# Assembly name: bCalAnn1_v1.p # Organism name: Calypte anna (Anna's hummingbird) # Isolate: BGI_N300 # Sex: female # Taxid: 9244 # BioSample: SAMN02265252 # BioProject: PRJNA489139 # Submitter: Vertebrate Genomes Project # Date: 2019-05-17 # Assembly type: haploid # Release type: minor # Assembly level: Chromosome # Genome representation: full # WGS project: RRCD01 # Assembly method: FALCON v. 5.1.1; FALCON unzip v. 1.0.2; scaff10X v. git 4.28.2018; Bionano Solve DLS v. 3.2.1; Salsa2 HiC v. 2.0; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; purge_haplotigs v. bit 7.10.2018; gE # Expected final version: no # Genome coverage: 54.0x # Sequencing technology: PacBio RSII; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics HiC # GenBank assembly accession: GCA_003957555.2 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_003957585.1 Primary Assembly ## GCA_005459145.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Superscaffold_1 assembled-molecule 1 Chromosome CM012114.1 <> na Primary Assembly 197551010 na Superscaffold_2 assembled-molecule 2 Chromosome CM012115.1 <> na Primary Assembly 151342139 na Superscaffold_3 assembled-molecule 3 Chromosome CM012116.1 <> na Primary Assembly 114810999 na Superscaffold_4 assembled-molecule 4 Chromosome CM012117.1 <> na Primary Assembly 18597117 na Superscaffold_5 assembled-molecule 5 Chromosome CM012118.1 <> na Primary Assembly 16645885 na Superscaffold_6 assembled-molecule 6 Chromosome CM012119.1 <> na Primary Assembly 35401958 na Superscaffold_7 assembled-molecule 7 Chromosome CM012120.1 <> na Primary Assembly 39139214 na Superscaffold_8 assembled-molecule 8 Chromosome CM012121.1 <> na Primary Assembly 31090148 na Superscaffold_9 assembled-molecule 9 Chromosome CM012122.1 <> na Primary Assembly 25686456 na Superscaffold_10 assembled-molecule 10 Chromosome CM012123.1 <> na Primary Assembly 22664390 na Superscaffold_11 assembled-molecule 11 Chromosome CM012124.1 <> na Primary Assembly 20302349 na Superscaffold_12 assembled-molecule 12 Chromosome CM012125.1 <> na Primary Assembly 21352500 na Superscaffold_13 assembled-molecule 13 Chromosome CM012126.1 <> na Primary Assembly 17696115 na Superscaffold_14 assembled-molecule 14 Chromosome CM012127.1 <> na Primary Assembly 15497061 na Superscaffold_15 assembled-molecule 15 Chromosome CM012128.1 <> na Primary Assembly 13887164 na Superscaffold_17 assembled-molecule 17 Chromosome CM012129.1 <> na Primary Assembly 10473655 na Superscaffold_18 assembled-molecule 18 Chromosome CM012130.1 <> na Primary Assembly 11617720 na Superscaffold_19 assembled-molecule 19 Chromosome CM012131.1 <> na Primary Assembly 11166003 na Superscaffold_20 assembled-molecule 20 Chromosome CM012132.1 <> na Primary Assembly 15116875 na Superscaffold_21 assembled-molecule 21 Chromosome CM012133.1 <> na Primary Assembly 7710055 na Superscaffold_22 assembled-molecule 22 Chromosome CM012134.1 <> na Primary Assembly 5198135 na Superscaffold_23 assembled-molecule 23 Chromosome CM012135.1 <> na Primary Assembly 6423903 na Superscaffold_24 assembled-molecule 24 Chromosome CM012136.1 <> na Primary Assembly 6461084 na Superscaffold_25 assembled-molecule 25 Chromosome CM012137.1 <> na Primary Assembly 2161911 na Superscaffold_26 assembled-molecule 26 Chromosome CM012138.1 <> na Primary Assembly 6306732 na Superscaffold_27 assembled-molecule 27 Chromosome CM012139.1 <> na Primary Assembly 5749075 na Superscaffold_28 assembled-molecule 28 Chromosome CM012140.1 <> na Primary Assembly 5713987 na Superscaffold_33 assembled-molecule 33 Chromosome CM012141.1 <> na Primary Assembly 1888140 na Superscaffold_Z assembled-molecule Z Chromosome CM012142.1 <> na Primary Assembly 74081004 na Superscaffold_4A assembled-molecule 4A Chromosome CM012143.1 <> na Primary Assembly 44745344 na Superscaffold_4B assembled-molecule 4B Chromosome CM012144.1 <> na Primary Assembly 23291945 na Superscaffold_5A assembled-molecule 5A Chromosome CM012145.1 <> na Primary Assembly 43880846 na scaffold_176_arrow_ctg1 assembled-molecule W Chromosome CM012146.1 <> na Primary Assembly 26448777 na scaffold_100_arrow_ctg1 unplaced-scaffold na na RRCD01000034.1 <> na Primary Assembly 89391 na scaffold_101_arrow_ctg1 unplaced-scaffold na na RRCD01000035.1 <> na Primary Assembly 27420 na scaffold_102_arrow_ctg1 unplaced-scaffold na na RRCD01000036.1 <> na Primary Assembly 88291 na scaffold_103_arrow_ctg1 unplaced-scaffold na na RRCD01000037.1 <> na Primary Assembly 52293 na scaffold_105_arrow_ctg1 unplaced-scaffold na na RRCD01000038.1 <> na Primary Assembly 117061 na scaffold_108_arrow_ctg1 unplaced-scaffold na na RRCD01000039.1 <> na Primary Assembly 92013 na scaffold_109_arrow_ctg1 unplaced-scaffold na na RRCD01000040.1 <> na Primary Assembly 58627 na scaffold_110_arrow_ctg1 unplaced-scaffold na na RRCD01000041.1 <> na Primary Assembly 47716 na scaffold_113_arrow_ctg1 unplaced-scaffold na na RRCD01000042.1 <> na Primary Assembly 50750 na scaffold_114_arrow_ctg1 unplaced-scaffold na na RRCD01000043.1 <> na Primary Assembly 21565 na scaffold_116_arrow_ctg1 unplaced-scaffold na na RRCD01000044.1 <> na Primary Assembly 49460 na scaffold_117_arrow_ctg1 unplaced-scaffold na na RRCD01000045.1 <> na Primary Assembly 41171 na scaffold_118_arrow_ctg1 unplaced-scaffold na na RRCD01000046.1 <> na Primary Assembly 27591 na scaffold_119_arrow_ctg1 unplaced-scaffold na na RRCD01000047.1 <> na Primary Assembly 35133 na scaffold_11_arrow_ctg1 unplaced-scaffold na na RRCD01000048.1 <> na Primary Assembly 20442 na scaffold_121_arrow_ctg1 unplaced-scaffold na na RRCD01000049.1 <> na Primary Assembly 33689 na scaffold_122_arrow_ctg1 unplaced-scaffold na na RRCD01000050.1 <> na Primary Assembly 21202 na scaffold_123_arrow_ctg1 unplaced-scaffold na na RRCD01000051.1 <> na Primary Assembly 77962 na scaffold_129_arrow_ctg1 unplaced-scaffold na na RRCD01000052.1 <> na Primary Assembly 39186 na scaffold_12_arrow_ctg1 unplaced-scaffold na na RRCD01000053.1 <> na Primary Assembly 21624 na scaffold_131_arrow_ctg1 unplaced-scaffold na na RRCD01000054.1 <> na Primary Assembly 25182 na scaffold_132_arrow_ctg1 unplaced-scaffold na na RRCD01000055.1 <> na Primary Assembly 34049 na scaffold_133_arrow_ctg1 unplaced-scaffold na na RRCD01000056.1 <> na Primary Assembly 51633 na scaffold_134_arrow_ctg1 unplaced-scaffold na na RRCD01000057.1 <> na Primary Assembly 21742 na scaffold_135_arrow_ctg1 unplaced-scaffold na na RRCD01000058.1 <> na Primary Assembly 22491 na scaffold_138_arrow_ctg1 unplaced-scaffold na na RRCD01000059.1 <> na Primary Assembly 71357 na scaffold_139_arrow_ctg1 unplaced-scaffold na na RRCD01000060.1 <> na Primary Assembly 22556 na scaffold_142_arrow_ctg1 unplaced-scaffold na na RRCD01000061.1 <> na Primary Assembly 31870 na scaffold_143_arrow_ctg1 unplaced-scaffold na na RRCD01000062.1 <> na Primary Assembly 49694 na scaffold_145_arrow_ctg1 unplaced-scaffold na na RRCD01000063.1 <> na Primary Assembly 116243 na scaffold_146_arrow_ctg1 unplaced-scaffold na na RRCD01000064.1 <> na Primary Assembly 103453 na scaffold_147_arrow_ctg1 unplaced-scaffold na na RRCD01000065.1 <> na Primary Assembly 766393 na scaffold_148_arrow_ctg1 unplaced-scaffold na na RRCD01000066.1 <> na Primary Assembly 78695 na scaffold_150_arrow_ctg1 unplaced-scaffold na na RRCD01000067.1 <> na Primary Assembly 93154 na scaffold_151_arrow_ctg1 unplaced-scaffold na na RRCD01000068.1 <> na Primary Assembly 28870 na scaffold_153_arrow_ctg1 unplaced-scaffold na na RRCD01000069.1 <> na Primary Assembly 84999 na scaffold_156_arrow_ctg1 unplaced-scaffold na na RRCD01000070.1 <> na Primary Assembly 21911 na scaffold_158_arrow_ctg1 unplaced-scaffold na na RRCD01000071.1 <> na Primary Assembly 90337 na scaffold_159_arrow_ctg1 unplaced-scaffold na na RRCD01000072.1 <> na Primary Assembly 21208 na scaffold_161_arrow_ctg1 unplaced-scaffold na na RRCD01000073.1 <> na Primary Assembly 40230 na scaffold_162_arrow_ctg1 unplaced-scaffold na na RRCD01000074.1 <> na Primary Assembly 38283 na scaffold_163_arrow_ctg1 unplaced-scaffold na na RRCD01000075.1 <> na Primary Assembly 28592 na scaffold_167_arrow_ctg1 unplaced-scaffold na na RRCD01000076.1 <> na Primary Assembly 40388 na scaffold_168_arrow_ctg1 unplaced-scaffold na na RRCD01000077.1 <> na Primary Assembly 58669 na scaffold_173_arrow_ctg1 unplaced-scaffold na na RRCD01000078.1 <> na Primary Assembly 40534 na scaffold_177_arrow_ctg1 unplaced-scaffold na na RRCD01000079.1 <> na Primary Assembly 65243 na scaffold_178_arrow_ctg1 unplaced-scaffold na na RRCD01000080.1 <> na Primary Assembly 21095 na scaffold_179_arrow_ctg1 unplaced-scaffold na na RRCD01000081.1 <> na Primary Assembly 35229 na scaffold_180_arrow_ctg1 unplaced-scaffold na na RRCD01000082.1 <> na Primary Assembly 20398 na scaffold_181_arrow_ctg1 unplaced-scaffold na na RRCD01000083.1 <> na Primary Assembly 22300 na scaffold_182_arrow_ctg1 unplaced-scaffold na na RRCD01000084.1 <> na Primary Assembly 20570 na scaffold_183_arrow_ctg1 unplaced-scaffold na na RRCD01000085.1 <> na Primary Assembly 433116 na scaffold_188_arrow_ctg1 unplaced-scaffold na na RRCD01000086.1 <> na Primary Assembly 41118 na scaffold_189_arrow_ctg1 unplaced-scaffold na na RRCD01000087.1 <> na Primary Assembly 53824 na scaffold_18_arrow_ctg1 unplaced-scaffold na na RRCD01000088.1 <> na Primary Assembly 49594 na scaffold_190_arrow_ctg1 unplaced-scaffold na na RRCD01000089.1 <> na Primary Assembly 46001 na scaffold_192_arrow_ctg1 unplaced-scaffold na na RRCD01000090.1 <> na Primary Assembly 24118 na scaffold_193_arrow_ctg1 unplaced-scaffold na na RRCD01000091.1 <> na Primary Assembly 53560 na scaffold_194_arrow_ctg1 unplaced-scaffold na na RRCD01000092.1 <> na Primary Assembly 32702 na scaffold_199_arrow_ctg1 unplaced-scaffold na na RRCD01000093.1 <> na Primary Assembly 23307 na scaffold_19_arrow_ctg1 unplaced-scaffold na na RRCD01000094.1 <> na Primary Assembly 27865 na scaffold_203_arrow_ctg1 unplaced-scaffold na na RRCD01000095.1 <> na Primary Assembly 52906 na scaffold_205_arrow_ctg1 unplaced-scaffold na na RRCD01000096.1 <> na Primary Assembly 32166 na scaffold_206_arrow_ctg1 unplaced-scaffold na na RRCD01000097.1 <> na Primary Assembly 45797 na scaffold_208_arrow_ctg1 unplaced-scaffold na na RRCD01000098.1 <> na Primary Assembly 249319 na scaffold_211_arrow_ctg1 unplaced-scaffold na na RRCD01000099.1 <> na Primary Assembly 308288 na scaffold_212_arrow_ctg1 unplaced-scaffold na na RRCD01000100.1 <> na Primary Assembly 51160 na scaffold_213_arrow_ctg1 unplaced-scaffold na na RRCD01000101.1 <> na Primary Assembly 44165 na scaffold_215_arrow_ctg1 unplaced-scaffold na na RRCD01000102.1 <> na Primary Assembly 35631 na scaffold_216_arrow_ctg1 unplaced-scaffold na na RRCD01000103.1 <> na Primary Assembly 33371 na scaffold_217_arrow_ctg1 unplaced-scaffold na na RRCD01000104.1 <> na Primary Assembly 44418 na scaffold_219_arrow_ctg1 unplaced-scaffold na na RRCD01000105.1 <> na Primary Assembly 20621 na scaffold_21_arrow_ctg1 unplaced-scaffold na na RRCD01000106.1 <> na Primary Assembly 55185 na scaffold_220_arrow_ctg1 unplaced-scaffold na na RRCD01000107.1 <> na Primary Assembly 35027 na scaffold_221_arrow_ctg1 unplaced-scaffold na na RRCD01000108.1 <> na Primary Assembly 33193 na scaffold_224_arrow_ctg1 unplaced-scaffold na na RRCD01000109.1 <> na Primary Assembly 47771 na scaffold_227_arrow_ctg1 unplaced-scaffold na na RRCD01000110.1 <> na Primary Assembly 21147 na scaffold_22_arrow_ctg1 unplaced-scaffold na na RRCD01000111.1 <> na Primary Assembly 86944 na scaffold_230_arrow_ctg1 unplaced-scaffold na na RRCD01000112.1 <> na Primary Assembly 21451 na scaffold_232_arrow_ctg1 unplaced-scaffold na na RRCD01000113.1 <> na Primary Assembly 80082 na scaffold_234_arrow_ctg1 unplaced-scaffold na na RRCD01000114.1 <> na Primary Assembly 44937 na scaffold_235_arrow_ctg1 unplaced-scaffold na na RRCD01000115.1 <> na Primary Assembly 21900 na scaffold_23_arrow_ctg1 unplaced-scaffold na na RRCD01000116.1 <> na Primary Assembly 64517 na scaffold_25_arrow_ctg1 unplaced-scaffold na na RRCD01000117.1 <> na Primary Assembly 72196 na scaffold_26_arrow_ctg1 unplaced-scaffold na na RRCD01000118.1 <> na Primary Assembly 114866 na scaffold_27_arrow_ctg1 unplaced-scaffold na na RRCD01000119.1 <> na Primary Assembly 150140 na scaffold_29_arrow_ctg1 unplaced-scaffold na na RRCD01000120.1 <> na Primary Assembly 44491 na scaffold_31_arrow_ctg1 unplaced-scaffold na na RRCD01000121.1 <> na Primary Assembly 4777 na scaffold_32_arrow_ctg1 unplaced-scaffold na na RRCD01000122.1 <> na Primary Assembly 22773 na scaffold_33_arrow_ctg1 unplaced-scaffold na na RRCD01000123.1 <> na Primary Assembly 31849 na scaffold_38_arrow_ctg1 unplaced-scaffold na na RRCD01000124.1 <> na Primary Assembly 29917 na scaffold_39_arrow_ctg1 unplaced-scaffold na na RRCD01000125.1 <> na Primary Assembly 23626 na scaffold_3_arrow_ctg1 unplaced-scaffold na na RRCD01000126.1 <> na Primary Assembly 28703 na scaffold_41_arrow_ctg1 unplaced-scaffold na na RRCD01000127.1 <> na Primary Assembly 34025 na scaffold_44_arrow_ctg1 unplaced-scaffold na na RRCD01000128.1 <> na Primary Assembly 95945 na scaffold_45_arrow_ctg1 unplaced-scaffold na na RRCD01000129.1 <> na Primary Assembly 63497 na scaffold_46_arrow_ctg1 unplaced-scaffold na na RRCD01000130.1 <> na Primary Assembly 51536 na scaffold_47_arrow_ctg1 unplaced-scaffold na na RRCD01000131.1 <> na Primary Assembly 16959 na scaffold_48_arrow_ctg1 unplaced-scaffold na na RRCD01000132.1 <> na Primary Assembly 28674 na scaffold_4_arrow_ctg1 unplaced-scaffold na na RRCD01000133.1 <> na Primary Assembly 44112 na scaffold_56_arrow_ctg1 unplaced-scaffold na na RRCD01000134.1 <> na Primary Assembly 47374 na scaffold_59_arrow_ctg1 unplaced-scaffold na na RRCD01000135.1 <> na Primary Assembly 46574 na scaffold_61_arrow_ctg1 unplaced-scaffold na na RRCD01000136.1 <> na Primary Assembly 29997 na scaffold_63_arrow_ctg1 unplaced-scaffold na na RRCD01000137.1 <> na Primary Assembly 39109 na scaffold_65_arrow_ctg1 unplaced-scaffold na na RRCD01000138.1 <> na Primary Assembly 22524 na scaffold_67_arrow_ctg1 unplaced-scaffold na na RRCD01000139.1 <> na Primary Assembly 73637 na scaffold_68_arrow_ctg1 unplaced-scaffold na na RRCD01000140.1 <> na Primary Assembly 98386 na scaffold_71_arrow_ctg1 unplaced-scaffold na na RRCD01000141.1 <> na Primary Assembly 35194 na scaffold_72_arrow_ctg1 unplaced-scaffold na na RRCD01000142.1 <> na Primary Assembly 486644 na scaffold_75_arrow_ctg1 unplaced-scaffold na na RRCD01000143.1 <> na Primary Assembly 64650 na scaffold_76_arrow_ctg1 unplaced-scaffold na na RRCD01000144.1 <> na Primary Assembly 97557 na scaffold_79_arrow_ctg1 unplaced-scaffold na na RRCD01000145.1 <> na Primary Assembly 222555 na scaffold_81_arrow_ctg1 unplaced-scaffold na na RRCD01000146.1 <> na Primary Assembly 192870 na scaffold_82_arrow_ctg1 unplaced-scaffold na na RRCD01000147.1 <> na Primary Assembly 36996 na scaffold_83_arrow_ctg1 unplaced-scaffold na na RRCD01000148.1 <> na Primary Assembly 24473 na scaffold_84_arrow_ctg1 unplaced-scaffold na na RRCD01000149.1 <> na Primary Assembly 26327 na scaffold_86_arrow_ctg1 unplaced-scaffold na na RRCD01000150.1 <> na Primary Assembly 944055 na scaffold_87_arrow_ctg1 unplaced-scaffold na na RRCD01000151.1 <> na Primary Assembly 361110 na scaffold_89_arrow_ctg1 unplaced-scaffold na na RRCD01000152.1 <> na Primary Assembly 93331 na scaffold_8_arrow_ctg1 unplaced-scaffold na na RRCD01000153.1 <> na Primary Assembly 57289 na scaffold_90_arrow_ctg1 unplaced-scaffold na na RRCD01000154.1 <> na Primary Assembly 73378 na scaffold_91_arrow_ctg1 unplaced-scaffold na na RRCD01000155.1 <> na Primary Assembly 75794 na scaffold_92_arrow_ctg1 unplaced-scaffold na na RRCD01000156.1 <> na Primary Assembly 79498 na scaffold_98_arrow_ctg1 unplaced-scaffold na na RRCD01000157.1 <> na Primary Assembly 26696 na scaffold_99_arrow_ctg1 unplaced-scaffold na na RRCD01000158.1 <> na Primary Assembly 34028 na scaffold_9_arrow_ctg1 unplaced-scaffold na na RRCD01000159.1 <> na Primary Assembly 44275 na bCalAnn1_MT assembled-molecule MT Mitochondrion CM016612.1 <> na non-nuclear 18981 na