCA_965231255.1_bVanVan1.hap1.1 Vanellus vanellus northern lapwing (hap1.1 2025) 100859 SAMEA113398832 haploid Chromosome 28 Mar 2025 WELLCOME SANGER INSTITUTE 1,476,623,026 25.35 primary birds 593 GCA_965231275.1 GCA_965231275.1_bZosLat1.hap1.1 Zosterops lateralis silver-eye (hap1.1 2025) 43581 SAMEA112953925 haploid Chromosome 28 Mar 2025 WELLCOME SANGER INSTITUTE 1,143,512,649 22.40 primary birds 594 GCA_965231335.1 GCA_965231335.1_bBraCan1.1 Branta canadensis Canada goose (primary hap 2025) 8853 SAMEA113398965 haploid (principal pseudohaplotype of diploid) Chromosome 29 Mar 2025 WELLCOME SANGER INSTITUTE 1,311,899,232 29.89 primary birds 595 GCF_000001405.40 GCF_000001405.40_GRCh38.p14 Homo sapiens human (GRCh38.p14 2022) 9606 (n/a) haploid-with-alt-loci Chromosome 03 Feb 2022 Genome Reference Consortium 3,298,430,636 50.25 secondary primates 596 GCF_003369695.1 GCF_003369695.1_UOA_Brahman_1 Bos indicus x Bos taurus hybrid cattle (Angus x Brahman F1 Brahman haplotype 2018) 30522 SAMN08473802 haploid Chromosome 30 Nov 2018 University of Adelaide 2,680,953,056 47.57 primary mammals 597 GCF_003957555.1 GCF_003957555.1_bCalAnn1_v1.p Calypte anna Anna's hummingbird (BGI_N300 2019 refseq) 9244 SAMN02265252 haploid (principal pseudohaplotype of diploid) Chromosome 16 May 2019 Vertebrate Genomes Project 1,059,687,259 11.09 primary birds 598 GCF_004027225.2 GCF_004027225.2_bStrHab1.2.pri Strigops habroptila kakapo (v2 Jane 2020 refseq) 2489341 SAMN09948751 haploid Chromosome 04 Mar 2020 Vertebrate Genomes Project 1,148,597,545 10.18 primary birds 599 GCF_004115215.2 GCF_004115215.2_mOrnAna1.pri.v4 Ornithorhynchus anatinus platypus (Pmale09 v4 2020) 9258 SAMN08537700 haploid (principal pseudohaplotype of diploid) Chromosome 06 Nov 2020 Vertebrate Genomes Project 1,859,281,927 50.98 primary mammals 600 GCF_004115265.2 GCF_004115265.2_mRhiFer1_v1.p Rhinolophus ferrumequinum greater horseshoe bat (v2 MPI-CBG 2019) 59479 SAMN09948510 haploid Chromosome 16 May 2019 Vertebrate Genomes Project 2,075,768,562 34.43 primary mammals 601 GCF_004126475.2 GCF_004126475.2_mPhyDis1.pri.v3 Phyllostomus discolor pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 primary hap 2020) 89673 SAMN09948786 haploid (principal pseudohaplotype of diploid) Chromosome 12 May 2020 Vertebrate Genomes Project 2,108,832,841 30.92 primary mammals 602 GCF_007364275.1 GCF_007364275.1_fArcCen1 Archocentrus centrarchus flier cichlid (MPI-CPG 2019 refseq) 63155 SAMN09948522 haploid (principal pseudohaplotype of diploid) Chromosome 01 Aug 2019 Vertebrate Genomes Project 932,930,362 37.61 primary fish 603 GCF_007399415.2 GCF_007399415.2_rGopEvg1_v1.p Gopherus evgoodei Goodes thornscrub tortoise (Sinaloan 2019) 1825980 SAMN03496275 haploid (principal pseudohaplotype of diploid) Chromosome 25 Jul 2019 Vertebrate Genomes Project 2,298,564,209 44.65 primary reptiles 604 GCF_007474595.2 GCF_007474595.2_mLynCan4.pri.v2 Lynx canadensis Canada lynx (LIC74 v2 primary hap 2020) 61383 SAMN09948483 haploid (principal pseudohaplotype of diploid) Chromosome 14 Jul 2020 Vertebrate Genomes Project 2,407,810,255 43.72 primary mammals 605 GCF_008692025.1 GCF_008692025.1_mPhoSin1.pri Phocoena sinus vaquita (mPhoSin1 2019) 42100 SAMN12325353 haploid (principal pseudohaplotype of diploid) Chromosome 26 Sep 2019 Vertebrate Genomes Project 2,371,524,154 44.14 primary mammals 606 GCF_008822105.2 GCF_008822105.2_bTaeGut2.pat.W.v2 Taeniopygia guttata zebra finch (Blue55 paternal W 2020) 59729 SAMN09946140 haploid Chromosome 12 Feb 2020 Vertebrate Genomes Project 1,068,988,106 10.50 secondary birds 607 GCF_009650955.1 GCF_009650955.1_bCorMon1.pri Corvus moneduloides New Caledonian crow (primary hap 2019) 1196302 SAMN12368441 haploid (principal pseudohaplotype of diploid) Chromosome 14 Nov 2019 Vertebrate Genomes Project 1,112,734,094 10.34 primary birds 608 GCF_009762305.2 GCF_009762305.2_mZalCal1.pri.v2 Zalophus californianus California sea lion (v2 primary hap 2020) 9704 SAMN12368149 haploid (principal pseudohaplotype of diploid) Chromosome 14 Jul 2020 Vertebrate Genomes Project 2,409,685,272 43.36 primary mammals 609 GCF_009762535.1 GCF_009762535.1_fNotCel1.pri Notolabrus celidotus New Zealand spotty (primary hap refseq) 1203425 SAMN12623201 haploid (principal pseudohaplotype of diploid) Chromosome 18 Dec 2019 Vertebrate Genomes Project 846,744,125 35.73 primary fish 610 GCF_009764475.1 GCF_009764475.1_sPriPec2.1.pri Pristis pectinata smalltooth sawfish (v2.1 primary hap 2019 refseq) 685728 SAMN12629505 haploid (principal pseudohaplotype of diploid) Chromosome 19 Dec 2019 Vertebrate Genomes Project 2,267,840,987 54.48 primary sharks 611 GCF_009764565.3 GCF_009764565.3_rDerCor1.pri.v4 Dermochelys coriacea leatherback sea turtle (v4 primary hap 2021 refseq) 27794 SAMN12629498 haploid (principal pseudohaplotype of diploid) Chromosome 25 Aug 2021 G10K 2,164,762,090 43.87 primary reptiles 612 GCF_009769535.1 GCF_009769535.1_rThaEle1.pri Thamnophis elegans western terrestrial garter snake (primary hap 2019) 35005 SAMN12629499 haploid (principal pseudohaplotype of diploid) Chromosome 23 Dec 2019 Vertebrate Genomes Project 1,672,190,305 47.87 primary reptiles 613 GCF_009769545.1 GCF_009769545.1_fCycLum1.pri Cyclopterus lumpus lumpfish (v1 primary hap 2019 refseq) 8103 SAMN12629502 haploid (principal pseudohaplotype of diploid) Chromosome 23 Dec 2019 Vertebrate Genomes Project 572,885,595 22.40 primary fish 614 GCF_009769625.2 GCF_009769625.2_bCygOlo1.pri.v2 Cygnus olor mute swan (v2 primary hap 2021) 8869 SAMN12621369 haploid (principal pseudohaplotype of diploid) Chromosome 31 Mar 2021 Vertebrate Genomes Project 1,134,186,642 9.34 primary birds 615 GCF_009819535.1 GCF_009819535.1_rLacAgi1.pri Lacerta agilis sand lizard (primary hap 2019) 80427 SAMN12629509 haploid (principal pseudohaplotype of diploid) Chromosome 31 Dec 2019 Vertebrate Genomes Project 1,391,404,169 40.49 primary reptiles 616 GCF_009819655.1 GCF_009819655.1_bSylAtr1.pri Sylvia atricapilla blackcap (primary hap 2019 refseq) 48155 SAMN12369542 haploid (principal pseudohaplotype of diploid) Chromosome 31 Dec 2019 Vertebrate Genomes Project 1,066,804,524 19.80 primary birds 617 GCF_009819705.1 GCF_009819705.1_fHipHip1.pri Hippoglossus hippoglossus Atlantic halibut (2019 refseq) 8267 SAMN12629501 haploid (principal pseudohaplotype of diploid) Chromosome 31 Dec 2019 Vertebrate Genomes Project 596,792,615 21.93 primary fish 618 GCF_009819795.1 GCF_009819795.1_bAytFul2.pri Aythya fuligula tufted duck (2019) 219594 SAMN12621346 haploid (principal pseudohaplotype of diploid) Chromosome 31 Dec 2019 Vertebrate Genomes Project 1,127,004,725 10.97 primary birds 619 GCF_009819885.2 GCF_009819885.2_bCatUst1.pri.v2 Catharus ustulatus Swainson's thrush (v2 primary hap 2020) 91951 SAMN12618602 haploid (principal pseudohaplotype of diploid) Chromosome 22 Dec 2020 Vertebrate Genomes Project 1,131,616,530 12.18 primary birds 620 GCF_009829125.3 GCF_009829125.3_fPerMag1.2.pri Periophthalmus magnuspinnatus Korean giant-fin mudskipper (v1.2 primary hap 2023) 409849 SAMN12629500 haploid (principal pseudohaplotype of diploid) Chromosome 21 Mar 2023 Vertebrate Genomes Project 752,605,561 43.07 primary fish 621 GCF_009829145.1 GCF_009829145.1_bChiLan1.pri Chiroxiphia lanceolata lance-tailed manakin (2020) 296741 SAMN12620979 haploid (principal pseudohaplotype of diploid) Chromosome 03 Jan 2020 Vertebrate Genomes Project 1,089,631,598 9.68 primary birds 622 GCF_009829155.1 GCF_009829155.1_mMusErm1.Pri Mustela erminea ermine (2020) 36723 SAMN12611999 haploid (principal pseudohaplotype of diploid) Chromosome 03 Jan 2020 Vertebrate Genomes Project 2,445,217,270 41.13 primary mammals 623 GCF_009873245.2 GCF_009873245.2_mBalMus1.pri.v3 Balaenoptera musculus blue whale (JJ_BM4_2016_0621 v3 primary hap 2020) 9771 SAMN12287136 haploid (principal pseudohaplotype of diploid) Chromosome 02 Oct 2020 G10K 2,374,868,943 43.76 primary mammals 624 GCF_010909765.2 GCF_010909765.2_sAmbRad1.1.pri Amblyraja radiata thorny skate (v1.1 primary hap CabotCenter1 2020) 386614 SAMN09948523 haploid (principal pseudohaplotype of diploid) Chromosome 21 Feb 2020 Vertebrate Genomes Project 2,558,784,953 60.99 primary sharks 625 GCF_010993605.1 GCF_010993605.1_kPetMar1.pri Petromyzon marinus sea lamprey (primary hap 2020) 7757 SAMN12629506 haploid (principal pseudohaplotype of diploid) Chromosome 24 Feb 2020 Vertebrate Genomes Project 1,089,050,413 55.78 secondary otherChordates 626 GCF_011004845.1 GCF_011004845.1_fEsoLuc1.pri Esox lucius northern pike (primary hap 2020 refseq) 8010 SAMN12623624 haploid (principal pseudohaplotype of diploid) Chromosome 05 Mar 2020 Vertebrate Genomes Project 918,748,614 42.12 primary fish 627 GCF_011100635.1 GCF_011100635.1_mTriVul1.pri Trichosurus vulpecula common brushtail (refseq 2020) 9337 SAMN12629507 haploid (principal pseudohaplotype of diploid) Chromosome 10 Mar 2020 Vertebrate Genomes Project 3,359,347,707 53.13 primary mammals 628 GCF_011100685.1 GCF_011100685.1_UU_Cfam_GSD_1.0 Canis lupus familiaris dog (German shepard Mischka 2020) 9615 SAMN13230619 haploid Chromosome 10 Mar 2020 Uppsala University 2,481,983,352 43.95 primary mammals 629 GCF_011762595.1 GCF_011762595.1_mTurTru1.mat.Y Tursiops truncatus common bottlenose dolphin (maternal Y refseq 2020) 9739 SAMN12326775 haploid Chromosome 27 Mar 2020 Vertebrate Genomes Project 2,378,522,213 46.09 primary mammals 630 GCF_012275295.1 GCF_012275295.1_bMelUnd1.mat.Z Melopsittacus undulatus budgerigar (maternal Z 2020 refseq) 13146 SAMN12623090 haploid Chromosome 13 Apr 2020 G10K 1,171,617,451 13.67 primary birds 631 GCF_013347855.1 GCF_013347855.1_fAngAng1.pri Anguilla anguilla European eel (primary hap 2020 refseq) 7936 SAMN12623627 haploid (principal pseudohaplotype of diploid) Chromosome 18 Jun 2020 Vertebrate Genomes Project 979,045,926 25.96 primary fish 632 GCF_013368585.1 GCF_013368585.1_fMegCyp1.pri Megalops cyprinoides Indo-Pacific tarpon (2020) 118141 SAMN12623619 haploid (principal pseudohaplotype of diploid) Chromosome 23 Jun 2020 Vertebrate Genomes Project 959,258,046 17.62 primary fish 633 GCF_013368605.1 GCF_013368605.1_bNycGra1.pri Nyctibius grandis great potoo (primary hap 2020 refseq) 48427 SAMN12622411 haploid (principal pseudohaplotype of diploid) Chromosome 23 Jun 2020 Vertebrate Genomes Project 1,256,393,467 23.97 primary birds 634 GCF_014108235.1 GCF_014108235.1_mMyoMyo1.p Myotis myotis greater mouse-eared bat (2020 Bat1K) 51298 SAMN14734277 haploid Scaffold 07 Aug 2020 Bat1K 2,002,797,769 35.59 primary mammals 635 GCF_014108245.1 GCF_014108245.1_mPipKuh1.p Pipistrellus kuhlii Kuhl's pipistrelle (2020) 59472 SAMN14734388 haploid Scaffold 07 Aug 2020 Bat1K 1,775,688,541 32.54 primary mammals 636 GCF_014108415.1 GCF_014108415.1_mMolMol1.p Molossus molossus Pallas's mastiff bat 27622 SAMN14734448 haploid Scaffold 07 Aug 2020 Bat1K 2,315,568,481 36.33 primary mammals 637 GCF_014176215.1 GCF_014176215.1_mRouAeg1.p Rousettus aegyptiacus Egyptian rousette (v1 2020 refseq) 9407 SAMN14734550 haploid Scaffold 07 Aug 2020 Bat1K 1,893,602,072 32.62 primary mammals 638 GCF_014839835.1 GCF_014839835.1_bDryPub1.pri Dryobates pubescens downy woodpecker (primary hap 2020) 118200 SAMN12629497 haploid (principal pseudohaplotype of diploid) Chromosome 02 Oct 2020 Vertebrate Genomes Project 1,187,939,694 32.06 primary birds 639 GCF_015220075.1 GCF_015220075.1_bFalRus1.pri Falco rusticolus gyrfalcon (primary hap 2020) 120794 SAMN12629496 haploid (principal pseudohaplotype of diploid) Chromosome 03 Nov 2020 Vertebrate Genomes Project 1,195,847,496 7.15 primary birds 640 GCF_015220235.1 GCF_015220235.1_mChoDid1.pri Choloepus didactylus southern two-toed sloth (mChoDid1 primary hap 2020) 27675 SAMN12612024 haploid (principal pseudohaplotype of diploid) Chromosome 03 Nov 2020 Vertebrate Genomes Project 3,214,702,648 45.70 primary mammals 641 GCF_015220715.1 GCF_015220715.1_fPygNat1.pri Pygocentrus nattereri red-bellied piranha (primary hap 2020) 42514 SAMN12623623 haploid (principal pseudohaplotype of diploid) Chromosome 03 Nov 2020 Vertebrate Genomes Project 1,222,050,449 47.79 primary fish 642 GCF_015220745.1 GCF_015220745.1_fSebUmb1.pri Sebastes umbrosus honeycomb rockfish (primary hap 2020) 72105 SAMN12629503 haploid (principal pseudohaplotype of diploid) Chromosome 03 Nov 2020 Vertebrate Genomes Project 800,904,020 39.57 primary fish 643 GCF_015220805.1 GCF_015220805.1_bPogPus1.pri Pogoniulus pusillus red-fronted tinkerbird (primary hap 2020 refseq) 488313 SAMN15098508 haploid (principal pseudohaplotype of diploid) Chromosome 03 Nov 2020 Vertebrate Genomes Project 1,272,338,968 35.91 primary birds 644 GCF_015227675.2 GCF_015227675.2_mRatBN7.2 Rattus norvegicus Norway rat BN7.2 10116 SAMN16261960 haploid (principal pseudohaplotype of diploid) Chromosome 10 Nov 2020 Wellcome Sanger Institute 2,647,915,728 45.26 primary mammals 645 GCF_015227805.1 GCF_015227805.1_bHirRus1.pri.v2 Hirundo rustica barn swallow (v2 primary hap 2021 refseq) 43150 SAMN14675488 haploid (principal pseudohaplotype of diploid) Chromosome 02 Mar 2021 Vertebrate Genomes Project 1,105,955,550 12.93 primary birds 646 GCF_015237465.2 GCF_015237465.2_rCheMyd1.pri.v2 Chelonia mydas green sea turtle (v2 primary hap 2021) 8469 SAMN12612360 haploid (principal pseudohaplotype of diploid) Chromosome 15 Jul 2021 Vertebrate Genomes Project 2,134,375,114 42.38 primary reptiles 647 GCF_015476345.1 GCF_015476345.1_ZJU1.0 Anas platyrhynchos mallard (Pekin duck Z2 2020 Zhejiang U) 8839 SAMN15588841 haploid Chromosome 23 Nov 2020 Zhejiang University 1,188,533,289 13.99 secondary birds 648 GCF_015852505.1 GCF_015852505.1_mTacAcu1.pri Tachyglossus aculeatus Australian echidna (mTacAcu1 primary hap 2020) 9261 SAMN12634963 haploid (principal pseudohaplotype of diploid) Chromosome 09 Dec 2020 Vertebrate Genomes Project 2,213,004,214 59.74 primary mammals 649 GCF_016699485.2 GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b Gallus gallus chicken white leghorn layer X broiler (v2 broiler haplotype 2021 2021) 9031 SAMN15960293 haploid Chromosome 19 Jan 2021 Vertebrate Genomes Project 1,053,332,251 13.94 secondary birds 650 GCF_016700215.2 GCF_016700215.2_bGalGal1.pat.whiteleghornlayer.GRCg7w Gallus gallus white leghorn X broiler chicken (v2 leghorn haplotype 2021) 9031 SAMN15960293 alternate-pseudohaplotype Chromosome 01 Oct 2021 Vertebrate Genomes Project 1,050,511,239 13.67 primary birds 651 GCF_017639515.1 GCF_017639515.1_sCarCar2.pri Carcharodon carcharias great white shark (primary hap 2021) 13397 SAMN12629504 haploid (principal pseudohaplotype of diploid) Chromosome 30 Mar 2021 Vertebrate Genomes Project 4,286,311,191 60.33 primary sharks 652 GCF_017639655.2 GCF_017639655.2_bFalNau1.pat Falco naumanni lesser kestrel (v2 2021) 148594 SAMN16870685 haploid (principal pseudohaplotype of diploid) Chromosome 30 Mar 2021 Vertebrate Genomes Project 1,215,719,661 8.36 primary birds 653 GCF_017639745.1 GCF_017639745.1_fMelBoe1.pri Melanotaenia boesemani Boeseman's rainbowfish (primary hap 2021) 1250792 SAMN12623618 haploid (principal pseudohaplotype of diploid) Chromosome 30 Mar 2021 Vertebrate Genomes Project 865,592,457 35.21 primary fish 654 GCF_017976325.1 GCF_017976325.1_fCheRos1.pri Chelmon rostratus copperband butterflyfish (primary hap 2021) 109905 SAMN12623620 haploid (principal pseudohaplotype of diploid) Chromosome 15 Apr 2021 Vertebrate Genomes Project 644,208,431 21.56 primary fish 655 GCF_017976375.1 GCF_017976375.1_bCucCan1.pri Cuculus canorus common cuckoo (bCucCan1 primary hap 2021 refseq) 55661 SAMN12629508 haploid (principal pseudohaplotype of diploid) Chromosome 15 Apr 2021 Vertebrate Genomes Project 1,180,136,575 21.81 primary birds 656 GCF_017976425.1 GCF_017976425.1_fToxJac2.pri Toxotes jaculatrix banded archerfish (primary hap 2021 refseq) 941984 SAMN18445299 haploid (principal pseudohaplotype of diploid) Chromosome 15 Apr 2021 Vertebrate Genomes Project 621,503,431 24.27 primary fish 657 GCF_018492685.1 GCF_018492685.1_fAloSap1.pri Alosa sapidissima American shad (primary hap 2021) 34773 SAMN18857608 haploid (principal pseudohaplotype of diploid) Chromosome 25 May 2021 Vertebrate Genomes Project 903,581,644 43.55 primary fish 658 GCF_019393635.1 GCF_019393635.1_mDroGli1.pri Dromiciops gliroides monito del monte (primary hap 2021 refseq) 33562 SAMN18857598 haploid (principal pseudohaplotype of diploid) Chromosome 03 Aug 2021 Vertebrate Genomes Project 3,303,199,800 52.19 primary mammals 659 GCF_020382885.2 GCF_020382885.2_fScaArg1.pri Scatophagus argus butterfish (primary hap 2021) 75038 SAMN12623616 haploid (principal pseudohaplotype of diploid) Chromosome 13 Oct 2021 G10K 570,802,272 16.69 primary fish 660 GCF_020740605.2 GCF_020740605.2_mLemCat1.pri Lemur catta ring-tailed lemur (primary hap 2021) 9447 SAMN12621102 haploid (principal pseudohaplotype of diploid) Chromosome 04 Nov 2021 Vertebrate Genomes Project 2,245,601,549 37.86 primary primates 661 GCF_020740685.1 GCF_020740685.1_mJacJac1.mat.Y.cur Jaculus jaculus lesser Egyptian jerboa (2021) 51337 SAMN20391724 haploid (principal pseudohaplotype of diploid) Chromosome 04 Nov 2021 Vertebrate Genomes Project 2,863,865,261 46.85 primary mammals 662 GCF_020740725.1 GCF_020740725.1_bCorHaw1.pri.cur Corvus hawaiiensis Hawaiian crow (primary hap 2021 refseq) 134902 SAMN22550278 haploid (principal pseudohaplotype of diploid) Chromosome 04 Nov 2021 Vertebrate Genomes Project 1,151,611,379 15.50 primary birds 663 GCF_020740795.1 GCF_020740795.1_bApuApu2.pri.cur Apus apus common swift (primary hap 2021 refseq) 8895 SAMN22785356 haploid (principal pseudohaplotype of diploid) Chromosome 04 Nov 2021 Vertebrate Genomes Project 1,100,378,261 11.14 primary birds 664 GCF_020745735.1 GCF_020745735.1_sHemOce1.pat.X.cur. Hemiscyllium ocellatum epaulette shark (primary hap 2021 refseq) 170820 SAMN22550098 haploid (principal pseudohaplotype of diploid) Chromosome 05 Nov 2021 Vertebrate Genomes Project 3,983,466,396 62.70 primary sharks 665 GCF_020745825.1 GCF_020745825.1_Agelaius_phoeniceus_1.1 Agelaius phoeniceus red-winged blackbird (BioBank_ID:100140 2023) 39638 SAMN19590559 haploid Chromosome 15 Mar 2023 Brood Parasitic Bird Genomes Consortium 1,188,547,179 25.46 primary birds 666 GCF_020826845.1 GCF_020826845.1_mDicBic1.mat.cur Diceros bicornis minor black rhinoceros (primary hap 2021 refseq) 77932 SAMN22047685 haploid (principal pseudohaplotype of diploid) Chromosome 10 Nov 2021 Vertebrate Genomes Project 3,005,535,620 45.55 primary mammals 667 GCF_021462225.1 GCF_021462225.1_DD_fGirMul_XY1 Girardinichthys multiradiatus dark-edged splitfin (DD_20200921_A 2022 refseq) 208333 SAMN22242658 haploid Chromosome 24 Feb 2022 Max Planck Institute of Molecular Cell Biology and Genetics 1,150,004,004 50.12 primary fish 668 GCF_023053635.1 GCF_023053635.1_rElgMul1.1.pri Elgaria multicarinata webbii San Diego alligator lizard (v1.1 HBS135686 primary hap 2024 refseq) 159646 SAMN25872353 haploid (principal pseudohaplotype of diploid) Chromosome 04 Jan 2024 UCLA 1,790,500,004 40.44 primary reptiles 669 GCF_023343835.1 GCF_023343835.1_bLagMut1_primary Lagopus muta rock ptarmigan (primary hap 2022 refseq) 64668 SAMN25144835 haploid (principal pseudohaplotype of diploid) Chromosome 12 May 2022 Vertebrate Genomes Project 1,026,771,810 13.09 primary birds 670 GCF_023375975.1 GCF_023375975.1_AstMex3_surface Astyanax mexicanus Mexican tetra (ESR-SI-001 2022) 7994 SAMN25965548 haploid Chromosome 19 May 2022 University of Missouri 1,373,169,186 51.65 primary fish 671 GCF_023634085.1 GCF_023634085.1_bFalChe1.pri Falco cherrug Saker falcon (primary hap 2022 refseq) 345164 SAMN28688204 haploid (principal pseudohaplotype of diploid) Chromosome 02 Jun 2022 Vertebrate Genomes Project 1,309,385,023 14.22 primary birds 672 GCF_023634155.1 GCF_023634155.1_bFalPer1.pri Falco peregrinus peregrine falcon (bFalPer1 primary hap 2022 refseq) 8954 SAMN28688290 haploid (principal pseudohaplotype of diploid) Chromosome 02 Jun 2022 Vertebrate Genomes Project 1,311,598,859 15.18 primary birds 673 GCF_023638135.1 GCF_023638135.1_bFalBia1.pri Falco biarmicus lanner falcon (bFalBia1 primary hap 2022 refseq) 345155 SAMN28688289 haploid (principal pseudohaplotype of diploid) Chromosome 02 Jun 2022 Vertebrate Genomes Project 1,285,492,283 14.01 primary birds 674 GCF_024139225.1 GCF_024139225.1_mSunEtr1.pri.cur Suncus etruscus white-toothed pygmy shrew (mSunEtr1 primary hap 2022) 109475 SAMN28420931 haploid (principal pseudohaplotype of diploid) Chromosome 06 Jul 2022 Vertebrate Genomes Project 2,471,666,657 46.06 primary mammals 675 GCF_024166365.1 GCF_024166365.1_mEleMax1_primary_haplotype Elephas maximus indicus Asiatic elephant (mEleMax1 primary hap 2022) 99487 SAMN29174328 haploid (principal pseudohaplotype of diploid) Chromosome 06 Jul 2022 Vertebrate Genomes Project 3,401,247,148 51.18 primary mammals 676 GCF_025201925.1 GCF_025201925.1_rGopFla2.mat.asm Gopherus flavomarginatus Mexican gopher tortoise (WGS:JAMKFC01 2022) 286002 SAMN24199108 haploid (maternal haplotype of diploid) Chromosome 15 Sep 2022 Vertebrate Genomes Project 2,460,542,086 45.83 primary reptiles 677 GCF_025265405.1 GCF_025265405.1_mMesDen1_primary_haplotype Mesoplodon densirostris Blainville's beaked whale (primary hap 2022 refseq) 48708 SAMN29828597 haploid (principal pseudohaplotype of diploid) Chromosome 19 Sep 2022 Vertebrate Genomes Project 2,683,391,478 43.15 primary mammals 678 GCF_026419915.1 GCF_026419915.1_bHarHar1_primary_haplotype Harpia harpyja Harpy eagle (primary hap 2022 refseq) 202280 SAMN31530492 haploid (principal pseudohaplotype of diploid) Chromosome 27 Nov 2022 Vertebrate Genomes Project 1,351,447,071 16.24 primary birds 679 GCF_026419965.1 GCF_026419965.1_mKogBre1_haplotype_1 Kogia breviceps pygmy sperm whale (haplotype 1 2022 refseq) 27615 SAMN31719513 haploid Chromosome 27 Nov 2022 Vertebrate Genomes Project 2,555,855,246 40.78 primary mammals 680 GCF_026979565.1 GCF_026979565.1_bVidCha1_merged_haplotype Vidua chalybeata village indigobird (merged hap OUT-0048 2022 refseq) 81927 SAMN12254000 haploid Chromosome 21 Dec 2022 Vertebrate Genomes Project 1,080,440,577 20.96 primary birds 681 GCF_027172205.1 GCF_027172205.1_rPodRaf1.pri Podarcis raffonei Aeolian wall lizard (La Canna islet primary hap 2022 refseq) 65483 SAMN28455423 haploid (principal pseudohaplotype of diploid) Chromosome 27 Dec 2022 Vertebrate Genomes Project 1,513,131,503 44.63 primary reptiles 682 GCF_027358585.1 GCF_027358585.1_fPanHyp1.pri Pangasianodon hypophthalmus striped catfish (primary hap 2022 refseq) 310915 SAMN32348883 haploid (principal pseudohaplotype of diploid) Chromosome 28 Dec 2022 Vertebrate Genomes Project 764,974,446 37.93 primary fish 683 GCF_027358695.1 GCF_027358695.1_aSpeBom1.2.pri Spea bombifrons plains spadefoot toad (primary hap 2022) 233779 SAMN28408467 haploid (principal pseudohaplotype of diploid) Chromosome 27 Dec 2022 Vertebrate Genomes Project 987,655,159 39.22 primary amphibians 684 GCF_027406575.1 GCF_027406575.1_mNycCou1.pri Nycticebus coucang slow loris (primary hap 2022) 9470 SAMN28408555 haploid (principal pseudohaplotype of diploid) Chromosome 28 Dec 2022 Vertebrate Genomes Project 2,917,154,053 43.15 primary primates 685 GCF_027409185.1 GCF_027409185.1_mCynVol1.pri Cynocephalus volans Philippine flying lemur (primary hap 2022 refseq) 110931 SAMN32206947 haploid (principal pseudohaplotype of diploid) Chromosome 28 Dec 2022 Vertebrate Genomes Project 2,814,418,120 39.52 primary mammals 686 GCF_027409825.1 GCF_027409825.1_fScoJap1.pri Scomber japonicus chub mackerel (primary hap 2022 refseq) 13676 SAMN32224830 haploid (principal pseudohaplotype of diploid) Chromosome 28 Dec 2022 Vertebrate Genomes Project 828,681,152 32.04 primary fish 687 GCF_027477595.1 GCF_027477595.1_bHaeMex1.pri Haemorhous mexicanus house finch (primary hap 2022 refseq) 30427 SAMN28453576 haploid (principal pseudohaplotype of diploid) Chromosome 29 Dec 2022 Vertebrate Genomes Project 1,148,233,018 15.56 primary birds 688 GCF_027574615.1 GCF_027574615.1_DD_ASM_mEF_20220401 Eptesicus fuscus big brown bat (TK198812 2023) 29078 SAMN30608903 haploid Chromosome 09 Jan 2023 Bat1K 2,008,057,866 37.06 primary mammals 689 GCF_027579445.1 GCF_027579445.1_bAmmNel1.pri Ammospiza nelsoni Nelson's sparrow (bAmmNel1 primary hap 2023 refseq) 2857394 SAMN28421656 haploid (principal pseudohaplotype of diploid) Chromosome 09 Jan 2023 Vertebrate Genomes Project 1,185,463,352 19.51 primary birds 690 GCF_027579695.1 GCF_027579695.1_fNeoGra1.pri Neoarius graeffei lesser salmon catfish (primary hap 2023 refseq) 443677 SAMN28453209 haploid (principal pseudohaplotype of diploid) Chromosome 09 Jan 2023 Vertebrate Genomes Project 2,341,916,362 71.56 primary fish 691 GCF_027579735.1 GCF_027579735.1_aBomBom1.pri Bombina bombina fire-bellied toad (primary hap 2023 refseq) 8345 SAMN32378350 haploid (principal pseudohaplotype of diploid) Chromosome 09 Jan 2023 Vertebrate Genomes Project 10,019,663,791 69.42 primary amphibians 692 GCF_027595985.1 GCF_027595985.1_mSorAra2.pri Sorex araneus European shrew (primary hap 2023) 42254 SAMN32477717 haploid (principal pseudohaplotype of diploid) Chromosome 09 Jan 2023 Vertebrate Genomes Project 2,405,993,548 40.85 primary mammals 693 GCF_027789765.1 GCF_027789765.1_aDenEbr1.pat Dendropsophus ebraccatus hourglass treefrog (paternal 2023 refseq) 150705 SAMN32145295 haploid (paternal haplotype of diploid) Chromosome 13 Jan 2023 Vertebrate Genomes Project 2,214,937,069 51.44 primary amphibians 694 GCF_027887145.1 GCF_027887145.1_bAmmCau1.pri Ammospiza caudacuta saltmarsh sparrow (bAmmCau1 primary hap 2023 refseq) 2857398 SAMN28421630 haploid (principal pseudohaplotype of diploid) Chromosome 18 Jan 2023 Vertebrate Genomes Project 1,241,209,685 22.91 primary birds 695 GCF_027887155.1 GCF_027887155.1_rMalTer1.hap1 Malaclemys terrapin pileata diamondback terrapin (hap1 2023 refseq) 2991368 SAMN31394215 haploid Chromosome 18 Jan 2023 Vertebrate Genomes Project 2,211,221,380 46.30 primary reptiles 696 GCF_027887165.1 GCF_027887165.1_mMonDom1.pri Monodelphis domestica gray short-tailed opossum (mMonDom1 primary hap 2023 refseq) 13616 SAMN31801966 haploid (principal pseudohaplotype of diploid) Chromosome 18 Jan 2023 Vertebrate Genomes Project 3,586,166,573 53.23 primary mammals 697 GCF_028017835.1 GCF_028017835.1_rEmyOrb1.hap1 Emys orbicularis European pond turtle (hap1 2023 refseq) 82168 SAMN31805221 haploid (haplotype 1) Chromosome 30 Jan 2023 Vertebrate Genomes Project 2,309,740,635 45.64 primary reptiles 698 GCF_028018385.1 GCF_028018385.1_mNeoNeb1.pri Neofelis nebulosa clouded leopard (mNeoNeb1 primary hap 2023 refseq) 61452 SAMN31801981 haploid (principal pseudohaplotype of diploid) Chromosome 31 Jan 2023 Vertebrate Genomes Project 2,468,345,093 34.87 primary mammals 699 GCF_028018845.1 GCF_028018845.1_bMelGeo1.pri Melospiza georgiana swamp sparrow (bMelGeo1 primary hap 2023 refseq) 44398 SAMN22787412 haploid (principal pseudohaplotype of diploid) Chromosome 31 Jan 2023 Vertebrate Genomes Project 1,162,015,399 18.35 primary birds 700 GCF_028021215.1 GCF_028021215.1_mEscRob2.pri Eschrichtius robustus grey whale (primary hap 2023 refseq) 9764 SAMN32629250 haploid (principal pseudohaplotype of diploid) Chromosome 31 Jan 2023 Vertebrate Genomes Project 2,982,418,581 46.11 primary mammals 701 GCF_028023285.1 GCF_028023285.1_mBalRic1.hap2 Balaenoptera ricei Rice's whale (hap2 2023 refseq) 2746895 SAMN32629060 haploid Chromosome 30 Jan 2023 Vertebrate Genomes Project 2,678,442,663 41.79 primary mammals 702 GCF_028372415.1 GCF_028372415.1_mMacEug1.pri_v2 Notamacropus eugenii tammar wallaby (v2 primary hap 2023 refseq) 9315 SAMN28408687 haploid (principal pseudohaplotype of diploid) Chromosome 06 Feb 2023 Vertebrate Genomes Project 3,447,464,908 39.54 primary mammals 703 GCF_028389875.1 GCF_028389875.1_bPtePen1.pri Rhea pennata lesser rhea (bPtePen1 primary hap 2023 refseq) 8795 SAMN32606345 haploid (principal pseudohaplotype of diploid) Chromosome 06 Feb 2023 Vertebrate Genomes Project 1,269,016,774 22.80 primary birds 704 GCF_028390025.1 GCF_028390025.1_aPseCor3.hap2 Pseudophryne corroboree corroboree frog (hap2 2023 refseq) 495146 SAMN32631236 haploid Chromosome 06 Feb 2023 Vertebrate Genomes Project 8,872,758,793 74.73 primary amphibians 705 GCF_028500815.1 GCF_028500815.1_bRisTri1.patW.cur.20221130 Rissa tridactyla black-legged kittiwake (bRisTri1 2023 refseq) 75485 SAMN32104255 haploid (paternal haplotype of diploid) Chromosome 09 Feb 2023 Vertebrate Genomes Project 1,353,621,101 18.09 primary birds 706 GCF_028564815.1 GCF_028564815.1_mEubGla1.1.hap2._XY Eubalaena glacialis North Atlantic right whale (hap2 + XY 2023 refseq) 27606 SAMN32746534 haploid Chromosome 09 Feb 2023 Vertebrate Genomes Project 2,843,691,573 44.66 primary mammals 707 GCF_028583425.1 GCF_028583425.1_MPM_Emac_v1.0 Eublepharis macularius leopard gecko (TG4126 2023) 481883 SAMN31016422 haploid Chromosome 10 Feb 2023 Milwaukee Public Museum 2,237,397,408 37.92 primary reptiles 708 GCF_028858705.1 GCF_028858705.1_bGruAme1.mat Grus americana whooping crane (maternal hap 2023 refseq) 9117 SAMN32775697 haploid (maternal haplotype of diploid) Chromosome 24 Feb 2023 Vertebrate Genomes Project 1,257,837,975 11.73 primary birds 709 GCF_028858725.1 GCF_028858725.1_bColStr4.1.hap1 Colius striatus speckled mousebird (hap1 2023 refseq) 57412 SAMN33339572 haploid Chromosome 24 Feb 2023 Vertebrate Genomes Project 1,212,482,152 23.44 primary birds 710 GCF_028858775.2 GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri Pan troglodytes chimpanzee (v2 AG18354 primary hap 2024 refseq) 9598 SAMN30216104 haploid (principal pseudohaplotype of diploid) Complete Genome 08 Jan 2024 National Human Genome Research Institute, National Institutes of Health 3,177,756,316 49.97 primary primates 711 GCF_028878055.3 GCF_028878055.3_NHGRI_mSymSyn1-v2.1_pri Symphalangus syndactylus siamang (v2.1 Jambi primary hap 2024 refseq) 9590 SAMN30216103 haploid Complete Genome 05 Jan 2024 National Human Genome Research Institute, National Institutes of Health 3,262,904,224 55.90 primary primates 712 GCF_028885625.2 GCF_028885625.2_NHGRI_mPonPyg2-v2.0_pri Pongo pygmaeus Bornean orangutan (v2 AG05252 primary hap 2024 refseq) 9600 SAMN10521809 haploid (principal pseudohaplotype of diploid) Complete Genome 08 Jan 2024 National Human Genome Research Institute, National Institutes of Health 3,220,951,552 54.51 primary primates 713 GCF_028885655.2 GCF_028885655.2_NHGRI_mPonAbe1-v2.0_pri Pongo abelii Sumatran orangutan (v2 AG06213 primary hap 2024 refseq) 9601 SAMN10521808 haploid (principal pseudohaplotype of diploid) Chromosome 05 Jan 2024 National Human Genome Research Institute, National Institutes of Health 3,259,870,029 54.90 primary primates 714 GCF_029281585.2 GCF_029281585.2_NHGRI_mGorGor1-v2.1_pri Gorilla gorilla gorilla western lowland gorilla (v2.1 KB3781 2024 refseq) 9595 SAMN04003007 haploid Chromosome 08 Jan 2024 National Human Genome Research Institute, National Institutes of Health 3,545,850,636 50.91 primary primates 715 GCF_029289425.2 GCF_029289425.2_NHGRI_mPanPan1-v2.0_pri Pan paniscus pygmy chimpanzee (v2 primary hap 2024 refseq) 9597 SAMN13935689 haploid Chromosome 08 Jan 2024 National Human Genome Research Institute, National Institutes of Health 3,244,905,271 50.67 primary primates 716 GCF_029499605.1 GCF_029499605.1_aHylSar1.hap1 Hyla sarda Sardinian treefrog (hap1 2023 refseq) 327740 SAMN32629340 haploid Chromosome 07 Apr 2023 Vertebrate Genomes Project 4,142,159,359 71.09 primary amphibians 717 GCF_029582105.1 GCF_029582105.1_OMel1.0 Oenanthe melanoleuca Eastern black-eared wheatear (GR-GAL-2019-014 2023) 2939378 SAMN33408179 haploid Chromosome 06 Apr 2023 Swiss Ornithological Institute 1,036,256,795 20.82 primary birds 718 GCF_029633855.1 GCF_029633855.1_fHopMal1.hap1 Hoplias malabaricus trahira (v1 hap1 2024 refseq) 27720 SAMN32740525 haploid Chromosome 25 Jun 2024 Vertebrate Genomes Project 1,186,371,479 37.57 primary fish 719 GCF_029633865.1 GCF_029633865.1_fLamInc1.hap2 Lampris incognitus smalleye Pacific opah (hap2 2023 refseq) 2546036 SAMN34060140 haploid Chromosome 13 Apr 2023 Vertebrate Genomes Project 1,482,357,630 53.30 primary fish 720 GCF_029931775.1 GCF_029931775.1_rEulEur1.hap1 Euleptes europaea European leaf-toed gecko (hap1 2023) 460621 SAMN32622440 haploid Chromosome 15 May 2023 Vertebrate Genomes Project 1,781,916,107 49.31 primary reptiles 721 GCF_030014295.1 GCF_030014295.1_mLoxAfr1.hap2 Loxodonta africana African savanna elephant (hap2 2023 refseq) 9785 SAMN32756554 haploid Chromosome 16 May 2023 Vertebrate Genomes Project 3,540,876,381 49.48 primary mammals 722 GCF_030014385.1 GCF_030014385.1_fTriRos1.hap1 Trichomycterus rosablanca Andian cavefish (hap1 2023 refseq) 2290929 SAMN32755940 haploid Chromosome 16 May 2023 Vertebrate Genomes Project 1,045,025,885 49.04 primary fish 723 GCF_030020395.1 GCF_030020395.1_mManPen7.hap1 Manis pentadactyla Chinese pangolin (hap1 2023) 143292 SAMN32757332 haploid Chromosome 23 May 2023 Vertebrate Genomes Project 2,840,164,579 40.49 primary mammals 724 GCF_030028045.1 GCF_030028045.1_mHipAmp2.hap2 Hippopotamus amphibius kiboko hippopotamus (v2 hap2 2023 refseq) 575201 SAMN33342074 haploid Chromosome 18 May 2023 Vertebrate Genomes Project 2,538,259,262 37.38 primary mammals 725 GCF_030028105.1 GCF_030028105.1_sMobBir1.hap1 Mobula birostris giant manta (hap1 2023 refseq) 1983395 SAMN32746370 haploid (haplotype 1) Chromosome 22 May 2023 Vertebrate Genomes Project 4,014,635,230 54.43 primary sharks 726 GCF_030035675.1 GCF_030035675.1_rRhiFlo1.hap2 Rhineura floridana Florida worm lizard (hap2 2023 refseq) 261503 SAMN34105704 haploid Chromosome 22 May 2023 Vertebrate Genomes Project 2,307,419,594 45.32 primary reptiles 727 GCF_030144855.1 GCF_030144855.1_sHypSab1.hap1 Hypanus sabinus Atlantic stingray (hap1 2023 refseq) 79690 SAMN32745077 haploid Chromosome 05 Jun 2023 Vertebrate Genomes Project 4,044,869,043 61.77 primary sharks 728 GCF_030435755.1 GCF_030435755.1_mOchPri1.hap1 Ochotona princeps American pika (hap1 2023) 9978 SAMN35822658 haploid Chromosome 13 Jul 2023 Vertebrate Genomes Project 2,555,444,530 43.65 primary mammals 729 GCF_030435805.1 GCF_030435805.1_mMusLut2.pri Mustela lutreola European mink (primary hap 2023 refseq) 9666 SAMN35784236 haploid (principal pseudohaplotype of diploid) Chromosome 13 Jul 2023 Vertebrate Genomes Project 2,586,268,927 37.06 primary mammals 730 GCF_030445035.2 GCF_030445035.2_mDasNov1.1.hap2 Dasypus novemcinctus nine-banded armadillo (v2 hap2 2023) 9361 SAMN32738980 haploid (haplotype 2) Chromosome 13 Jul 2023 Vertebrate Genomes Project 3,610,551,914 53.17 primary mammals 731 GCF_030463535.1 GCF_030463535.1_fSalBra1.hap2 Salminus brasiliensis dorado (hap2 2023 refseq) 930266 SAMN35075251 haploid (haplotype 2) Chromosome 14 Jul 2023 Vertebrate Genomes Project 1,066,483,687 36.78 primary fish 732 GCF_030490865.1 GCF_030490865.1_bPoeAtr1.hap1 Poecile atricapillus black-capped chickadee (hap1 2023) 48891 SAMN35074507 haploid Chromosome 18 Jul 2023 Vertebrate Genomes Project 1,251,133,642 15.80 primary birds 733 GCF_030684315.1 GCF_030684315.1_sSteTig4.hap1 Stegostoma tigrinum zebra shark (hap1 2023 refseq) 3053191 SAMN35823397 haploid Chromosome 08 Aug 2023 Vertebrate Genomes Project 3,198,515,386 64.64 primary sharks 734 GCF_030867095.1 GCF_030867095.1_rAllMis1 Alligator mississippiensis American alligator (2023 refseq) 8496 SAMN37045233 haploid Chromosome 24 Aug 2023 Vertebrate Genomes Project 2,346,795,873 42.90 primary reptiles 735 GCF_030936135.1 GCF_030936135.1_bGavSte3.hap2 Gavia stellata red-throated loon (hap2 2023 refseq) 37040 SAMN37096312 haploid Chromosome 30 Aug 2023 Vertebrate Genomes Project 1,321,270,170 14.85 primary birds 736 GCF_031021105.1 GCF_031021105.1_rEryReg1.hap1 Erythrolamprus reginae royal ground snake (hap1 2023 refseq) 121349 SAMN32631248 haploid (haplotype 1) Chromosome 31 Aug 2023 Vertebrate Genomes Project 1,964,049,041 59.53 primary reptiles 737 GCF_032444005.1 GCF_032444005.1_aRanImi1.pri Ranitomeya imitator mimic poison frog (primary hap 2023 refseq) 111125 SAMN32907850 haploid (principal pseudohaplotype of diploid) Chromosome 16 Oct 2023 Vertebrate Genomes Project 5,956,610,564 76.48 primary amphibians 738 GCF_035084215.1 GCF_035084215.1_sHepPer1.hap1 Heptranchias perlo sharpnose sevengill shark (hap1 2024 genbank) 212740 SAMN38891902 haploid (haplotype 1) Chromosome 05 Jan 2024 Vertebrate Genomes Project 3,249,915,908 62.33 primary sharks 739 GCF_035149785.1 GCF_035149785.1_rCanAsp1.hap2 Candoia aspera Papuan ground boa (hap2 2024 refseq) 51853 SAMN37159891 haploid Chromosome 18 Jan 2024 Vertebrate Genomes Project 1,530,810,380 33.56 primary reptiles 740 GCF_035609145.1 GCF_035609145.1_aEleCoq1.hap1 Eleutherodactylus coqui Puerto Rican coqui (hap1 2024 refseq) 57060 SAMN39150572 haploid (haplotype 1) Chromosome 12 Jan 2024 Vertebrate Genomes Project 3,371,297,528 54.01 primary amphibians 741 GCF_035770615.1 GCF_035770615.1_bMelMel2.pri Melospiza melodia melodia song sparrow (primary hap 2024 refseq) 1914991 SAMN35847297 haploid (principal pseudohaplotype of diploid) Chromosome 24 Jan 2024 Vertebrate Genomes Project 1,541,245,192 39.28 primary birds 742 GCF_036013445.1 GCF_036013445.1_bCalNic1.hap1 Caloenas nicobarica Nicobar pigeon (hap1 2024 refseq) 187106 SAMN39256628 haploid (haplotype 1) Chromosome 26 Jan 2024 Vertebrate Genomes Project 1,285,834,579 19.62 primary birds 743 GCF_036013475.1 GCF_036013475.1_bColLiv1.pat.W.v2 Columba livia rock pigeon (v2 racing homer 2024 refseq) 8932 SAMN38891892 haploid (paternal haplotype of diploid) Chromosome 08 Apr 2024 Vertebrate Genomes Project 1,325,566,026 20.36 primary birds 744 GCF_036169615.1 GCF_036169615.1_bHelExo1.hap1 Heliangelus exortis tourmaline sunangel (hap1 2024 refseq) 472823 SAMN37253778 haploid (haplotype 1) Chromosome 26 Jan 2024 Vertebrate Genomes Project 1,049,650,714 21.23 primary birds 745 GCF_036172605.1 GCF_036172605.1_aPelFus1.pri Pelobates fuscus common spadefoot toad (primary hap 2024 refseq) 191477 SAMN39244120 haploid Chromosome 26 Jan 2024 Vertebrate Genomes Project 3,606,456,729 51.45 primary amphibians 746 GCF_036250125.1 GCF_036250125.1_bDixPip1.hap1 Pseudopipra pipra white-crowned manakin (hap1 2024 refseq) 415032 SAMN32739894 haploid Chromosome 31 Jan 2024 Vertebrate Genomes Project 1,165,201,947 21.92 primary birds 747 GCF_036321535.1 GCF_036321535.1_mCamDro1.pat Camelus dromedarius Arabian camel (paternal hap 2024 refseq) 9838 SAMN39296380 haploid (paternal haplotype of diploid) Chromosome 31 Jan 2024 Vertebrate Genomes Project 2,306,603,094 33.51 primary mammals 748 GCF_036365525.1 GCF_036365525.1_sHetFra1.hap1 Heterodontus francisci horn shark (sHetFra1hap1 2024) 7792 SAMN39432692 haploid (haplotype 1) Chromosome 06 Feb 2024 Vertebrate Genomes Project 6,013,048,672 68.67 primary sharks 749 GCF_036370855.1 GCF_036370855.1_bDroNov1.hap1 Dromaius novaehollandiae emu (hap1 2024) 8790 SAMN39262816 haploid Chromosome 26 Feb 2024 Vertebrate Genomes Project 1,468,706,110 24.07 primary birds 750 GCF_036373705.1 GCF_036373705.1_fAmiCal2.hap1 Amia calva bowfin (hap1 2024 refseq) 7924 SAMN39643085 haploid (haplotype 1) Chromosome 06 Feb 2024 Vertebrate Genomes Project 989,103,751 37.37 primary fish 751 GCF_036417665.1 GCF_036417665.1_bPasDom1.hap1 Passer domesticus house sparrow (hap1 2024 refseq) 48849 SAMN39255856 haploid Chromosome 07 Feb 2024 Vertebrate Genomes Project 1,310,131,054 26.39 primary birds 752 GCF_036417845.1 GCF_036417845.1_bAptMan1.hap1 Apteryx mantelli North Island brown kiwi (hap1 2024 refseq) 2696672 SAMN39257886 haploid (haplotype 1) Chromosome 06 Feb 2024 Vertebrate Genomes Project 1,504,396,159 21.93 primary birds 753 GCF_036850765.1 GCF_036850765.1_mSacBil1_pri_phased_curated Saccopteryx bilineata greater sac-winged bat (primary hap 2024 refseq) 59482 SAMN37288508 haploid (principal pseudohaplotype of diploid) Chromosome 26 Feb 2024 Bat1K 2,612,309,609 42.95 primary mammals 754 GCF_036850995.1 GCF_036850995.1_mSacLep1_pri_phased_curated Saccopteryx leptura lesser sac-winged bat (primary hap 2024 refseq) 249018 SAMN37390139 haploid (principal pseudohaplotype of diploid) Chromosome 26 Feb 2024 Bat1K 2,576,513,769 42.56 primary mammals 755 GCF_036971445.1 GCF_036971445.1_sNarBan1.hap1 Narcine bancroftii Caribbean electric ray (hap1 2024 refseq) 1343680 SAMN39325148 haploid (haplotype 1) Chromosome 06 Mar 2024 Vertebrate Genomes Project 3,328,432,768 54.80 primary sharks 756 GCF_037038585.1 GCF_037038585.1_bPatFas1.hap1 Patagioenas fasciata band-tailed pigeon (hap1 2025) 372321 SAMN40018840 haploid (haplotype 1) Chromosome 07 Feb 2025 Vertebrate Genomes Project 1,454,324,034 23.22 primary birds 757 GCF_037157495.1 GCF_037157495.1_bLatDis1.hap1 Lathamus discolor swift parrot (hap1 2024) 678569 SAMN40289871 haploid (haplotype 1) Chromosome 15 Mar 2024 Vertebrate Genomes Project 1,241,003,407 16.81 primary birds 758 GCF_037176765.1 GCF_037176765.1_rAnoSag1.mat Anolis sagrei Brown anole (maternal hap 2024 refseq) 38937 SAMN40144551 haploid (maternal haplotype of diploid) Chromosome 15 Mar 2024 Vertebrate Genomes Project 1,950,830,970 53.77 primary reptiles 759 GCF_037176945.1 GCF_037176945.1_fLatCha1.pri Latimeria chalumnae coelacanth (fLatCha1 primary hap 2024) 7897 SAMN39710040 haploid (principal pseudohaplotype of diploid) Chromosome 18 Mar 2024 Vertebrate Genomes Project 2,947,609,019 54.45 primary fish 760 GCF_037993035.1 GCF_037993035.1_T2T-MFA8v1.0 Macaca fascicularis crab-eating macaque (582-1 2024) 9541 SAMN38317298 haploid Complete Genome 05 Apr 2024 Shanghai Jiao Tong University 3,042,914,375 52.97 primary primates 761 GCF_039877785.1 GCF_039877785.1_fChaTrf1.hap1 Chaetodon trifascialis chevron butterflyfish (hap1 2024 refseq) 109706 SAMN41253346 haploid (haplotype 1) Chromosome 29 May 2024 Vertebrate Genomes Project 662,489,023 24.65 primary fish 762 GCF_039906515.1 GCF_039906515.1_mPseCra1.hap1 Pseudorca crassidens false killer whale (hap1 2024 refseq) 82174 SAMN41253811 haploid (haplotype 1) Chromosome 31 May 2024 Vertebrate Genomes Project 2,674,592,094 41.51 primary mammals 763 GCF_040182565.1 GCF_040182565.1_Taihu_goose_T2T_genome Anser cygnoides Swan (goose HZ-2024a 2024) 8845 SAMN41386743 haploid Chromosome 14 Jun 2024 Jiangsu Agri-animal Husbandry Vocational College 1,215,354,515 24.67 primary birds 764 GCF_040807025.1 GCF_040807025.1_bStrCam1.hap1 Struthio camelus African ostrich (bStrCam1hap1 2024) 8801 SAMN42123890 haploid (haplotype 1) Chromosome 22 Jul 2024 Vertebrate Genomes Project 1,452,018,929 14.40 primary birds 765 GCF_040869285.1 GCF_040869285.1_UKY_Mglu_1.0 Myxine glutinosa Atlantic hagfish (MG_SS 2024) 7769 SAMN41069696 haploid Chromosome 30 Jul 2024 University of Kentucky 3,829,277,745 75.19 secondary otherChordates 766 GCF_040894005.1 GCF_040894005.1_aEngPut4.maternal Engystomops pustulosus Tungara frog (aEngPut4 maternal hap 2024 refseq) 76066 SAMN42463661 haploid (maternal haplotype of diploid) Chromosome 30 Jul 2024 Vertebrate Genomes Project 2,158,203,323 52.56 primary amphibians 767 GCF_040937935.1 GCF_040937935.1_aHypRig1.pri Hyperolius riggenbachi Riggenbach's reed frog (aHypRig1 primary hap 2024) 752182 SAMN42123895 haploid (principal pseudohaplotype of diploid) Chromosome 30 Jul 2024 Vertebrate Genomes Project 4,915,935,452 70.38 primary amphibians 768 GCF_040938575.1 GCF_040938575.1_UKY_AmexF1_1 Ambystoma mexicanum axolotl (Mex_15411 2024) 8296 SAMN43142723 haploid Chromosome 30 Jul 2024 University of Kentucky 29,117,864,639 67.13 primary amphibians 769 GCF_040954835.1 GCF_040954835.1_fLepOcu1.hap2 Lepisosteus oculatus spotted gar (fLepOcu1hap2 2024) 7918 SAMN41155427 haploid (haplotype 2) Chromosome 01 Aug 2024 Vertebrate Genomes Project 1,200,589,847 39.20 primary fish 770 GCF_042242105.1 GCF_042242105.1_fPemKlu1.hap1 Pempheris klunzingeri rouch bullseye (RE-2024b hap1 2024 refseq) 3127111 SAMN40589649 haploid (haplotype 1) Chromosome 25 Sep 2024 (n/a) 646,252,061 24.57 primary fish 771 GCF_042477335.2 GCF_042477335.2_ARS-UI_OviCan_v2 Ovis canadensis bighorn sheep (v2 Bighorn MfBH-ARS-UI-01 2024) 37174 (n/a) haploid Chromosome 18 Oct 2024 Sheep Pangenome 2,974,283,533 46.87 primary mammals 772 GCF_043159975.1 GCF_043159975.1_mMacNem.hap1 Macaca nemestrina pig-tailed macaque (mMacNem1hap1 2024 refseq) 9545 SAMN41827875 haploid (haplotype 1) Chromosome 15 Oct 2024 Vertebrate Genomes Project 3,116,288,670 53.59 primary mammals 773 GCF_043641665.1 GCF_043641665.1_fEnoArm2.hap1 Enoplosus armatus old wife E.armatus (hap1 2024) 215367 SAMN40589647 haploid (haplotype 1) Chromosome 30 Oct 2024 Ocean Genomes 579,897,767 23.12 primary fish 774 GCF_044704955.1 GCF_044704955.1_sPriJap1.hap1 Pristiophorus japonicus Japanese sawshark (hap1 2024 refseq) 55135 SAMN44116980 haploid (haplotype 1) Chromosome 13 Nov 2024 Vertebrate Genomes Project 5,923,069,295 71.47 primary sharks 775 GCF_047511675.1 GCF_047511675.1_mMarFla1.hap1 Marmota flaviventris yellow-bellied marmot (hap1 2025 refseq) 93162 SAMN45932315 haploid (haplotype 1) Chromosome 10 Feb 2025 Vertebrate Genomes Project 2,704,651,887 34.99 primary mammals 776 GCF_048164855.1 GCF_048164855.1_mCanLup2.hap1 Canis lupus baileyi Mexican gray wolf (hap1 2025 refseq) 143281 SAMN46796784 haploid (haplotype 1) Chromosome 27 Feb 2025 Vertebrate Genomes Project 2,495,589,887 35.20 primary mammals 777 GCF_900324465.2 GCF_900324465.2_fAnaTes1.2 Anabas testudineus climbing perch (v1.2 2018 refseq) 64144 SAMEA104026376 haploid (principal pseudohaplotype of diploid) Chromosome 19 Dec 2018 SC 555,658,001 21.33 primary fish 778 GCF_900324485.2 GCF_900324485.2_fMasArm1.2 Mastacembelus armatus zig-zag eel (v1.2 2019 refseq) 205130 SAMEA104026378 haploid (principal pseudohaplotype of diploid) Chromosome 16 Mar 2019 SC 591,951,587 20.76 primary fish 779 GCF_900496995.4 GCF_900496995.4_bAquChr1.4 Aquila chrysaetos chrysaetos golden eagle (v1.4 2021) 223781 SAMEA994725 haploid (principal pseudohaplotype of diploid) Chromosome 26 Mar 2021 Wellcome Sanger Institute 1,233,704,830 8.95 primary birds 780 GCF_900634415.1 GCF_900634415.1_fCotGob3.1 Cottoperca gobio channel bull blenny (2019 refseq) 56716 SAMEA104242975 haploid Chromosome 06 Feb 2019 SC 609,391,784 26.02 primary fish 781 GCF_900634625.1 GCF_900634625.1_fParRan2.1 Parambassis ranga Indian glassy fish (v1 2019) 210632 SAMEA4675621 haploid Chromosome 06 Feb 2019 SC 551,012,959 22.27 primary fish 782 GCF_900634775.1 GCF_900634775.1_fGouWil2.1 Gouania willdenowi blunt-snouted clingfish (v1 2019 refseq) 441366 SAMEA104026382 haploid (principal pseudohaplotype of diploid) Chromosome 06 Feb 2019 SC 937,150,793 51.94 primary fish 783 GCF_900634795.4 GCF_900634795.4_fBetSpl5.4 Betta splendens Siamese fighting fish (v4 primary hap 2023) 158456 SAMEA104381735 haploid (principal pseudohaplotype of diploid) Chromosome 10 Mar 2023 Wellcome Sanger Institute 427,001,245 23.21 primary fish 784 GCF_900700375.1 GCF_900700375.1_fDenClu1.1 Denticeps clupeoides denticle herring (v1 2019) 299321 SAMEA104129917 haploid Chromosome 16 Mar 2019 SC 567,401,054 28.46 primary fish 785 GCF_900747795.2 GCF_900747795.2_fErpCal1.3 Erpetoichthys calabaricus reedfish (2021) 27687 SAMEA104026374 haploid (principal pseudohaplotype of diploid) Chromosome 07 Jul 2021 Wellcome Sanger Institute 3,613,551,144 59.63 primary fish 786 GCF_900880675.1 GCF_900880675.1_fSpaAur1.1 Sparus aurata gilthead seabream (v1 2019) 8175 SAMEA104384835 haploid (principal pseudohaplotype of diploid) Chromosome 30 Jul 2019 SC 833,595,063 31.86 primary fish 787 GCF_900963305.1 GCF_900963305.1_fEcheNa1.1 Echeneis naucrates live sharksucker (v1 2019) 173247 SAMEA4966390 haploid (principal pseudohaplotype of diploid) Chromosome 11 Apr 2019 SC 544,229,245 15.10 primary fish 788 GCF_900964775.1 GCF_900964775.1_fSclFor1.1 Scleropages formosus Asian bonytongue (2019) 113540 SAMEA4872123 haploid (principal pseudohaplotype of diploid) Chromosome 11 Apr 2019 SC 784,563,014 27.43 primary fish 789 GCF_901000725.2 GCF_901000725.2_fTakRub1.2 Takifugu rubripes torafugu (fTakRub1.2 2019 refseq) 31033 SAMEA104384834 haploid (principal pseudohaplotype of diploid) Chromosome 05 Jun 2019 SC 384,126,662 16.51 primary fish 790 GCF_901001135.1 GCF_901001135.1_aRhiBiv1.1 Rhinatrema bivittatum two-lined caecilian (v1.1 2019 refseq) 194408 SAMEA104387956 haploid (principal pseudohaplotype of diploid) Chromosome 02 Jun 2019 SC 5,319,239,201 66.86 primary amphibians 791 GCF_901709675.1 GCF_901709675.1_fSynAcu1.2 Syngnathus acus greater pipefish (v1.2 2020 refseq) 161584 SAMEA104381750 haploid Chromosome 31 Jul 2020 SC 324,331,233 25.04 primary fish 792 GCF_902148845.1 GCF_902148845.1_fSalaFa1.1 Salarias fasciatus jewelled blenny (2019) 181472 SAMEA4966329 haploid (principal pseudohaplotype of diploid) Chromosome 03 Jul 2019 SC 797,507,141 27.86 primary fish 793 GCF_902148855.1 GCF_902148855.1_fSphaOr1.1 Sphaeramia orbicularis orbiculate cardinalfish (2019) 375764 SAMEA4966328 haploid Chromosome 03 Jul 2019 SC 1,342,662,642 52.92 primary fish 794 GCF_902150065.1 GCF_902150065.1_fMyrMur1.1 Myripristis murdjan pinecone soldierfish (2019) 586833 SAMEA4872133 haploid Chromosome 03 Jul 2019 SC 835,254,674 32.39 primary fish 795 GCF_902167405.1 GCF_902167405.1_gadMor3.0 Gadus morhua Atlantic cod (2019) 8049 SAMEA5574046 haploid (principal pseudohaplotype of diploid) Chromosome 16 Jul 2019 SC 669,966,409 36.97 primary fish 796 GCF_902362185.1 GCF_902362185.1_fChaCha1.1 Chanos chanos milkfish (2019) 29144 SAMEA5159473 haploid (principal pseudohaplotype of diploid) Chromosome 14 Aug 2019 SC 656,929,047 20.58 primary fish 797 GCF_902459465.1 GCF_902459465.1_eAstRub1.3 Asterias rubens European starfish (2020) 7604 SAMEA994741 haploid Chromosome 12 Feb 2020 SC 417,601,740 45.16 primary echinoderm 798 GCF_902459505.1 GCF_902459505.1_aGeoSer1.1 Geotrypetes seraphini Gaboon caecilian (v1.1 2019 refseq) 260995 SAMEA104387963 haploid (principal pseudohaplotype of diploid) Chromosome 18 Aug 2019 SC 3,779,430,019 71.40 primary amphibians 799 GCF_902500255.1 GCF_902500255.1_fThaAma1.1 Thalassophryne amazonica prehistoric monster fish (2019 refseq) 390379 SAMEA104129913 haploid (principal pseudohaplotype of diploid) Chromosome 30 Sep 2019 SC 2,446,592,878 72.03 primary fish 800 GCF_902655055.1 GCF_902655055.1_mLutLut1.2 Lutra lutra Eurasian river otter (2020) 9657 SAMEA994731 haploid Chromosome 31 Jul 2020 SC 2,438,458,878 34.39 primary mammals 801 GCF_902686445.1 GCF_902686445.1_mSciCar1.2 Sciurus carolinensis gray squirrel (2020) 30640 SAMEA994726 haploid Chromosome 31 Jul 2020 SC 2,815,397,268 36.31 primary mammals 802 GCF_902713425.1 GCF_902713425.1_fAciRut3.2_maternal_haplotype Acipenser ruthenus sterlet (maternal hap 2022 refseq) 7906 SAMEA5572864 haploid Chromosome 02 Feb 2022 Wellcome Sanger Institute 1,899,810,788 45.25 primary fish 803 GCF_902713615.1 GCF_902713615.1_sScyCan1.1 Scyliorhinus canicula smaller spotted catshark (v1.1 primary hap 2020 refseq) 7830 SAMEA994730 haploid Chromosome 17 Dec 2020 SC 4,220,406,627 68.76 primary sharks 804 GCF_903992535.2 GCF_903992535.2_mArvAmp1.2 Arvicola amphibius Eurasian water vole (v2 2021) 1047088 SAMEA994740 haploid Chromosome 15 May 2021 Wellcome Sanger Institute 2,297,766,297 34.76 primary mammals 805 GCF_903995425.1 GCF_903995425.1_mOncTor1.1 Onychomys torridus southern grasshopper mouse (2020) 38674 SAMEA104026389 haploid Chromosome 21 Aug 2020 SC 2,468,394,440 36.22 primary mammals 806 GCF_903995435.1 GCF_903995435.1_mAcoRus1.1 Acomys russatus golden spiny mouse (2020) 60746 SAMEA104026431 haploid Chromosome 21 Aug 2020 SC 2,301,522,284 33.83 primary mammals 807 GCF_904848185.1 GCF_904848185.1_fAcaLat1.1 Acanthopagrus latus yellowfin seabream (v.2019 primary hap 2020) 8177 SAMN16236878 haploid Chromosome 12 Oct 2020 SC 685,144,197 23.16 primary fish 808 GCF_905171765.1 GCF_905171765.1_aBufBuf1.1 Bufo bufo common toad (primary hap 2021) 8384 SAMEA7521636 haploid Chromosome 28 Jan 2021 Wellcome Sanger Institute 5,044,744,194 76.82 primary amphibians 809 GCF_905171775.1 GCF_905171775.1_aRanTem1.1 Rana temporaria European common frog (2021) 8407 SAMEA7521635 haploid (principal pseudohaplotype of diploid) Chromosome 28 Jan 2021 Wellcome Sanger Institute 4,111,422,596 68.59 primary amphibians 810 GCF_910594005.1 GCF_910594005.1_mCerEla1.1 Cervus elaphus red deer (2021) 9860 SAMEA7523520 haploid (principal pseudohaplotype of diploid) Chromosome 07 Jul 2021 WELLCOME SANGER INSTITUTE 2,886,603,524 44.67 primary mammals 811 GCF_910596095.1 GCF_910596095.1_fThuMac1.1 Thunnus maccoyii southern bluefin tuna (primary hap 2021 refseq) 8240 SAMEA8654747 haploid (principal pseudohaplotype of diploid) Chromosome 07 Jul 2021 Wellcome Sanger Institute 782,423,979 29.63 primary fish 812 GCF_914725855.1 GCF_914725855.1_fThuAlb1.1 Thunnus albacares yellowfin tuna (primary hap 2021) 8236 SAMEA8654749 haploid (principal pseudohaplotype of diploid) Chromosome 16 Sep 2021 WELLCOME SANGER INSTITUTE 792,101,331 30.47 primary fish 813 GCF_922984935.1 GCF_922984935.1_mMelMel3.1_paternal_haplotype Meles meles Eurasian badger (v3.1 2021) 9662 SAMEA7524400 haploid Chromosome 19 Dec 2021 WELLCOME SANGER INSTITUTE 2,738,694,446 38.15 primary mammals 814 GCF_929443795.1 GCF_929443795.1_bAccGen1.1 Astur gentilis northern goshawk (v1 primary hap 2022 refseq) 8957 SAMEA8235650 haploid (principal pseudohaplotype of diploid) Chromosome 09 Feb 2022 WELLCOME SANGER INSTITUTE 1,398,011,397 18.04 primary birds 815 GCF_937001465.1 GCF_937001465.1_mOrcOrc1.1 Orcinus orca killer whale (2022) 9733 SAMEA8800229 haploid (principal pseudohaplotype of diploid) Chromosome 03 May 2022 WELLCOME SANGER INSTITUTE 2,647,351,467 42.14 primary mammals 816 GCF_947179515.1 GCF_947179515.1_mApoSyl1.1 Apodemus sylvaticus European woodmouse (2022 refseq) 10129 SAMEA7702024 haploid (principal pseudohaplotype of diploid) Chromosome 28 Oct 2022 WELLCOME SANGER INSTITUTE 2,889,785,202 44.86 primary mammals 817 GCF_947347685.1 GCF_947347685.1_fPlePla1.1 Pleuronectes platessa European plaice (primary hap 2022 refseq) 8262 SAMEA13853390 haploid (principal pseudohaplotype of diploid) Chromosome 29 Nov 2022 WELLCOME SANGER INSTITUTE 687,388,084 32.65 primary fish 818 GCF_947461875.1 GCF_947461875.1_bHalAlb1.1 Haliaeetus albicilla white-tailed eagle (primary hap 2022 refseq) 8969 SAMEA12857288 haploid (principal pseudohaplotype of diploid) Chromosome 06 Dec 2022 WELLCOME SANGER INSTITUTE 1,320,315,924 23.68 primary birds 819 GCF_949316205.1 GCF_949316205.1_fPlaFle2.1 Platichthys flesus European flounder (primary hap 2023 refseq) 8260 SAMEA110026475 haploid (principal pseudohaplotype of diploid) Chromosome 05 Apr 2023 WELLCOME SANGER INSTITUTE 597,120,941 27.16 primary fish 820 GCF_949316345.1 GCF_949316345.1_fPunPun2.1 Pungitius pungitius ninespine stickleback (primary hap 2023 refseq) 134920 SAMEA11296545 haploid (principal pseudohaplotype of diploid) Chromosome 08 Apr 2023 WELLCOME SANGER INSTITUTE 480,434,100 28.40 primary fish 821 GCF_949774975.1 GCF_949774975.1_mLagAlb1.1 Lagenorhynchus albirostris white-beaked dolphin (primary hap 2023 refseq) 27610 SAMEA111380537 haploid (principal pseudohaplotype of diploid) Chromosome 08 Apr 2023 WELLCOME SANGER INSTITUTE 2,544,835,795 40.53 primary mammals 822 GCF_949987515.2 GCF_949987515.2_mDelDel1.2 Delphinus delphis saddleback dolphin (v2 primary hap 2024 refseq) 9728 SAMEA111380534 haploid (principal pseudohaplotype of diploid) Chromosome 07 Sep 2024 WELLCOME SANGER INSTITUTE 2,663,516,986 42.65 primary mammals 823 GCF_949987535.1 GCF_949987535.1_mBalAcu1.1 Balaenoptera acutorostrata minke whale (primary hap 2023 refseq) 9767 SAMEA111380540 haploid (principal pseudohaplotype of diploid) Chromosome 01 May 2023 WELLCOME SANGER INSTITUTE 2,772,885,358 44.23 primary mammals 824 GCF_950005125.1 GCF_950005125.1_mChiNiv1.1 Chionomys nivalis European snow vole (primary hap 2023 refseq) 269649 SAMEA13217622 haploid (principal pseudohaplotype of diploid) Chromosome 01 May 2023 WELLCOME SANGER INSTITUTE 2,393,390,621 44.15 primary mammals 825 GCF_950295315.1 GCF_950295315.1_mEriEur2.1 Erinaceus europaeus western European hedgehog (primary hap 2023 refseq) 9365 SAMEA13207416 haploid (principal pseudohaplotype of diploid) Chromosome 01 May 2023 WELLCOME SANGER INSTITUTE 2,720,683,831 55.37 primary mammals 826 GCF_958295425.1 GCF_958295425.1_fSolSol10.1 Solea solea common sole (primary hap 2023 refseq) 90069 SAMEA10984647 haploid (principal pseudohaplotype of diploid) Chromosome 06 Jul 2023 WELLCOME SANGER INSTITUTE 643,757,955 30.92 primary fish 827 GCF_963082965.1 GCF_963082965.1_fCarCar2.1 Carassius carassius crucian carp (primary hap 2023 refseq) 217509 SAMEA11296534 haploid (principal pseudohaplotype of diploid) Chromosome 09 Aug 2023 WELLCOME SANGER INSTITUTE 1,684,296,438 48.16 primary fish 828 GCF_963259705.1 GCF_963259705.1_mMyoDau2.1 Myotis daubentonii Daubenton's bat (primary hap 2023 refseq) 98922 SAMEA9921455 haploid (principal pseudohaplotype of diploid) Chromosome 20 Aug 2023 WELLCOME SANGER INSTITUTE 2,127,807,131 36.53 primary mammals 829 GCF_963455315.2 GCF_963455315.2_mGloMel1.2 Globicephala melas long-finned pilot whale (v2 primary hap 2024 refseq) 9731 SAMEA111380538 haploid (principal pseudohaplotype of diploid) Chromosome 07 Sep 2024 WELLCOME SANGER INSTITUTE 2,651,276,051 42.02 primary mammals 830 GCF_963506605.1 GCF_963506605.1_rZooViv1.1 Zootoca vivipara common lizard Z.vivipara (primary hap 2023) 8524 SAMEA111528662 haploid (principal pseudohaplotype of diploid) Chromosome 20 Sep 2023 WELLCOME SANGER INSTITUTE 1,440,239,386 45.64 primary reptiles 831 GCF_963514075.1 GCF_963514075.1_fConCon1.1 Conger conger European conger (primary hap 2023 refseq) 82655 SAMEA12219431 haploid (principal pseudohaplotype of diploid) Chromosome 29 Sep 2023 WELLCOME SANGER INSTITUTE 1,136,402,888 36.74 primary fish 832 GCF_963576545.1 GCF_963576545.1_fLimLim1.1 Limanda limanda common dab (primary hap 2023) 27771 SAMEA112765706 haploid (principal pseudohaplotype of diploid) Chromosome 03 Nov 2023 WELLCOME SANGER INSTITUTE 717,580,706 35.04 primary fish 833 GCF_963584025.1 GCF_963584025.1_fLabMix1.1 Labrus mixtus cuckoo wrasse (primary hap 2023) 508554 SAMEA111562155 haploid (principal pseudohaplotype of diploid) Chromosome 05 Nov 2023 WELLCOME SANGER INSTITUTE 740,563,171 33.86 primary fish 834 GCF_963662255.1 GCF_963662255.1_bCinCin1.1 Cinclus cinclus white-throated dipper (primary hap 2023 refseq) 127875 SAMEA9679959 haploid (principal pseudohaplotype of diploid) Chromosome 11 Dec 2023 WELLCOME SANGER INSTITUTE 1,170,837,027 26.63 primary birds 835 GCF_963691925.1 GCF_963691925.1_fScoSco1.1 Scomber scombrus Atlantic mackerel (primary hap 2023 refseq) 13677 SAMEA110450232 haploid (principal pseudohaplotype of diploid) Chromosome 07 Dec 2023 WELLCOME SANGER INSTITUTE 764,141,294 29.96 primary fish 836 GCF_963692335.1 GCF_963692335.1_fOsmEpe2.1 Osmerus eperlanus European smelt (primary hap 2023 refseq) 29151 SAMEA14448128 haploid (principal pseudohaplotype of diploid) Chromosome 11 Dec 2023 WELLCOME SANGER INSTITUTE 508,721,272 35.92 primary fish 837 GCF_963854185.1 GCF_963854185.1_fSarPil1.1 Sardina pilchardus sardine (primary hap 2023 refseq) 27697 SAMEA111562172 haploid (principal pseudohaplotype of diploid) Chromosome 14 Dec 2023 WELLCOME SANGER INSTITUTE 869,396,467 37.59 primary fish 838 GCF_963921805.1 GCF_963921805.1_bPhaCar2.1 Phalacrocorax carbo great cormorant (primary hap 2024 refseq) 9209 SAMEA8228692 haploid (principal pseudohaplotype of diploid) Chromosome 09 Feb 2024 WELLCOME SANGER INSTITUTE 1,283,623,959 13.41 primary birds 839 GCF_963924245.1 GCF_963924245.1_bChrRid1.1 Chroicocephalus ridibundus black-headed gull (primary hap 2024 refseq) 1192867 SAMEA112468038 haploid (principal pseudohaplotype of diploid) Chromosome 20 Jan 2024 WELLCOME SANGER INSTITUTE 1,417,554,307 31.33 primary birds 840 GCF_963924675.1 GCF_963924675.1_mPhoPho1.1 Phocoena phocoena harbor porpoise (primary hap 2024 refseq) 9742 SAMEA111380536 haploid (principal pseudohaplotype of diploid) Chromosome 29 Jan 2024 WELLCOME SANGER INSTITUTE 2,512,713,112 39.88 primary mammals 841 GCF_963924715.1 GCF_963924715.1_fThuThy2.1 Thunnus thynnus Atlantic bluefin tuna (primary hap 2024 refseq) 8237 SAMEA111406335 haploid (principal pseudohaplotype of diploid) Chromosome 29 Jan 2024 WELLCOME SANGER INSTITUTE 799,047,066 33.12 primary fish 842 GCF_963930625.1 GCF_963930625.1_mMunRee1.1 Muntiacus reevesi Reeves' muntjac (primary hap 2024) 9886 SAMEA110690972 haploid (principal pseudohaplotype of diploid) Chromosome 31 Jan 2024 WELLCOME SANGER INSTITUTE 2,656,168,540 41.12 primary mammals 843 GCF_963930695.1 GCF_963930695.1_fLabBer1.1 Labrus bergylta ballan wrasse (primary hap 2024 refseq) 56723 SAMEA111562158 haploid (principal pseudohaplotype of diploid) Chromosome 31 Jan 2024 WELLCOME SANGER INSTITUTE 720,210,020 30.38 primary fish 844 GCF_963932015.1 GCF_963932015.1_bAnaAcu1.1 Anas acuta northern pintail (primary hap 2024 refseq) 28680 SAMEA112468036 haploid (principal pseudohaplotype of diploid) Chromosome 07 Feb 2024 WELLCOME SANGER INSTITUTE 1,189,296,988 15.77 primary birds 845 GCF_964237555.1 GCF_964237555.1_mOryCun1.1 Oryctolagus cuniculus rabbit (primary hap 2024 refseq) 9986 SAMEA112468037 haploid (principal pseudohaplotype of diploid) Chromosome 31 Aug 2024 WELLCOME SANGER INSTITUTE 2,804,657,419 41.73 primary mammals